Wall clock time and date at job start Tue Mar 31 2020 10:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 C 1.52999 * 109.46964 * 185.00395 * 3 2 1 5 5 C 1.53004 * 109.47231 * 185.72658 * 4 3 2 6 6 C 1.53005 * 109.47041 * 305.00036 * 3 2 1 7 7 N 1.46496 * 109.47179 * 294.81157 * 6 3 2 8 8 C 1.34773 * 119.99599 * 183.39145 * 7 6 3 9 9 O 1.21582 * 120.00477 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00029 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00073 * 180.27244 * 10 8 7 12 12 C 1.52999 * 109.47051 * 176.21644 * 11 10 8 13 13 C 1.50704 * 115.55182 * 53.99184 * 12 11 10 14 14 H 1.08001 * 119.99840 * 264.51485 * 13 12 11 15 15 C 1.37871 * 119.99682 * 84.51728 * 13 12 11 16 16 N 1.31517 * 120.00413 * 1.95551 * 15 13 12 17 17 Si 1.86809 * 119.99932 * 181.95938 * 15 13 12 18 18 H 1.48495 * 109.46718 * 59.99635 * 17 15 13 19 19 H 1.48502 * 109.47116 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46961 * 300.00048 * 17 15 13 21 21 C 1.53006 * 117.49967 * 268.32301 * 12 11 10 22 22 C 1.53000 * 117.49905 * 199.66641 * 12 11 10 23 23 S 1.81398 * 109.47137 * 65.00428 * 3 2 1 24 24 C 1.81397 * 102.99992 * 59.99895 * 23 3 2 25 25 H 1.08999 * 109.47625 * 59.99689 * 1 2 3 26 26 H 1.09001 * 109.47071 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46810 * 299.99675 * 1 2 3 28 28 H 1.09007 * 109.46810 * 240.00325 * 2 1 3 29 29 H 1.08999 * 109.47625 * 120.00311 * 2 1 3 30 30 H 1.09005 * 109.47103 * 305.72741 * 4 3 2 31 31 H 1.09000 * 109.47277 * 65.72346 * 4 3 2 32 32 H 1.08998 * 109.47052 * 177.79595 * 5 4 3 33 33 H 1.09005 * 109.46672 * 297.79218 * 5 4 3 34 34 H 1.08993 * 109.46724 * 57.79317 * 5 4 3 35 35 H 1.09001 * 109.46489 * 174.81033 * 6 3 2 36 36 H 1.08998 * 109.46976 * 54.81585 * 6 3 2 37 37 H 0.96997 * 120.00573 * 3.39643 * 7 6 3 38 38 H 0.96999 * 119.99586 * 0.02562 * 10 8 7 39 39 H 1.08996 * 109.47494 * 296.21447 * 11 10 8 40 40 H 1.09000 * 109.47109 * 56.21707 * 11 10 8 41 41 H 0.96997 * 120.00472 * 185.01578 * 16 15 13 42 42 H 1.09001 * 117.49672 * 0.02562 * 21 12 11 43 43 H 1.09000 * 117.50206 * 145.01629 * 21 12 11 44 44 H 1.09011 * 117.49808 * 214.97610 * 22 12 11 45 45 H 1.09000 * 117.49971 * 359.97227 * 22 12 11 46 46 H 1.08999 * 109.47160 * 59.99762 * 24 23 3 47 47 H 1.09001 * 109.47331 * 180.02562 * 24 23 3 48 48 H 1.08997 * 109.47063 * 300.00111 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 -0.1258 5 6 4.0867 2.8754 0.0174 6 6 1.4299 2.1991 -1.1817 7 7 1.9167 1.6201 -2.4361 8 6 1.5643 2.1715 -3.6143 9 8 0.8420 3.1493 -3.6361 10 7 2.0118 1.6385 -4.7686 11 6 1.6336 2.2415 -6.0490 12 6 2.3450 1.5082 -7.1879 13 6 2.1515 0.0140 -7.2201 14 1 2.8848 -0.6354 -6.7651 15 6 1.0383 -0.5238 -7.8302 16 7 0.1649 0.2646 -8.4178 17 14 0.7705 -2.3726 -7.8224 18 1 0.6788 -2.8535 -6.4205 19 1 -0.4902 -2.6932 -8.5387 20 1 1.9098 -3.0406 -8.5014 21 6 3.6997 2.0550 -7.6428 22 6 2.4649 2.2341 -8.5294 23 16 1.5602 2.2535 1.5501 24 6 2.3651 1.2294 2.8125 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9948 0.8206 0.6580 31 1 3.8493 1.0496 -1.1012 32 1 5.1755 2.8718 -0.0331 33 1 3.6876 3.4901 -0.7896 34 1 3.7687 3.2838 0.9766 35 1 1.7194 3.2487 -1.1294 36 1 0.3435 2.1195 -1.1422 37 1 2.4926 0.8398 -2.4189 38 1 2.5872 0.8578 -4.7512 39 1 0.5549 2.1620 -6.1836 40 1 1.9242 3.2920 -6.0557 41 1 -0.6538 -0.1056 -8.7832 42 1 4.0843 2.9369 -7.1304 43 1 4.4508 1.3341 -7.9656 44 1 2.4040 1.6308 -9.4353 45 1 2.0365 3.2339 -8.6007 46 1 3.4433 1.2360 2.6525 47 1 2.1418 1.6294 3.8016 48 1 1.9937 0.2071 2.7421 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797466509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:44 Heat of formation + Delta-G solvation = -37.920503 kcal Electronic energy + Delta-G solvation = -25096.745870 eV Core-core repulsion = 21698.655886 eV Total energy + Delta-G solvation = -3398.089985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13942 -39.10876 -38.28252 -34.97600 -34.37293 -33.93408 -33.24127 -29.89380 -28.93092 -27.82032 -27.04213 -25.97576 -22.96354 -22.92749 -22.15965 -21.30207 -20.77159 -19.45217 -18.13804 -17.10619 -17.02539 -16.86525 -16.59103 -16.04444 -15.86067 -15.72404 -15.51383 -15.35051 -14.86226 -14.40361 -14.11893 -13.99949 -13.92707 -13.76942 -13.60725 -13.47250 -13.12905 -12.89547 -12.85491 -12.77278 -12.49668 -12.39511 -12.37439 -12.00785 -11.88842 -11.63400 -11.54095 -11.46741 -11.23954 -10.93039 -10.62631 -10.42112 -10.28057 -10.00999 -9.55675 -8.50501 -8.07778 -6.21784 0.61717 1.45273 1.45977 1.52614 1.65885 1.93226 2.25588 2.44313 3.20871 3.37796 3.43680 3.59890 3.64083 3.79043 4.22272 4.27171 4.38215 4.39483 4.42952 4.46155 4.52520 4.55792 4.57836 4.63904 4.69861 4.75461 4.83091 4.95234 4.96930 5.01791 5.04560 5.05574 5.12288 5.14518 5.22494 5.30029 5.42805 5.47061 5.48308 5.54888 5.64557 5.74686 5.79356 6.13802 6.38728 6.85907 7.23753 7.48370 7.69080 8.99901 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.017265 B = 0.003372 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.410107 B = 8300.613025 C = 9088.891271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.027 4.027 4 C -0.113 4.113 5 C -0.156 4.156 6 C 0.167 3.833 7 N -0.724 5.724 8 C 0.697 3.303 9 O -0.647 6.647 10 N -0.712 5.712 11 C 0.200 3.800 12 C 0.006 3.994 13 C -0.502 4.502 14 H 0.066 0.934 15 C 0.026 3.974 16 N -0.908 5.908 17 Si 0.949 3.051 18 H -0.269 1.269 19 H -0.295 1.295 20 H -0.270 1.270 21 C -0.179 4.179 22 C -0.156 4.156 23 S -0.269 6.269 24 C -0.114 4.114 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.408 0.592 38 H 0.407 0.593 39 H 0.022 0.978 40 H 0.035 0.965 41 H 0.258 0.742 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.111 0.889 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -2.139 21.990 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.137 4.137 4 C -0.152 4.152 5 C -0.214 4.214 6 C 0.042 3.958 7 N -0.383 5.383 8 C 0.397 3.603 9 O -0.529 6.529 10 N -0.365 5.365 11 C 0.074 3.926 12 C 0.006 3.994 13 C -0.540 4.540 14 H 0.084 0.916 15 C -0.175 4.175 16 N -0.545 5.545 17 Si 0.775 3.225 18 H -0.194 1.194 19 H -0.221 1.221 20 H -0.195 1.195 21 C -0.216 4.216 22 C -0.195 4.195 23 S -0.042 6.042 24 C -0.282 4.282 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.245 0.755 38 H 0.243 0.757 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.130 0.870 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.756 -0.362 21.981 22.999 hybrid contribution 0.386 -2.308 -0.811 2.477 sum 7.142 -2.670 21.170 22.501 Atomic orbital electron populations 1.21908 0.95465 1.01993 1.02178 1.21781 0.96704 0.92988 1.03614 1.22933 0.99158 0.97992 0.93623 1.21782 0.91056 0.98916 1.03437 1.21920 1.00904 0.95862 1.02685 1.20811 0.98074 0.96418 0.80543 1.44817 1.55556 1.34646 1.03265 1.16138 0.80320 0.82553 0.81297 1.90845 1.44040 1.30709 1.87353 1.44873 1.53899 1.33941 1.03812 1.20360 0.97159 0.93438 0.81602 1.19066 0.94838 0.93910 0.91634 1.20607 1.07278 0.89900 1.36194 0.91555 1.25697 0.96350 1.01386 0.94046 1.70117 1.09855 1.36717 1.37822 0.85766 0.77095 0.81297 0.78355 1.19399 1.22093 1.19487 1.23032 0.91485 1.02139 1.04920 1.22395 1.02015 0.99298 0.95764 1.86969 1.70758 1.44389 1.02035 1.23523 1.03557 1.02097 0.99023 0.94328 0.91920 0.91168 0.90625 0.89509 0.89497 0.90652 0.91790 0.94501 0.90789 0.92532 0.92446 0.75487 0.75687 0.95955 0.94665 0.93342 0.89535 0.89626 0.91718 0.91348 0.89235 0.87043 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.26 71.98 0.67 -2.35 16 2 C -0.11 -1.76 4.73 30.59 0.14 -1.61 16 3 C -0.03 -0.48 0.21 -10.79 0.00 -0.48 16 4 C -0.11 -1.67 4.57 30.60 0.14 -1.53 16 5 C -0.16 -2.66 9.35 71.98 0.67 -1.99 16 6 C 0.17 4.37 3.89 86.38 0.34 4.71 16 7 N -0.72 -20.23 4.95 -478.54 -2.37 -22.60 16 8 C 0.70 27.06 8.57 179.05 1.53 28.59 16 9 O -0.65 -31.02 16.34 -3.97 -0.06 -31.08 16 10 N -0.71 -27.97 5.41 -478.55 -2.59 -30.56 16 11 C 0.20 9.26 5.58 86.38 0.48 9.74 16 12 C 0.01 0.29 1.59 -52.92 -0.08 0.21 16 13 C -0.50 -25.01 8.06 25.60 0.21 -24.81 16 14 H 0.07 3.13 7.81 -2.91 -0.02 3.11 16 15 C 0.03 1.36 5.43 84.65 0.46 1.81 16 16 N -0.91 -51.13 12.73 21.45 0.27 -50.85 16 17 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 C -0.18 -7.15 9.92 30.62 0.30 -6.85 16 22 C -0.16 -7.20 9.27 30.62 0.28 -6.91 16 23 S -0.27 -4.75 18.28 -56.49 -1.03 -5.78 16 24 C -0.11 -1.10 9.88 113.37 1.12 0.02 16 25 H 0.04 0.93 6.23 -2.39 -0.01 0.92 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.31 7.14 -2.38 -0.02 1.29 16 28 H 0.08 1.18 7.25 -2.38 -0.02 1.16 16 29 H 0.09 1.01 6.45 -2.39 -0.02 0.99 16 30 H 0.09 0.93 6.99 -2.38 -0.02 0.92 16 31 H 0.08 1.12 6.46 -2.39 -0.02 1.10 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.80 6.81 -2.38 -0.02 0.79 16 34 H 0.07 1.24 6.60 -2.39 -0.02 1.22 16 35 H 0.06 1.69 6.89 -2.39 -0.02 1.68 16 36 H 0.06 1.73 6.05 -2.39 -0.01 1.72 16 37 H 0.41 8.93 6.21 -92.71 -0.58 8.36 16 38 H 0.41 14.28 7.95 -92.71 -0.74 13.54 16 39 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 41 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 42 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.06 3.22 8.14 -2.38 -0.02 3.20 16 45 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.09 0.69 7.15 -2.39 -0.02 0.67 16 47 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.09 0.70 6.87 -2.39 -0.02 0.69 16 Total: -1.00 -65.02 383.30 2.15 -62.86 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -0.35 Total: 36.05 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 6.26 Total: -1.45 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -4.68 Total: -104.01 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.06 Total: -31.08 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -1.03 Total: -5.78 kcal Total: -65.02 2.15 -62.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797466509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.944 kcal (2) G-P(sol) polarization free energy of solvation -65.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds