Wall clock time and date at job start Tue Mar 31 2020 11:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47031 * 2 1 4 4 C 1.52995 * 109.47538 * 120.00735 * 2 1 3 5 5 N 1.46499 * 109.47432 * 177.67799 * 4 2 1 6 6 C 1.46495 * 119.99628 * 276.73716 * 5 4 2 7 7 C 1.53000 * 109.47231 * 269.99621 * 6 5 4 8 8 C 1.47194 * 109.47716 * 180.02562 * 7 6 5 9 9 N 6.39581 * 129.95106 * 179.81448 * 2 1 3 10 10 C 1.34774 * 120.00070 * 96.73408 * 5 4 2 11 11 O 1.21279 * 120.00002 * 184.89884 * 10 5 4 12 12 C 1.50699 * 119.99743 * 4.89967 * 10 5 4 13 13 C 1.50704 * 109.46979 * 176.30266 * 12 10 5 14 14 C 1.37645 * 120.12567 * 265.71634 * 13 12 10 15 15 C 1.38615 * 120.24672 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.50220 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.24712 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12756 * 85.43805 * 13 12 10 19 19 C 1.41392 * 120.24702 * 359.97438 * 18 13 12 20 20 H 1.07998 * 120.00078 * 326.63247 * 19 18 13 21 21 C 1.39948 * 119.99844 * 146.61797 * 19 18 13 22 22 N 1.30824 * 119.99461 * 173.60716 * 21 19 18 23 23 Si 1.86796 * 119.99986 * 353.61044 * 21 19 18 24 24 H 1.48504 * 109.46893 * 90.95814 * 23 21 19 25 25 H 1.48502 * 109.47065 * 210.95382 * 23 21 19 26 26 H 1.48500 * 109.47475 * 330.95473 * 23 21 19 27 27 H 1.09008 * 109.46699 * 299.99610 * 1 2 3 28 28 H 1.09000 * 109.47454 * 59.99167 * 1 2 3 29 29 H 1.08996 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46699 * 240.00390 * 2 1 3 31 31 H 1.09005 * 109.46768 * 182.64907 * 3 2 1 32 32 H 1.09000 * 109.47559 * 302.64500 * 3 2 1 33 33 H 1.08995 * 109.46915 * 62.65378 * 3 2 1 34 34 H 1.08998 * 109.47060 * 57.67048 * 4 2 1 35 35 H 1.09001 * 109.46843 * 297.67578 * 4 2 1 36 36 H 1.09004 * 109.47358 * 29.99729 * 6 5 4 37 37 H 1.08996 * 109.47031 * 150.00191 * 6 5 4 38 38 H 1.08998 * 109.47409 * 300.00516 * 7 6 5 39 39 H 1.09007 * 109.47119 * 60.00237 * 7 6 5 40 40 H 1.08996 * 109.47421 * 296.30005 * 12 10 5 41 41 H 1.09001 * 109.47242 * 56.30471 * 12 10 5 42 42 H 1.07993 * 119.87754 * 359.97438 * 14 13 12 43 43 H 1.07993 * 119.74885 * 180.02562 * 15 14 13 44 44 H 1.07993 * 119.87693 * 180.02562 * 16 15 14 45 45 H 1.07999 * 120.12621 * 179.97438 * 17 16 15 46 46 H 0.97000 * 119.99450 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5040 -0.7700 1.2214 6 6 4.1877 -1.8203 0.4628 7 6 4.4198 -3.0331 1.3662 8 6 5.1073 -4.0883 0.6043 9 7 5.6370 -4.9030 0.0159 10 6 4.2217 0.1515 1.8937 11 8 5.4308 0.1656 1.7994 12 6 3.5219 1.1645 2.7628 13 6 4.5468 2.0144 3.4686 14 6 4.9646 1.6819 4.7373 15 6 5.9076 2.4616 5.3887 16 6 6.4402 3.5836 4.7723 17 6 6.0365 3.9355 3.5048 18 6 5.0847 3.1474 2.8311 19 6 4.6679 3.4951 1.5255 20 1 4.4052 2.7219 0.8187 21 6 4.5954 4.8411 1.1492 22 7 4.3317 5.1600 -0.0918 23 14 4.8754 6.1822 2.4191 24 1 6.3150 6.5456 2.4460 25 1 4.0697 7.3775 2.0623 26 1 4.4640 5.6896 3.7582 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1290 1.4428 -0.0475 32 1 1.6385 1.9699 -0.8653 33 1 1.7160 1.9423 0.9128 34 1 1.6431 -1.7363 1.2701 35 1 1.7112 -0.1841 2.1386 36 1 3.5723 -2.1134 -0.3879 37 1 5.1465 -1.4448 0.1054 38 1 5.0351 -2.7402 2.2169 39 1 3.4609 -3.4087 1.7237 40 1 2.8884 1.7990 2.1431 41 1 2.9079 0.6479 3.5006 42 1 4.5561 0.8104 5.2271 43 1 6.2299 2.1931 6.3838 44 1 7.1746 4.1836 5.2889 45 1 6.4523 4.8101 3.0267 46 1 4.2819 6.0929 -0.3527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777372484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:56 Heat of formation + Delta-G solvation = -18.246624 kcal Electronic energy + Delta-G solvation = -26800.098935 eV Core-core repulsion = 23267.418123 eV Total energy + Delta-G solvation = -3532.680812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.20793 -39.46446 -37.93146 -37.53918 -35.39473 -35.19403 -33.53724 -32.20514 -32.00189 -28.81260 -27.91864 -27.04257 -26.66306 -24.84477 -23.17188 -21.72197 -21.29271 -19.59113 -19.15944 -18.66341 -18.04804 -17.56213 -16.88697 -16.58767 -16.02630 -15.80653 -15.64434 -15.45387 -15.41496 -14.78612 -14.58931 -14.43326 -14.27599 -13.91999 -13.83420 -13.73308 -13.53089 -13.29012 -13.16019 -13.01819 -12.83364 -12.73156 -12.64365 -12.45271 -12.27599 -11.93060 -11.89405 -11.84716 -11.70630 -11.46309 -11.43602 -11.19011 -10.90768 -10.61129 -9.54680 -9.31145 -9.19542 -8.73054 -6.37144 0.85586 0.95625 1.30078 1.41506 1.50223 1.64610 1.80241 1.90066 2.16981 2.22105 2.74834 3.18327 3.56192 3.90444 3.99392 4.08071 4.17902 4.22164 4.30290 4.33669 4.42596 4.47883 4.54326 4.60430 4.70145 4.77532 4.80953 4.87582 4.91491 4.96374 5.00461 5.01914 5.11856 5.17768 5.23294 5.24767 5.40359 5.45543 5.54776 5.59961 5.73651 5.77839 5.92983 6.02347 6.14349 6.38168 6.51856 6.56689 6.57652 6.87957 6.99408 7.46631 8.33048 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.004829 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.713865 B = 5796.660038 C = 6985.555165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.107 3.893 5 N -0.609 5.609 6 C 0.118 3.882 7 C -0.030 4.030 8 C 0.241 3.759 9 N -0.496 5.496 10 C 0.523 3.477 11 O -0.573 6.573 12 C -0.085 4.085 13 C -0.164 4.164 14 C -0.081 4.081 15 C -0.225 4.225 16 C -0.098 4.098 17 C -0.256 4.256 18 C 0.081 3.919 19 C -0.460 4.460 20 H 0.070 0.930 21 C 0.047 3.953 22 N -0.860 5.860 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.245 1.245 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.155 0.845 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.086 0.914 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 -11.219 5.513 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 C -0.200 4.200 4 C -0.015 4.015 5 N -0.342 5.342 6 C -0.006 4.006 7 C -0.071 4.071 8 C -0.076 4.076 9 N -0.175 5.175 10 C 0.314 3.686 11 O -0.451 6.451 12 C -0.124 4.124 13 C -0.165 4.165 14 C -0.098 4.098 15 C -0.244 4.244 16 C -0.116 4.116 17 C -0.275 4.275 18 C 0.078 3.922 19 C -0.491 4.491 20 H 0.088 0.912 21 C -0.166 4.166 22 N -0.488 5.488 23 Si 0.785 3.215 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.169 1.169 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.173 0.827 40 H 0.122 0.878 41 H 0.139 0.861 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.103 0.897 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.284 -12.276 4.347 16.594 hybrid contribution 0.683 1.646 -0.178 1.791 sum -9.601 -10.630 4.169 14.918 Atomic orbital electron populations 1.21731 0.92735 1.03064 1.02119 1.21541 0.97220 0.94780 0.99291 1.21912 0.99580 0.97395 1.01109 1.22082 0.77056 1.03726 0.98626 1.47909 1.07785 1.28154 1.50343 1.21226 0.98956 0.86211 0.94228 1.19782 1.02414 0.88146 0.96751 1.29425 0.92186 0.93342 0.92641 1.81252 1.11583 1.13382 1.11236 1.21042 0.87086 0.81002 0.79519 1.90684 1.16757 1.72902 1.64787 1.20655 0.97451 0.95550 0.98775 1.19640 1.02319 0.99366 0.95198 1.20933 0.96452 0.98326 0.94137 1.20884 1.03690 0.98548 1.01264 1.20939 0.98894 0.97462 0.94301 1.21139 1.04157 1.03712 0.98506 1.17791 0.89808 0.92275 0.92315 1.19433 1.40141 0.92882 0.96597 0.91222 1.26628 0.91591 1.01510 0.96834 1.69676 1.39529 1.21042 1.18545 0.85644 0.77849 0.77018 0.81010 1.20397 1.21536 1.16856 0.92008 0.93343 0.90134 0.91115 0.95663 0.94245 0.92600 0.85891 0.88649 0.87344 0.92672 0.87362 0.82721 0.87838 0.86126 0.85048 0.85489 0.86585 0.89659 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16 2 C -0.11 -2.02 3.13 -10.79 -0.03 -2.06 16 3 C -0.14 -4.28 7.62 71.98 0.55 -3.73 16 4 C 0.11 1.57 4.93 86.38 0.43 2.00 16 5 N -0.61 -13.76 2.19 -821.84 -1.80 -15.56 16 6 C 0.12 2.33 5.42 86.38 0.47 2.80 16 7 C -0.03 -0.42 6.03 28.79 0.17 -0.25 16 8 C 0.24 4.98 15.43 89.44 1.38 6.36 16 9 N -0.50 -13.67 18.54 20.00 0.37 -13.30 16 10 C 0.52 17.69 5.98 87.66 0.52 18.21 16 11 O -0.57 -25.60 15.59 -3.03 -0.05 -25.65 16 12 C -0.09 -2.85 3.54 29.10 0.10 -2.75 16 13 C -0.16 -6.93 4.43 -19.40 -0.09 -7.01 16 14 C -0.08 -3.02 9.66 22.22 0.21 -2.80 16 15 C -0.22 -8.54 10.05 22.46 0.23 -8.31 16 16 C -0.10 -4.14 10.02 22.22 0.22 -3.92 16 17 C -0.26 -12.54 6.83 22.73 0.16 -12.38 16 18 C 0.08 4.04 5.16 -21.29 -0.11 3.93 16 19 C -0.46 -24.91 8.53 23.46 0.20 -24.71 16 20 H 0.07 4.01 5.65 -2.91 -0.02 4.00 16 21 C 0.05 2.50 5.50 85.26 0.47 2.96 16 22 N -0.86 -47.24 13.93 21.83 0.30 -46.93 16 23 Si 0.96 44.05 24.36 68.60 1.67 45.72 16 24 H -0.28 -12.67 6.73 99.48 0.67 -12.00 16 25 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.24 -11.24 6.42 99.48 0.64 -10.60 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.31 8.04 -2.38 -0.02 1.29 16 31 H 0.02 0.95 5.28 -2.38 -0.01 0.94 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.70 6.31 -2.39 -0.02 1.69 16 34 H 0.12 0.74 8.12 -2.39 -0.02 0.72 16 35 H 0.10 1.31 6.13 -2.39 -0.01 1.30 16 36 H 0.11 1.55 7.97 -2.38 -0.02 1.54 16 37 H 0.05 1.54 7.36 -2.39 -0.02 1.52 16 38 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.16 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.10 3.69 3.80 -2.39 -0.01 3.69 16 41 H 0.12 2.87 7.35 -2.39 -0.02 2.85 16 42 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 45 H 0.09 4.28 4.22 -2.91 -0.01 4.26 16 46 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16 Total: -1.00 -74.64 367.88 6.93 -67.72 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.89 Total: 20.91 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 5.54 Total: -32.90 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.13 Total: -75.80 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal Total: -74.64 6.93 -67.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777372484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.470 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds