Wall clock time and date at job start Tue Mar 31 2020 11:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.53005 * 109.46722 * 119.99604 * 2 1 3 5 5 N 1.46901 * 109.46821 * 63.94396 * 4 2 1 6 6 C 1.46898 * 110.99697 * 209.72364 * 5 4 2 7 7 C 1.50703 * 109.46803 * 71.97139 * 6 5 4 8 8 H 1.07998 * 120.00294 * 5.06510 * 7 6 5 9 9 C 1.37881 * 120.00053 * 185.06907 * 7 6 5 10 10 N 1.31522 * 119.99870 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47059 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47226 * 119.99797 * 11 9 7 14 14 H 1.48499 * 109.47458 * 240.00007 * 11 9 7 15 15 C 1.46906 * 111.00174 * 85.77641 * 5 4 2 16 16 C 1.50700 * 109.46678 * 288.20162 * 15 5 4 17 17 C 1.41004 * 126.70810 * 97.99656 * 16 15 5 18 18 C 1.36825 * 103.88629 * 179.97438 * 17 16 15 19 19 C 1.47840 * 126.92818 * 180.02562 * 18 17 16 20 20 C 1.39564 * 120.14506 * 179.97438 * 19 18 17 21 21 C 1.37966 * 119.85569 * 180.02562 * 20 19 18 22 22 C 1.38360 * 120.14217 * 359.97013 * 21 20 19 23 23 C 1.38356 * 120.29044 * 0.02723 * 22 21 20 24 24 C 1.37960 * 120.14286 * 0.02562 * 23 22 21 25 25 O 1.34500 * 106.14385 * 0.26197 * 18 17 16 26 26 N 1.20891 * 111.45268 * 359.52858 * 25 18 17 27 27 H 1.08996 * 109.47461 * 184.49296 * 1 2 3 28 28 H 1.09001 * 109.47339 * 304.49805 * 1 2 3 29 29 H 1.09009 * 109.46995 * 64.49604 * 1 2 3 30 30 H 1.09002 * 109.46995 * 239.99461 * 2 1 3 31 31 H 1.08997 * 109.46701 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47023 * 299.99455 * 3 2 1 33 33 H 1.09000 * 109.47125 * 59.99562 * 3 2 1 34 34 H 1.08996 * 109.46955 * 303.94082 * 4 2 1 35 35 H 1.09004 * 109.46763 * 183.93897 * 4 2 1 36 36 H 1.08998 * 109.47308 * 191.96421 * 6 5 4 37 37 H 1.08995 * 109.47464 * 311.97026 * 6 5 4 38 38 H 0.96999 * 119.99737 * 179.97438 * 10 9 7 39 39 H 1.08991 * 109.47297 * 168.20434 * 15 5 4 40 40 H 1.08998 * 109.46980 * 48.19596 * 15 5 4 41 41 H 1.08009 * 128.05663 * 359.94262 * 17 16 15 42 42 H 1.07994 * 120.07294 * 0.02562 * 20 19 18 43 43 H 1.07991 * 119.92950 * 180.02562 * 21 20 19 44 44 H 1.07997 * 119.85291 * 179.74270 * 22 21 20 45 45 H 1.07994 * 119.92637 * 179.97438 * 23 22 21 46 46 H 1.08005 * 120.06949 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6295 -2.1309 1.2027 6 6 1.4451 -2.6706 2.5565 7 6 0.1957 -2.0867 3.1640 8 1 -0.4453 -1.4493 2.5730 9 6 -0.1292 -2.3661 4.4746 10 7 0.6512 -3.1426 5.1943 11 14 -1.6774 -1.6418 5.2280 12 1 -2.3772 -0.8093 4.2168 13 1 -2.5735 -2.7404 5.6699 14 1 -1.3127 -0.8004 6.3960 15 6 2.5952 -2.9356 0.4423 16 6 2.4772 -2.6085 -1.0240 17 6 3.2913 -1.7214 -1.7578 18 6 2.7798 -1.7787 -3.0256 19 6 3.2602 -1.0382 -4.2115 20 6 2.6290 -1.2051 -5.4451 21 6 3.0826 -0.5114 -6.5481 22 6 4.1603 0.3486 -6.4331 23 6 4.7904 0.5186 -5.2131 24 6 4.3474 -0.1699 -4.1027 25 8 1.7485 -2.6405 -2.9741 26 7 1.6034 -3.0905 -1.8614 27 1 -0.3634 -1.0244 0.0805 28 1 -0.3634 0.5820 0.8469 29 1 -0.3633 0.4425 -0.9276 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6200 -0.2497 2.1378 35 1 3.1276 -0.6605 1.2854 36 1 1.3515 -3.7553 2.5056 37 1 2.3053 -2.4086 3.1724 38 1 0.4228 -3.3388 6.1164 39 1 2.3870 -3.9943 0.5963 40 1 3.6052 -2.7102 0.7847 41 1 4.1244 -1.1332 -1.4020 42 1 1.7874 -1.8757 -5.5360 43 1 2.5949 -0.6394 -7.5030 44 1 4.5141 0.8861 -7.3004 45 1 5.6313 1.1911 -5.1301 46 1 4.8398 -0.0359 -3.1508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755670950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:18 Heat of formation + Delta-G solvation = 67.727767 kcal Electronic energy + Delta-G solvation = -26307.668832 eV Core-core repulsion = 22778.716149 eV Total energy + Delta-G solvation = -3528.952683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.91684 -39.93621 -39.34445 -35.65040 -35.39760 -34.39407 -33.83138 -31.85815 -30.41335 -29.67375 -28.00214 -27.91796 -25.96214 -24.73695 -24.04533 -22.85707 -22.71999 -20.98714 -20.77557 -18.95679 -18.56202 -18.38458 -17.23354 -16.92798 -16.54539 -16.30495 -15.86375 -15.79476 -15.44826 -14.99255 -14.78717 -14.36895 -14.34753 -14.24057 -14.03051 -13.85613 -13.72088 -13.47624 -13.13083 -12.96580 -12.78945 -12.67950 -12.45540 -12.30030 -12.11211 -12.08895 -11.91974 -11.83054 -11.71310 -11.48082 -11.34423 -11.13394 -10.62694 -10.53807 -9.87242 -9.25136 -9.04283 -8.20483 -6.29126 -0.29597 0.49575 0.97797 1.36271 1.37359 1.39274 1.52082 2.09152 2.39019 2.92944 3.11154 3.14221 3.27674 3.49406 3.94312 4.00787 4.08100 4.09446 4.18017 4.23489 4.31773 4.34172 4.39577 4.53433 4.54244 4.61866 4.65664 4.74731 4.82594 4.90282 4.92085 4.95512 5.05423 5.07057 5.11616 5.15615 5.20367 5.22204 5.32175 5.53058 5.54193 5.55344 5.59585 5.60852 5.68974 6.03397 6.06312 6.34232 6.57663 6.87187 7.36867 7.39880 8.90013 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.003123 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.570221 B = 8964.581703 C = 9286.297348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 C -0.137 4.137 4 C 0.072 3.928 5 N -0.536 5.536 6 C 0.211 3.789 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.003 3.997 10 N -0.933 5.933 11 Si 0.962 3.038 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.276 1.276 15 C 0.127 3.873 16 C 0.038 3.962 17 C -0.203 4.203 18 C 0.005 3.995 19 C -0.040 4.040 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.096 4.096 25 O 0.097 5.903 26 N -0.379 5.379 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.038 0.962 36 H -0.001 1.001 37 H -0.025 1.025 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.195 0.805 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.725 10.259 -23.636 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.115 4.115 3 C -0.194 4.194 4 C -0.056 4.056 5 N -0.260 5.260 6 C 0.085 3.915 7 C -0.551 4.551 8 H 0.078 0.922 9 C -0.194 4.194 10 N -0.574 5.574 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.201 1.201 15 C -0.002 4.002 16 C -0.120 4.120 17 C -0.225 4.225 18 C -0.058 4.058 19 C -0.041 4.041 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.137 4.137 24 C -0.114 4.114 25 O 0.029 5.971 26 N -0.082 5.082 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.017 0.983 37 H -0.007 1.007 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.212 0.788 42 H 0.146 0.854 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.172 0.828 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.267 9.254 -23.549 26.946 hybrid contribution 0.298 0.109 1.704 1.734 sum 9.566 9.362 -21.845 25.619 Atomic orbital electron populations 1.21581 0.96379 1.00681 0.99834 1.21386 0.95550 0.96524 0.98030 1.21744 1.01372 0.94563 1.01759 1.22108 0.96957 0.88083 0.98463 1.61865 1.45011 1.02500 1.16670 1.19398 0.95053 0.93653 0.83359 1.21430 1.07899 1.29476 0.96267 0.92246 1.25826 1.00211 0.95780 0.97621 1.70080 1.39537 1.38433 1.09384 0.85432 0.79259 0.78273 0.78277 1.19158 1.20574 1.20142 1.20387 0.95559 0.98333 0.85933 1.23299 0.93710 0.97480 0.97561 1.22664 1.04736 1.03704 0.91347 1.22877 0.90787 0.95865 0.96259 1.17764 0.98412 0.98617 0.89300 1.21469 0.99675 0.99682 0.92058 1.21403 0.97371 0.96416 0.98837 1.21727 0.94891 0.97159 0.98662 1.21427 1.00770 0.99516 0.92033 1.21360 0.94568 0.94822 1.00691 1.84886 1.41625 1.45220 1.25368 1.73838 1.22287 1.20607 0.91484 0.94543 0.94179 0.93147 0.90296 0.91450 0.91793 0.93310 0.92821 0.94338 0.98261 1.00712 0.92743 0.91203 0.91439 0.78774 0.85443 0.83376 0.82940 0.82784 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.13 71.98 0.66 -4.01 16 2 C -0.10 -3.13 2.80 -10.79 -0.03 -3.16 16 3 C -0.14 -3.46 9.19 71.98 0.66 -2.80 16 4 C 0.07 2.77 4.21 86.30 0.36 3.13 16 5 N -0.54 -23.65 3.68 -905.36 -3.33 -26.98 16 6 C 0.21 11.37 4.68 85.56 0.40 11.77 16 7 C -0.51 -29.53 8.31 25.60 0.21 -29.32 16 8 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 9 C 0.00 0.20 5.46 84.65 0.46 0.66 16 10 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 11 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 C 0.13 4.78 5.53 85.56 0.47 5.25 16 16 C 0.04 1.27 5.12 43.47 0.22 1.50 16 17 C -0.20 -5.26 8.06 22.62 0.18 -5.08 16 18 C 0.01 0.13 7.10 24.48 0.17 0.30 16 19 C -0.04 -0.79 5.87 -20.10 -0.12 -0.91 16 20 C -0.11 -1.94 9.74 22.53 0.22 -1.72 16 21 C -0.12 -1.53 10.03 22.23 0.22 -1.30 16 22 C -0.11 -1.07 10.04 22.33 0.22 -0.85 16 23 C -0.12 -1.31 10.03 22.23 0.22 -1.08 16 24 C -0.10 -1.44 9.59 22.52 0.22 -1.23 16 25 O 0.10 3.05 11.04 67.23 0.74 3.80 16 26 N -0.38 -13.86 12.05 -48.85 -0.59 -14.45 16 27 H 0.04 1.57 7.60 -2.39 -0.02 1.55 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.08 2.50 3.41 -2.39 -0.01 2.49 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 2.37 7.05 -2.39 -0.02 2.36 16 35 H 0.04 1.33 7.60 -2.39 -0.02 1.31 16 36 H 0.00 -0.04 7.73 -2.39 -0.02 -0.06 16 37 H -0.02 -1.42 8.05 -2.39 -0.02 -1.44 16 38 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 39 H 0.07 2.81 7.73 -2.39 -0.02 2.79 16 40 H 0.07 2.25 7.74 -2.39 -0.02 2.23 16 41 H 0.20 3.77 7.47 -2.91 -0.02 3.75 16 42 H 0.13 2.22 7.96 -2.91 -0.02 2.20 16 43 H 0.15 1.14 8.06 -2.92 -0.02 1.12 16 44 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 45 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 46 H 0.14 1.69 7.16 -2.91 -0.02 1.67 16 Total: -1.00 -69.62 376.34 4.86 -64.76 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.96 Total: 10.57 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.77 Total: -28.84 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -3.64 Total: -97.76 kcal Atomic # 8 Polarization: 3.05 SS G_CDS: 0.74 Total: 3.80 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.62 4.86 -64.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.492 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds