Wall clock time and date at job start Tue Mar 31 2020 11:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47198 * 2 1 4 4 C 1.53006 * 109.46858 * 173.35603 * 3 2 1 5 5 C 1.52995 * 109.47088 * 53.35380 * 3 2 1 6 6 N 1.46495 * 109.47066 * 293.35488 * 3 2 1 7 7 C 1.46505 * 120.00117 * 106.81342 * 6 3 2 8 8 C 1.50704 * 109.46730 * 254.62087 * 7 6 3 9 9 H 1.07992 * 120.00441 * 358.10785 * 8 7 6 10 10 C 1.37876 * 119.99634 * 178.11291 * 8 7 6 11 11 N 1.31518 * 119.99825 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00109 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47227 * 59.99213 * 12 10 8 14 14 H 1.48503 * 109.47130 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46904 * 299.99618 * 12 10 8 16 16 C 1.34781 * 120.00342 * 286.81191 * 6 3 2 17 17 O 1.21542 * 120.00207 * 186.90247 * 16 6 3 18 18 C 1.47858 * 119.99545 * 6.89527 * 16 6 3 19 19 C 1.39695 * 120.07482 * 2.18546 * 18 16 6 20 20 C 1.38063 * 120.16230 * 180.22936 * 19 18 16 21 21 C 1.38091 * 120.30069 * 359.49191 * 20 19 18 22 22 C 1.50704 * 119.93062 * 180.23355 * 21 20 19 23 23 C 1.39715 * 120.13829 * 0.50855 * 21 20 19 24 24 C 1.43200 * 120.07866 * 179.72197 * 23 21 20 25 25 N 7.48307 * 129.16918 * 256.78987 * 2 1 3 26 26 C 1.39299 * 120.06818 * 182.16386 * 18 16 6 27 27 H 1.09001 * 109.47164 * 201.69062 * 1 2 3 28 28 H 1.09002 * 109.46740 * 321.68823 * 1 2 3 29 29 H 1.09001 * 109.47148 * 81.68505 * 1 2 3 30 30 H 1.09003 * 109.46817 * 239.99930 * 2 1 3 31 31 H 1.08993 * 109.47270 * 120.00510 * 2 1 3 32 32 H 1.08999 * 109.46783 * 211.34927 * 4 3 2 33 33 H 1.09002 * 109.46724 * 331.35026 * 4 3 2 34 34 H 1.09001 * 109.46706 * 91.34799 * 4 3 2 35 35 H 1.08989 * 109.47440 * 299.48299 * 5 3 2 36 36 H 1.09004 * 109.47064 * 59.48460 * 5 3 2 37 37 H 1.09000 * 109.47023 * 179.47353 * 5 3 2 38 38 H 1.09003 * 109.46383 * 14.61597 * 7 6 3 39 39 H 1.08997 * 109.47262 * 134.61808 * 7 6 3 40 40 H 0.97008 * 119.99426 * 179.97438 * 11 10 8 41 41 H 1.07996 * 119.92276 * 359.95505 * 19 18 16 42 42 H 1.08000 * 119.85342 * 179.72565 * 20 19 18 43 43 H 1.09002 * 109.47083 * 270.27562 * 22 21 20 44 44 H 1.08997 * 109.47162 * 30.27597 * 22 21 20 45 45 H 1.08998 * 109.46810 * 150.27903 * 22 21 20 46 46 H 1.08000 * 120.15032 * 0.02562 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5610 1.4456 0.1669 5 6 1.3983 2.2103 1.1573 6 7 1.6866 2.0854 -1.2680 7 6 0.6197 3.0886 -1.3083 8 6 -0.6111 2.4878 -1.9370 9 1 -0.5904 1.4712 -2.3007 10 6 -1.7638 3.2362 -2.0479 11 7 -1.7892 4.4742 -1.6047 12 14 -3.2897 2.4914 -2.8265 13 1 -3.7101 1.2983 -2.0489 14 1 -4.3855 3.4938 -2.8255 15 1 -2.9868 2.0900 -4.2238 16 6 2.3429 1.7540 -2.3976 17 8 2.1388 2.3736 -3.4231 18 6 3.3115 0.6368 -2.3891 19 6 3.5138 -0.1054 -1.2231 20 6 4.4212 -1.1459 -1.2118 21 6 5.1271 -1.4672 -2.3544 22 6 6.1116 -2.6080 -2.3341 23 6 4.9346 -0.7332 -3.5275 24 6 5.6717 -1.0636 -4.7099 25 7 6.2564 -1.3258 -5.6480 26 6 4.0238 0.3219 -3.5440 27 1 -0.3633 -0.9549 0.3798 28 1 -0.3633 0.8064 0.6371 29 1 -0.3633 0.1486 -1.0169 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8657 2.3440 0.7038 33 1 3.8664 0.5642 0.7307 34 1 4.0342 1.4309 -0.8149 35 1 0.3155 2.2159 1.0336 36 1 1.6538 1.7266 2.1002 37 1 1.7688 3.2354 1.1630 38 1 0.3880 3.4133 -0.2939 39 1 0.9479 3.9446 -1.8979 40 1 -2.6001 5.0009 -1.6831 41 1 2.9624 0.1381 -0.3270 42 1 4.5769 -1.7136 -0.3064 43 1 7.0943 -2.2347 -2.0459 44 1 5.7830 -3.3588 -1.6156 45 1 6.1697 -3.0554 -3.3263 46 1 3.8712 0.8927 -4.4481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799370255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:54 Heat of formation + Delta-G solvation = 168.388987 kcal Electronic energy + Delta-G solvation = -27546.380143 eV Core-core repulsion = 24021.792458 eV Total energy + Delta-G solvation = -3524.587685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42784 -38.81178 -37.53548 -36.33568 -34.02085 -32.70880 -32.05310 -31.65631 -30.03521 -28.60935 -27.42025 -26.64528 -23.95546 -23.36992 -22.98767 -21.58519 -21.02629 -19.42092 -17.05325 -16.54504 -16.45769 -16.12989 -15.52171 -15.20110 -14.96000 -14.69048 -14.36907 -14.10576 -13.94010 -13.84331 -13.60223 -13.23988 -13.03527 -12.88202 -12.69845 -12.60265 -12.31295 -12.18433 -12.14081 -11.86767 -11.51132 -11.30584 -11.18131 -11.04955 -11.00946 -10.77107 -10.73781 -10.58792 -10.34681 -10.04785 -9.52801 -9.36374 -9.05223 -8.93931 -8.42131 -8.32085 -7.71070 -6.05122 -4.07113 0.65950 1.07162 2.63670 2.72050 3.31283 3.36412 3.39579 3.49104 3.64713 3.92452 4.04378 4.43039 4.45340 4.54435 4.69338 4.75311 4.84796 4.95070 5.06387 5.29747 5.30388 5.31368 5.41383 5.43076 5.45805 5.53099 5.65835 5.72248 5.85832 5.88982 5.93527 5.95191 6.01169 6.17473 6.22208 6.26664 6.31057 6.39653 6.41961 6.65547 6.67769 7.01438 7.04286 7.42616 7.46416 7.51075 7.92893 8.16805 8.35616 8.87645 9.03013 9.56441 11.03229 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.004543 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.747464 B = 6162.472512 C = 6945.682403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.168 4.168 3 C 0.152 3.848 4 C -0.194 4.194 5 C -0.154 4.154 6 N -0.579 5.579 7 C 0.241 3.759 8 C -0.514 4.514 9 H 0.060 0.940 10 C 0.062 3.938 11 N -0.896 5.896 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.552 3.448 17 O -0.526 6.526 18 C -0.165 4.165 19 C -0.102 4.102 20 C -0.173 4.173 21 C -0.005 4.005 22 C -0.125 4.125 23 C -0.075 4.075 24 C 0.267 3.733 25 N -0.432 5.432 26 C -0.001 4.001 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.263 0.737 41 H 0.238 0.762 42 H 0.135 0.865 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.707 -11.472 9.322 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.206 4.206 3 C 0.065 3.935 4 C -0.250 4.250 5 C -0.211 4.211 6 N -0.311 5.311 7 C 0.122 3.878 8 C -0.553 4.553 9 H 0.078 0.922 10 C -0.139 4.139 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.339 3.661 17 O -0.404 6.404 18 C -0.168 4.168 19 C -0.118 4.118 20 C -0.191 4.191 21 C -0.008 4.008 22 C -0.182 4.182 23 C -0.078 4.078 24 C -0.048 4.048 25 N -0.108 5.108 26 C -0.023 4.023 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.153 0.847 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.352 -11.343 7.342 18.307 hybrid contribution -1.089 -0.299 -0.250 1.157 sum 11.263 -11.641 7.091 17.682 Atomic orbital electron populations 1.22057 0.93594 1.00826 1.04930 1.22922 0.99075 0.95896 1.02659 1.20705 0.93187 0.92784 0.86786 1.23494 0.95525 1.02091 1.03877 1.22245 1.03519 0.99933 0.95404 1.48210 1.36439 1.41476 1.04969 1.19474 0.83216 0.86358 0.98742 1.21355 0.95387 0.99378 1.39172 0.92201 1.24867 0.98735 0.94777 0.95562 1.69913 1.28523 1.08268 1.46870 0.86656 0.82440 0.78776 0.80176 1.20241 1.21313 1.20245 1.17851 0.80845 0.83250 0.84131 1.90760 1.65176 1.52927 1.31512 1.20191 1.01868 1.00251 0.94496 1.25676 0.93850 0.89692 1.02576 1.20840 0.99862 1.00307 0.98084 1.20062 0.94739 0.94236 0.91783 1.20956 0.98028 0.95946 1.03249 1.15659 1.01897 1.01479 0.88800 1.25598 0.93065 0.93320 0.92798 1.81222 1.10242 1.08789 1.10522 1.21279 0.90118 0.92493 0.98361 0.94012 0.91134 0.90504 0.88924 0.90693 0.92039 0.90733 0.88677 0.89185 0.92009 0.91670 0.93074 0.94853 0.92766 0.74736 0.84737 0.90245 0.90391 0.91553 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.24 37.16 0.34 -2.00 16 2 C -0.17 -2.08 3.86 -26.73 -0.10 -2.18 16 3 C 0.15 2.11 0.70 -131.82 -0.09 2.02 16 4 C -0.19 -2.14 7.33 36.63 0.27 -1.87 16 5 C -0.15 -2.06 6.49 37.16 0.24 -1.82 16 6 N -0.58 -11.04 2.24 -192.99 -0.43 -11.47 16 7 C 0.24 5.70 4.73 -5.19 -0.02 5.68 16 8 C -0.51 -13.42 7.97 -34.44 -0.27 -13.69 16 9 H 0.06 1.58 6.19 -52.49 -0.32 1.26 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.90 -25.28 13.29 55.43 0.74 -24.55 16 12 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.55 11.07 6.85 -12.32 -0.08 10.99 16 17 O -0.53 -12.94 16.06 5.33 0.09 -12.86 16 18 C -0.16 -2.53 4.54 -105.02 -0.48 -3.01 16 19 C -0.10 -1.19 2.76 -39.63 -0.11 -1.30 16 20 C -0.17 -1.61 9.56 -39.70 -0.38 -1.99 16 21 C -0.01 -0.05 5.92 -104.12 -0.62 -0.67 16 22 C -0.13 -0.97 9.60 36.01 0.35 -0.62 16 23 C -0.07 -0.94 5.73 -106.99 -0.61 -1.56 16 24 C 0.27 3.65 13.77 -22.47 -0.31 3.34 16 25 N -0.43 -6.61 18.54 41.84 0.78 -5.84 16 26 C 0.00 -0.02 9.30 -38.76 -0.36 -0.38 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.10 5.31 -51.93 -0.28 0.83 16 29 H 0.08 1.42 5.77 -51.93 -0.30 1.12 16 30 H 0.09 1.19 4.38 -72.53 -0.32 0.88 16 31 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 32 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 33 H 0.07 0.58 6.58 -51.93 -0.34 0.24 16 34 H 0.10 1.20 3.70 -81.58 -0.30 0.90 16 35 H 0.09 1.43 4.75 -51.94 -0.25 1.18 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.91 7.76 -51.93 -0.40 0.50 16 38 H 0.05 1.18 5.11 -51.93 -0.27 0.92 16 39 H 0.03 0.92 7.82 -51.93 -0.41 0.52 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.24 2.55 0.29 -230.42 -0.07 2.48 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 45 H 0.07 0.57 7.07 -51.93 -0.37 0.21 16 46 H 0.14 2.21 7.65 -52.49 -0.40 1.81 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -31.48 351.74 -6.98 -38.45 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.08 Total: 2.28 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.34 Total: -7.49 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 1.08 Total: -41.86 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.48 -6.98 -38.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799370255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.843 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds