Wall clock time and date at job start Tue Mar 31 2020 11:28:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52998 * 109.47031 * 2 1
4 4 C 1.52995 * 109.47538 * 120.00735 * 2 1 3
5 5 N 1.46499 * 109.47432 * 177.67799 * 4 2 1
6 6 C 1.46495 * 119.99628 * 276.73716 * 5 4 2
7 7 C 1.53000 * 109.47231 * 269.99621 * 6 5 4
8 8 C 1.47194 * 109.47716 * 180.02562 * 7 6 5
9 9 N 6.39581 * 129.95106 * 179.81448 * 2 1 3
10 10 C 1.34774 * 120.00070 * 96.73408 * 5 4 2
11 11 O 1.21279 * 120.00002 * 184.89884 * 10 5 4
12 12 C 1.50699 * 119.99743 * 4.89967 * 10 5 4
13 13 C 1.50704 * 109.46979 * 176.30266 * 12 10 5
14 14 C 1.37645 * 120.12567 * 265.71634 * 13 12 10
15 15 C 1.38615 * 120.24672 * 179.97438 * 14 13 12
16 16 C 1.38660 * 120.50220 * 0.02562 * 15 14 13
17 17 C 1.37596 * 120.24712 * 0.02562 * 16 15 14
18 18 C 1.40696 * 120.12756 * 85.43805 * 13 12 10
19 19 C 1.41392 * 120.24702 * 359.97438 * 18 13 12
20 20 H 1.07998 * 120.00078 * 326.63247 * 19 18 13
21 21 C 1.39948 * 119.99844 * 146.61797 * 19 18 13
22 22 N 1.30824 * 119.99461 * 173.60716 * 21 19 18
23 23 Si 1.86796 * 119.99986 * 353.61044 * 21 19 18
24 24 H 1.48504 * 109.46893 * 90.95814 * 23 21 19
25 25 H 1.48502 * 109.47065 * 210.95382 * 23 21 19
26 26 H 1.48500 * 109.47475 * 330.95473 * 23 21 19
27 27 H 1.09008 * 109.46699 * 299.99610 * 1 2 3
28 28 H 1.09000 * 109.47454 * 59.99167 * 1 2 3
29 29 H 1.08996 * 109.47142 * 179.97438 * 1 2 3
30 30 H 1.09008 * 109.46699 * 240.00390 * 2 1 3
31 31 H 1.09005 * 109.46768 * 182.64907 * 3 2 1
32 32 H 1.09000 * 109.47559 * 302.64500 * 3 2 1
33 33 H 1.08995 * 109.46915 * 62.65378 * 3 2 1
34 34 H 1.08998 * 109.47060 * 57.67048 * 4 2 1
35 35 H 1.09001 * 109.46843 * 297.67578 * 4 2 1
36 36 H 1.09004 * 109.47358 * 29.99729 * 6 5 4
37 37 H 1.08996 * 109.47031 * 150.00191 * 6 5 4
38 38 H 1.08998 * 109.47409 * 300.00516 * 7 6 5
39 39 H 1.09007 * 109.47119 * 60.00237 * 7 6 5
40 40 H 1.08996 * 109.47421 * 296.30005 * 12 10 5
41 41 H 1.09001 * 109.47242 * 56.30471 * 12 10 5
42 42 H 1.07993 * 119.87754 * 359.97438 * 14 13 12
43 43 H 1.07993 * 119.74885 * 180.02562 * 15 14 13
44 44 H 1.07993 * 119.87693 * 180.02562 * 16 15 14
45 45 H 1.07999 * 120.12621 * 179.97438 * 17 16 15
46 46 H 0.97000 * 119.99450 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7214 1.2491
5 7 3.5040 -0.7700 1.2214
6 6 4.1877 -1.8203 0.4628
7 6 4.4198 -3.0331 1.3662
8 6 5.1073 -4.0883 0.6043
9 7 5.6370 -4.9030 0.0159
10 6 4.2217 0.1515 1.8937
11 8 5.4308 0.1656 1.7994
12 6 3.5219 1.1645 2.7628
13 6 4.5468 2.0144 3.4686
14 6 4.9646 1.6819 4.7373
15 6 5.9076 2.4616 5.3887
16 6 6.4402 3.5836 4.7723
17 6 6.0365 3.9355 3.5048
18 6 5.0847 3.1474 2.8311
19 6 4.6679 3.4951 1.5255
20 1 4.4052 2.7219 0.8187
21 6 4.5954 4.8411 1.1492
22 7 4.3317 5.1600 -0.0918
23 14 4.8754 6.1822 2.4191
24 1 6.3150 6.5456 2.4460
25 1 4.0697 7.3775 2.0623
26 1 4.4640 5.6896 3.7582
27 1 -0.3633 0.5138 0.8901
28 1 -0.3634 0.5139 -0.8899
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8901
31 1 3.1290 1.4428 -0.0475
32 1 1.6385 1.9699 -0.8653
33 1 1.7160 1.9423 0.9128
34 1 1.6431 -1.7363 1.2701
35 1 1.7112 -0.1841 2.1386
36 1 3.5723 -2.1134 -0.3879
37 1 5.1465 -1.4448 0.1054
38 1 5.0351 -2.7402 2.2169
39 1 3.4609 -3.4087 1.7237
40 1 2.8884 1.7990 2.1431
41 1 2.9079 0.6479 3.5006
42 1 4.5561 0.8104 5.2271
43 1 6.2299 2.1931 6.3838
44 1 7.1746 4.1836 5.2889
45 1 6.4523 4.8101 3.0267
46 1 4.2819 6.0929 -0.3527
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000777372484.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:56
Heat of formation + Delta-G solvation = -18.246624 kcal
Electronic energy + Delta-G solvation = -26800.098935 eV
Core-core repulsion = 23267.418123 eV
Total energy + Delta-G solvation = -3532.680812 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.20793 -39.46446 -37.93146 -37.53918 -35.39473 -35.19403 -33.53724 -32.20514
-32.00189 -28.81260 -27.91864 -27.04257 -26.66306 -24.84477 -23.17188 -21.72197
-21.29271 -19.59113 -19.15944 -18.66341 -18.04804 -17.56213 -16.88697 -16.58767
-16.02630 -15.80653 -15.64434 -15.45387 -15.41496 -14.78612 -14.58931 -14.43326
-14.27599 -13.91999 -13.83420 -13.73308 -13.53089 -13.29012 -13.16019 -13.01819
-12.83364 -12.73156 -12.64365 -12.45271 -12.27599 -11.93060 -11.89405 -11.84716
-11.70630 -11.46309 -11.43602 -11.19011 -10.90768 -10.61129 -9.54680 -9.31145
-9.19542 -8.73054 -6.37144 0.85586 0.95625 1.30078 1.41506 1.50223
1.64610 1.80241 1.90066 2.16981 2.22105 2.74834 3.18327 3.56192
3.90444 3.99392 4.08071 4.17902 4.22164 4.30290 4.33669 4.42596
4.47883 4.54326 4.60430 4.70145 4.77532 4.80953 4.87582 4.91491
4.96374 5.00461 5.01914 5.11856 5.17768 5.23294 5.24767 5.40359
5.45543 5.54776 5.59961 5.73651 5.77839 5.92983 6.02347 6.14349
6.38168 6.51856 6.56689 6.57652 6.87957 6.99408 7.46631 8.33048
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.012312 B = 0.004829 C = 0.004007
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2273.713865 B = 5796.660038 C = 6985.555165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.109 4.109
3 C -0.143 4.143
4 C 0.107 3.893
5 N -0.609 5.609
6 C 0.118 3.882
7 C -0.030 4.030
8 C 0.241 3.759
9 N -0.496 5.496
10 C 0.523 3.477
11 O -0.573 6.573
12 C -0.085 4.085
13 C -0.164 4.164
14 C -0.081 4.081
15 C -0.225 4.225
16 C -0.098 4.098
17 C -0.256 4.256
18 C 0.081 3.919
19 C -0.460 4.460
20 H 0.070 0.930
21 C 0.047 3.953
22 N -0.860 5.860
23 Si 0.958 3.042
24 H -0.277 1.277
25 H -0.288 1.288
26 H -0.245 1.245
27 H 0.061 0.939
28 H 0.047 0.953
29 H 0.080 0.920
30 H 0.070 0.930
31 H 0.024 0.976
32 H 0.038 0.962
33 H 0.055 0.945
34 H 0.123 0.877
35 H 0.095 0.905
36 H 0.108 0.892
37 H 0.055 0.945
38 H 0.108 0.892
39 H 0.155 0.845
40 H 0.104 0.896
41 H 0.121 0.879
42 H 0.132 0.868
43 H 0.127 0.873
44 H 0.116 0.884
45 H 0.086 0.914
46 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.649 -11.219 5.513 17.087
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.128 4.128
3 C -0.200 4.200
4 C -0.015 4.015
5 N -0.342 5.342
6 C -0.006 4.006
7 C -0.071 4.071
8 C -0.076 4.076
9 N -0.175 5.175
10 C 0.314 3.686
11 O -0.451 6.451
12 C -0.124 4.124
13 C -0.165 4.165
14 C -0.098 4.098
15 C -0.244 4.244
16 C -0.116 4.116
17 C -0.275 4.275
18 C 0.078 3.922
19 C -0.491 4.491
20 H 0.088 0.912
21 C -0.166 4.166
22 N -0.488 5.488
23 Si 0.785 3.215
24 H -0.204 1.204
25 H -0.215 1.215
26 H -0.169 1.169
27 H 0.080 0.920
28 H 0.067 0.933
29 H 0.099 0.901
30 H 0.089 0.911
31 H 0.043 0.957
32 H 0.058 0.942
33 H 0.074 0.926
34 H 0.141 0.859
35 H 0.114 0.886
36 H 0.127 0.873
37 H 0.073 0.927
38 H 0.126 0.874
39 H 0.173 0.827
40 H 0.122 0.878
41 H 0.139 0.861
42 H 0.150 0.850
43 H 0.145 0.855
44 H 0.134 0.866
45 H 0.103 0.897
46 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -10.284 -12.276 4.347 16.594
hybrid contribution 0.683 1.646 -0.178 1.791
sum -9.601 -10.630 4.169 14.918
Atomic orbital electron populations
1.21731 0.92735 1.03064 1.02119 1.21541 0.97220 0.94780 0.99291
1.21912 0.99580 0.97395 1.01109 1.22082 0.77056 1.03726 0.98626
1.47909 1.07785 1.28154 1.50343 1.21226 0.98956 0.86211 0.94228
1.19782 1.02414 0.88146 0.96751 1.29425 0.92186 0.93342 0.92641
1.81252 1.11583 1.13382 1.11236 1.21042 0.87086 0.81002 0.79519
1.90684 1.16757 1.72902 1.64787 1.20655 0.97451 0.95550 0.98775
1.19640 1.02319 0.99366 0.95198 1.20933 0.96452 0.98326 0.94137
1.20884 1.03690 0.98548 1.01264 1.20939 0.98894 0.97462 0.94301
1.21139 1.04157 1.03712 0.98506 1.17791 0.89808 0.92275 0.92315
1.19433 1.40141 0.92882 0.96597 0.91222 1.26628 0.91591 1.01510
0.96834 1.69676 1.39529 1.21042 1.18545 0.85644 0.77849 0.77018
0.81010 1.20397 1.21536 1.16856 0.92008 0.93343 0.90134 0.91115
0.95663 0.94245 0.92600 0.85891 0.88649 0.87344 0.92672 0.87362
0.82721 0.87838 0.86126 0.85048 0.85489 0.86585 0.89659 0.90380
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16
2 C -0.11 -2.02 3.13 -10.79 -0.03 -2.06 16
3 C -0.14 -4.28 7.62 71.98 0.55 -3.73 16
4 C 0.11 1.57 4.93 86.38 0.43 2.00 16
5 N -0.61 -13.76 2.19 -821.84 -1.80 -15.56 16
6 C 0.12 2.33 5.42 86.38 0.47 2.80 16
7 C -0.03 -0.42 6.03 28.79 0.17 -0.25 16
8 C 0.24 4.98 15.43 89.44 1.38 6.36 16
9 N -0.50 -13.67 18.54 20.00 0.37 -13.30 16
10 C 0.52 17.69 5.98 87.66 0.52 18.21 16
11 O -0.57 -25.60 15.59 -3.03 -0.05 -25.65 16
12 C -0.09 -2.85 3.54 29.10 0.10 -2.75 16
13 C -0.16 -6.93 4.43 -19.40 -0.09 -7.01 16
14 C -0.08 -3.02 9.66 22.22 0.21 -2.80 16
15 C -0.22 -8.54 10.05 22.46 0.23 -8.31 16
16 C -0.10 -4.14 10.02 22.22 0.22 -3.92 16
17 C -0.26 -12.54 6.83 22.73 0.16 -12.38 16
18 C 0.08 4.04 5.16 -21.29 -0.11 3.93 16
19 C -0.46 -24.91 8.53 23.46 0.20 -24.71 16
20 H 0.07 4.01 5.65 -2.91 -0.02 4.00 16
21 C 0.05 2.50 5.50 85.26 0.47 2.96 16
22 N -0.86 -47.24 13.93 21.83 0.30 -46.93 16
23 Si 0.96 44.05 24.36 68.60 1.67 45.72 16
24 H -0.28 -12.67 6.73 99.48 0.67 -12.00 16
25 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16
26 H -0.24 -11.24 6.42 99.48 0.64 -10.60 16
27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16
28 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16
29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16
30 H 0.07 1.31 8.04 -2.38 -0.02 1.29 16
31 H 0.02 0.95 5.28 -2.38 -0.01 0.94 16
32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
33 H 0.06 1.70 6.31 -2.39 -0.02 1.69 16
34 H 0.12 0.74 8.12 -2.39 -0.02 0.72 16
35 H 0.10 1.31 6.13 -2.39 -0.01 1.30 16
36 H 0.11 1.55 7.97 -2.38 -0.02 1.54 16
37 H 0.05 1.54 7.36 -2.39 -0.02 1.52 16
38 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16
39 H 0.16 0.83 8.14 -2.38 -0.02 0.81 16
40 H 0.10 3.69 3.80 -2.39 -0.01 3.69 16
41 H 0.12 2.87 7.35 -2.39 -0.02 2.85 16
42 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16
43 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16
44 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16
45 H 0.09 4.28 4.22 -2.91 -0.01 4.26 16
46 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16
Total: -1.00 -74.64 367.88 6.93 -67.72
By element:
Atomic # 1 Polarization: 20.02 SS G_CDS: 0.89 Total: 20.91 kcal
Atomic # 6 Polarization: -38.45 SS G_CDS: 5.54 Total: -32.90 kcal
Atomic # 7 Polarization: -74.67 SS G_CDS: -1.13 Total: -75.80 kcal
Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal
Total: -74.64 6.93 -67.72 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000777372484.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.470 kcal
(2) G-P(sol) polarization free energy of solvation -74.643 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.173 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.926 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds