Wall clock time and date at job start Tue Mar 31 2020 11:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47031 * 2 1 4 4 C 1.52995 * 109.47538 * 120.00735 * 2 1 3 5 5 N 1.46499 * 109.47432 * 177.67799 * 4 2 1 6 6 C 1.46495 * 119.99628 * 276.73716 * 5 4 2 7 7 C 1.53000 * 109.47231 * 269.99621 * 6 5 4 8 8 C 1.47194 * 109.47716 * 180.02562 * 7 6 5 9 9 N 6.39581 * 129.95106 * 179.81448 * 2 1 3 10 10 C 1.34774 * 120.00070 * 96.73408 * 5 4 2 11 11 O 1.21279 * 120.00002 * 184.89884 * 10 5 4 12 12 C 1.50699 * 119.99743 * 4.89967 * 10 5 4 13 13 C 1.50704 * 109.46979 * 176.30266 * 12 10 5 14 14 C 1.37645 * 120.12567 * 265.71634 * 13 12 10 15 15 C 1.38615 * 120.24672 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.50220 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.24712 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12756 * 85.43805 * 13 12 10 19 19 C 1.41392 * 120.24702 * 359.97438 * 18 13 12 20 20 H 1.07998 * 120.00078 * 326.63247 * 19 18 13 21 21 C 1.39948 * 119.99844 * 146.61797 * 19 18 13 22 22 N 1.30824 * 119.99461 * 173.60716 * 21 19 18 23 23 Si 1.86796 * 119.99986 * 353.61044 * 21 19 18 24 24 H 1.48504 * 109.46893 * 90.95814 * 23 21 19 25 25 H 1.48502 * 109.47065 * 210.95382 * 23 21 19 26 26 H 1.48500 * 109.47475 * 330.95473 * 23 21 19 27 27 H 1.09008 * 109.46699 * 299.99610 * 1 2 3 28 28 H 1.09000 * 109.47454 * 59.99167 * 1 2 3 29 29 H 1.08996 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46699 * 240.00390 * 2 1 3 31 31 H 1.09005 * 109.46768 * 182.64907 * 3 2 1 32 32 H 1.09000 * 109.47559 * 302.64500 * 3 2 1 33 33 H 1.08995 * 109.46915 * 62.65378 * 3 2 1 34 34 H 1.08998 * 109.47060 * 57.67048 * 4 2 1 35 35 H 1.09001 * 109.46843 * 297.67578 * 4 2 1 36 36 H 1.09004 * 109.47358 * 29.99729 * 6 5 4 37 37 H 1.08996 * 109.47031 * 150.00191 * 6 5 4 38 38 H 1.08998 * 109.47409 * 300.00516 * 7 6 5 39 39 H 1.09007 * 109.47119 * 60.00237 * 7 6 5 40 40 H 1.08996 * 109.47421 * 296.30005 * 12 10 5 41 41 H 1.09001 * 109.47242 * 56.30471 * 12 10 5 42 42 H 1.07993 * 119.87754 * 359.97438 * 14 13 12 43 43 H 1.07993 * 119.74885 * 180.02562 * 15 14 13 44 44 H 1.07993 * 119.87693 * 180.02562 * 16 15 14 45 45 H 1.07999 * 120.12621 * 179.97438 * 17 16 15 46 46 H 0.97000 * 119.99450 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5040 -0.7700 1.2214 6 6 4.1877 -1.8203 0.4628 7 6 4.4198 -3.0331 1.3662 8 6 5.1073 -4.0883 0.6043 9 7 5.6370 -4.9030 0.0159 10 6 4.2217 0.1515 1.8937 11 8 5.4308 0.1656 1.7994 12 6 3.5219 1.1645 2.7628 13 6 4.5468 2.0144 3.4686 14 6 4.9646 1.6819 4.7373 15 6 5.9076 2.4616 5.3887 16 6 6.4402 3.5836 4.7723 17 6 6.0365 3.9355 3.5048 18 6 5.0847 3.1474 2.8311 19 6 4.6679 3.4951 1.5255 20 1 4.4052 2.7219 0.8187 21 6 4.5954 4.8411 1.1492 22 7 4.3317 5.1600 -0.0918 23 14 4.8754 6.1822 2.4191 24 1 6.3150 6.5456 2.4460 25 1 4.0697 7.3775 2.0623 26 1 4.4640 5.6896 3.7582 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1290 1.4428 -0.0475 32 1 1.6385 1.9699 -0.8653 33 1 1.7160 1.9423 0.9128 34 1 1.6431 -1.7363 1.2701 35 1 1.7112 -0.1841 2.1386 36 1 3.5723 -2.1134 -0.3879 37 1 5.1465 -1.4448 0.1054 38 1 5.0351 -2.7402 2.2169 39 1 3.4609 -3.4087 1.7237 40 1 2.8884 1.7990 2.1431 41 1 2.9079 0.6479 3.5006 42 1 4.5561 0.8104 5.2271 43 1 6.2299 2.1931 6.3838 44 1 7.1746 4.1836 5.2889 45 1 6.4523 4.8101 3.0267 46 1 4.2819 6.0929 -0.3527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777372484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:57 Heat of formation + Delta-G solvation = -0.919198 kcal Electronic energy + Delta-G solvation = -26799.347562 eV Core-core repulsion = 23267.418123 eV Total energy + Delta-G solvation = -3531.929439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.97137 -37.87944 -36.85632 -36.46087 -34.22467 -33.52420 -32.09476 -31.02420 -30.33557 -27.41214 -26.79765 -26.21796 -24.98505 -23.69770 -21.43527 -20.45342 -20.01105 -18.43437 -17.78794 -17.32049 -16.87055 -16.01656 -15.58380 -15.31371 -14.96776 -14.59932 -14.36271 -14.06164 -13.78386 -13.68756 -13.44711 -13.05401 -12.87966 -12.70959 -12.65378 -12.33534 -12.17914 -12.03372 -11.98896 -11.91192 -11.86832 -11.39030 -11.24739 -11.04550 -10.88158 -10.82417 -10.77573 -10.56190 -10.38795 -10.18526 -9.63382 -9.52146 -9.23264 -9.09463 -8.48641 -7.56877 -7.47632 -6.84183 -4.45754 2.51318 2.62043 2.68754 2.72093 3.14345 3.15971 3.23069 3.28004 3.33499 4.01644 4.03657 4.55719 4.75838 4.81823 4.89407 5.05141 5.12322 5.22559 5.31018 5.39473 5.49733 5.59046 5.66487 5.71204 5.80189 5.83168 5.95483 5.98185 6.02416 6.06272 6.09665 6.15586 6.26518 6.33410 6.44833 6.59015 6.68170 6.71434 6.83827 6.96546 7.23782 7.41145 7.44808 7.64949 7.67827 7.75485 7.92554 8.15499 8.40495 8.68910 8.73222 8.86393 10.17297 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.004829 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.713865 B = 5796.660038 C = 6985.555165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.149 4.149 4 C 0.113 3.887 5 N -0.623 5.623 6 C 0.121 3.879 7 C -0.044 4.044 8 C 0.215 3.785 9 N -0.442 5.442 10 C 0.521 3.479 11 O -0.515 6.515 12 C -0.084 4.084 13 C -0.163 4.163 14 C -0.072 4.072 15 C -0.237 4.237 16 C -0.083 4.083 17 C -0.230 4.230 18 C 0.109 3.891 19 C -0.442 4.442 20 H 0.095 0.905 21 C 0.083 3.917 22 N -0.818 5.818 23 Si 0.909 3.091 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.241 1.241 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -8.852 2.755 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.206 4.206 4 C -0.010 4.010 5 N -0.358 5.358 6 C -0.004 4.004 7 C -0.086 4.086 8 C -0.103 4.103 9 N -0.119 5.119 10 C 0.311 3.689 11 O -0.388 6.388 12 C -0.123 4.123 13 C -0.165 4.165 14 C -0.091 4.091 15 C -0.257 4.257 16 C -0.101 4.101 17 C -0.249 4.249 18 C 0.106 3.894 19 C -0.471 4.471 20 H 0.112 0.888 21 C -0.134 4.134 22 N -0.444 5.444 23 Si 0.737 3.263 24 H -0.201 1.201 25 H -0.225 1.225 26 H -0.165 1.165 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.098 -9.886 1.595 12.878 hybrid contribution 0.007 1.026 0.560 1.169 sum -8.090 -8.859 2.155 12.190 Atomic orbital electron populations 1.21778 0.94890 1.01274 1.02264 1.21584 0.95586 0.98004 0.98395 1.21995 1.02428 0.94042 1.02112 1.21724 0.79417 1.00836 0.99037 1.48010 1.06484 1.29286 1.52040 1.21147 1.00150 0.86074 0.93013 1.19742 1.00563 0.90081 0.98173 1.29048 0.93467 0.94014 0.93788 1.81220 1.09779 1.11309 1.09598 1.21162 0.87817 0.80586 0.79335 1.90706 1.14358 1.71188 1.62522 1.20601 0.98195 0.95593 0.97889 1.19129 1.02511 1.00404 0.94469 1.20443 0.96743 0.97213 0.94669 1.20344 1.05234 0.99985 1.00099 1.20583 0.98227 0.96394 0.94896 1.21000 1.03356 1.03436 0.97092 1.17528 0.88974 0.90507 0.92389 1.19492 1.38522 0.93144 0.95988 0.88764 1.26095 0.91572 1.00118 0.95661 1.69626 1.36728 1.20594 1.17405 0.86405 0.78225 0.78646 0.82983 1.20063 1.22487 1.16451 0.92372 0.92512 0.92997 0.91298 0.91505 0.92848 0.91924 0.90903 0.89521 0.90109 0.88941 0.86942 0.87381 0.86999 0.90502 0.89080 0.89007 0.89044 0.88497 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.19 37.16 0.34 -0.88 16 2 C -0.12 -1.20 3.13 -90.62 -0.28 -1.49 16 3 C -0.15 -2.15 7.62 37.16 0.28 -1.87 16 4 C 0.11 1.06 4.93 -4.04 -0.02 1.04 16 5 N -0.62 -7.72 2.19 -173.70 -0.38 -8.10 16 6 C 0.12 1.31 5.42 -4.04 -0.02 1.29 16 7 C -0.04 -0.38 6.03 -29.52 -0.18 -0.56 16 8 C 0.22 2.43 15.43 -20.76 -0.32 2.11 16 9 N -0.44 -6.28 18.54 42.15 0.78 -5.50 16 10 C 0.52 8.97 5.98 -10.99 -0.07 8.91 16 11 O -0.51 -11.22 15.59 5.56 0.09 -11.13 16 12 C -0.08 -1.45 3.54 -29.03 -0.10 -1.55 16 13 C -0.16 -3.54 4.43 -103.91 -0.46 -4.00 16 14 C -0.07 -1.47 9.66 -39.66 -0.38 -1.86 16 15 C -0.24 -4.91 10.05 -39.29 -0.39 -5.30 16 16 C -0.08 -1.82 10.02 -39.66 -0.40 -2.21 16 17 C -0.23 -5.57 6.83 -38.87 -0.27 -5.84 16 18 C 0.11 2.67 5.16 -106.82 -0.55 2.12 16 19 C -0.44 -11.32 8.53 -37.74 -0.32 -11.64 16 20 H 0.09 2.50 5.65 -52.49 -0.30 2.21 16 21 C 0.08 2.10 5.50 -17.34 -0.10 2.00 16 22 N -0.82 -21.15 13.93 55.55 0.77 -20.38 16 23 Si 0.91 20.58 24.36 -169.99 -4.14 16.44 16 24 H -0.27 -6.18 6.73 56.52 0.38 -5.80 16 25 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.24 -5.53 6.42 56.52 0.36 -5.16 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.72 8.04 -51.92 -0.42 0.30 16 31 H 0.07 1.19 5.28 -51.93 -0.27 0.92 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.92 6.31 -51.93 -0.33 0.59 16 34 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.09 0.79 6.13 -51.93 -0.32 0.47 16 36 H 0.08 0.71 7.97 -51.93 -0.41 0.29 16 37 H 0.09 1.26 7.36 -51.93 -0.38 0.88 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 1.98 3.80 -51.93 -0.20 1.78 16 41 H 0.08 1.07 7.35 -51.93 -0.38 0.69 16 42 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 44 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.10 2.36 4.22 -52.49 -0.22 2.14 16 46 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -30.97 367.88 -7.23 -38.19 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.65 Total: 4.65 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -3.24 Total: -19.72 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 1.17 Total: -33.97 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.14 Total: 16.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.97 -7.23 -38.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777372484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.273 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds