Wall clock time and date at job start Tue Mar 31 2020 11:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47198 * 2 1 4 4 C 1.53006 * 109.46858 * 173.35603 * 3 2 1 5 5 C 1.52995 * 109.47088 * 53.35380 * 3 2 1 6 6 N 1.46495 * 109.47066 * 293.35488 * 3 2 1 7 7 C 1.46505 * 120.00117 * 106.81342 * 6 3 2 8 8 C 1.50704 * 109.46730 * 254.62087 * 7 6 3 9 9 H 1.07992 * 120.00441 * 358.10785 * 8 7 6 10 10 C 1.37876 * 119.99634 * 178.11291 * 8 7 6 11 11 N 1.31518 * 119.99825 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00109 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47227 * 59.99213 * 12 10 8 14 14 H 1.48503 * 109.47130 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46904 * 299.99618 * 12 10 8 16 16 C 1.34781 * 120.00342 * 286.81191 * 6 3 2 17 17 O 1.21542 * 120.00207 * 186.90247 * 16 6 3 18 18 C 1.47858 * 119.99545 * 6.89527 * 16 6 3 19 19 C 1.39695 * 120.07482 * 2.18546 * 18 16 6 20 20 C 1.38063 * 120.16230 * 180.22936 * 19 18 16 21 21 C 1.38091 * 120.30069 * 359.49191 * 20 19 18 22 22 C 1.50704 * 119.93062 * 180.23355 * 21 20 19 23 23 C 1.39715 * 120.13829 * 0.50855 * 21 20 19 24 24 C 1.43200 * 120.07866 * 179.72197 * 23 21 20 25 25 N 7.48307 * 129.16918 * 256.78987 * 2 1 3 26 26 C 1.39299 * 120.06818 * 182.16386 * 18 16 6 27 27 H 1.09001 * 109.47164 * 201.69062 * 1 2 3 28 28 H 1.09002 * 109.46740 * 321.68823 * 1 2 3 29 29 H 1.09001 * 109.47148 * 81.68505 * 1 2 3 30 30 H 1.09003 * 109.46817 * 239.99930 * 2 1 3 31 31 H 1.08993 * 109.47270 * 120.00510 * 2 1 3 32 32 H 1.08999 * 109.46783 * 211.34927 * 4 3 2 33 33 H 1.09002 * 109.46724 * 331.35026 * 4 3 2 34 34 H 1.09001 * 109.46706 * 91.34799 * 4 3 2 35 35 H 1.08989 * 109.47440 * 299.48299 * 5 3 2 36 36 H 1.09004 * 109.47064 * 59.48460 * 5 3 2 37 37 H 1.09000 * 109.47023 * 179.47353 * 5 3 2 38 38 H 1.09003 * 109.46383 * 14.61597 * 7 6 3 39 39 H 1.08997 * 109.47262 * 134.61808 * 7 6 3 40 40 H 0.97008 * 119.99426 * 179.97438 * 11 10 8 41 41 H 1.07996 * 119.92276 * 359.95505 * 19 18 16 42 42 H 1.08000 * 119.85342 * 179.72565 * 20 19 18 43 43 H 1.09002 * 109.47083 * 270.27562 * 22 21 20 44 44 H 1.08997 * 109.47162 * 30.27597 * 22 21 20 45 45 H 1.08998 * 109.46810 * 150.27903 * 22 21 20 46 46 H 1.08000 * 120.15032 * 0.02562 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5610 1.4456 0.1669 5 6 1.3983 2.2103 1.1573 6 7 1.6866 2.0854 -1.2680 7 6 0.6197 3.0886 -1.3083 8 6 -0.6111 2.4878 -1.9370 9 1 -0.5904 1.4712 -2.3007 10 6 -1.7638 3.2362 -2.0479 11 7 -1.7892 4.4742 -1.6047 12 14 -3.2897 2.4914 -2.8265 13 1 -3.7101 1.2983 -2.0489 14 1 -4.3855 3.4938 -2.8255 15 1 -2.9868 2.0900 -4.2238 16 6 2.3429 1.7540 -2.3976 17 8 2.1388 2.3736 -3.4231 18 6 3.3115 0.6368 -2.3891 19 6 3.5138 -0.1054 -1.2231 20 6 4.4212 -1.1459 -1.2118 21 6 5.1271 -1.4672 -2.3544 22 6 6.1116 -2.6080 -2.3341 23 6 4.9346 -0.7332 -3.5275 24 6 5.6717 -1.0636 -4.7099 25 7 6.2564 -1.3258 -5.6480 26 6 4.0238 0.3219 -3.5440 27 1 -0.3633 -0.9549 0.3798 28 1 -0.3633 0.8064 0.6371 29 1 -0.3633 0.1486 -1.0169 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8657 2.3440 0.7038 33 1 3.8664 0.5642 0.7307 34 1 4.0342 1.4309 -0.8149 35 1 0.3155 2.2159 1.0336 36 1 1.6538 1.7266 2.1002 37 1 1.7688 3.2354 1.1630 38 1 0.3880 3.4133 -0.2939 39 1 0.9479 3.9446 -1.8979 40 1 -2.6001 5.0009 -1.6831 41 1 2.9624 0.1381 -0.3270 42 1 4.5769 -1.7136 -0.3064 43 1 7.0943 -2.2347 -2.0459 44 1 5.7830 -3.3588 -1.6156 45 1 6.1697 -3.0554 -3.3263 46 1 3.8712 0.8927 -4.4481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799370255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:53 Heat of formation + Delta-G solvation = 149.457398 kcal Electronic energy + Delta-G solvation = -27547.201078 eV Core-core repulsion = 24021.792458 eV Total energy + Delta-G solvation = -3525.408620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.53761 -39.87691 -39.04135 -37.48350 -35.59865 -34.08552 -33.62053 -32.67899 -31.15244 -29.87615 -28.48527 -28.09075 -25.02264 -24.93810 -24.18202 -22.72401 -22.26593 -20.59448 -18.76309 -17.97678 -17.67580 -17.42249 -16.64777 -16.48350 -16.27920 -16.11413 -15.80649 -15.21311 -15.16960 -14.94577 -14.59898 -14.33425 -14.29761 -14.06122 -13.98898 -13.69706 -13.53271 -13.35796 -13.12699 -12.97128 -12.93752 -12.81106 -12.52931 -12.43279 -12.33319 -12.08355 -12.06827 -11.96993 -11.77195 -11.53862 -11.28898 -10.66932 -10.52559 -10.32390 -9.87239 -9.43159 -9.22618 -8.15156 -6.23448 -0.30394 0.03264 1.36201 1.40271 1.46189 1.54058 1.67028 2.18122 2.29081 2.44588 2.86580 2.89636 3.15750 3.50493 3.51861 3.69144 3.79864 3.89617 3.96587 4.23865 4.34506 4.47727 4.51331 4.59242 4.68826 4.72279 4.81763 4.86074 4.86886 4.88691 4.96485 5.05691 5.16982 5.19907 5.21841 5.25050 5.27285 5.31244 5.37315 5.43538 5.44270 5.47063 5.72469 5.78604 5.86052 5.95718 6.16703 6.39016 6.75693 6.87359 7.35416 7.52184 8.91961 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.004543 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.747464 B = 6162.472512 C = 6945.682403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.165 4.165 3 C 0.137 3.863 4 C -0.194 4.194 5 C -0.153 4.153 6 N -0.581 5.581 7 C 0.257 3.743 8 C -0.513 4.513 9 H 0.051 0.949 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.949 3.051 13 H -0.259 1.259 14 H -0.281 1.281 15 H -0.288 1.288 16 C 0.540 3.460 17 O -0.597 6.597 18 C -0.187 4.187 19 C -0.085 4.085 20 C -0.151 4.151 21 C 0.013 3.987 22 C -0.126 4.126 23 C -0.085 4.085 24 C 0.282 3.718 25 N -0.466 5.466 26 C -0.014 4.014 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.028 0.972 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.056 0.944 39 H -0.022 1.022 40 H 0.263 0.737 41 H 0.251 0.749 42 H 0.192 0.808 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.052 0.948 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.472 -15.615 13.213 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.201 4.201 3 C 0.053 3.947 4 C -0.249 4.249 5 C -0.209 4.209 6 N -0.311 5.311 7 C 0.136 3.864 8 C -0.552 4.552 9 H 0.069 0.931 10 C -0.187 4.187 11 N -0.569 5.569 12 Si 0.774 3.226 13 H -0.183 1.183 14 H -0.207 1.207 15 H -0.214 1.214 16 C 0.330 3.670 17 O -0.480 6.480 18 C -0.191 4.191 19 C -0.100 4.100 20 C -0.169 4.169 21 C 0.011 3.989 22 C -0.182 4.182 23 C -0.089 4.089 24 C -0.031 4.031 25 N -0.143 5.143 26 C -0.036 4.036 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.109 0.891 31 H 0.155 0.845 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.074 0.926 39 H -0.004 1.004 40 H 0.072 0.928 41 H 0.265 0.735 42 H 0.209 0.791 43 H 0.114 0.886 44 H 0.130 0.870 45 H 0.071 0.929 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.134 -15.524 11.282 23.834 hybrid contribution -1.585 0.985 -1.423 2.347 sum 12.549 -14.539 9.860 21.589 Atomic orbital electron populations 1.21997 0.95921 1.01821 1.01744 1.22990 0.97001 0.94819 1.05329 1.21283 0.95800 0.93678 0.83963 1.23497 0.92388 1.05157 1.03843 1.22230 1.01372 0.99845 0.97487 1.48187 1.34919 1.40652 1.07293 1.18937 0.83918 0.86060 0.97507 1.21569 0.96272 0.98914 1.38418 0.93062 1.25621 1.01622 0.95202 0.96248 1.70023 1.29207 1.09379 1.48305 0.85754 0.79345 0.78739 0.78718 1.18300 1.20653 1.21382 1.18713 0.81167 0.83829 0.83244 1.90702 1.67722 1.55581 1.33982 1.19752 1.02345 1.00218 0.96747 1.25753 0.94029 0.89223 1.01039 1.21382 0.97264 0.98765 0.99456 1.20491 0.94163 0.93630 0.90663 1.21086 0.98051 0.95440 1.03660 1.15679 1.01822 1.01664 0.89689 1.25780 0.92374 0.92365 0.92612 1.81227 1.11631 1.10126 1.11278 1.21082 0.91482 0.93492 0.97539 0.91278 0.92385 0.95243 0.89103 0.84540 0.91426 0.85168 0.90278 0.92293 0.87159 0.93121 0.92578 1.00366 0.92778 0.73458 0.79059 0.88568 0.87011 0.92871 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.24 71.98 0.66 -3.76 16 2 C -0.16 -3.36 3.86 30.60 0.12 -3.25 16 3 C 0.14 3.51 0.70 3.61 0.00 3.51 16 4 C -0.19 -3.43 7.33 71.64 0.52 -2.91 16 5 C -0.15 -3.80 6.49 71.98 0.47 -3.33 16 6 N -0.58 -23.13 2.24 -882.78 -1.98 -25.10 16 7 C 0.26 13.12 4.73 85.63 0.41 13.52 16 8 C -0.51 -28.48 7.97 25.60 0.20 -28.27 16 9 H 0.05 2.88 6.19 -2.91 -0.02 2.87 16 10 C 0.01 0.64 5.46 84.65 0.46 1.11 16 11 N -0.93 -54.99 13.29 21.45 0.28 -54.70 16 12 Si 0.95 45.05 29.54 68.60 2.03 47.07 16 13 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 15 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 16 C 0.54 23.15 6.85 86.79 0.59 23.75 16 17 O -0.60 -32.58 16.06 -3.85 -0.06 -32.64 16 18 C -0.19 -5.77 4.54 -20.12 -0.09 -5.86 16 19 C -0.08 -1.62 2.76 22.24 0.06 -1.56 16 20 C -0.15 -1.79 9.56 22.19 0.21 -1.58 16 21 C 0.01 0.21 5.92 -19.54 -0.12 0.09 16 22 C -0.13 -1.24 9.60 71.24 0.68 -0.56 16 23 C -0.08 -2.04 5.73 -21.40 -0.12 -2.16 16 24 C 0.28 7.66 13.77 88.33 1.22 8.88 16 25 N -0.47 -14.36 18.54 19.00 0.35 -14.01 16 26 C -0.01 -0.43 9.30 22.80 0.21 -0.22 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.76 5.31 -2.39 -0.01 1.75 16 29 H 0.03 1.08 5.77 -2.39 -0.01 1.07 16 30 H 0.09 1.97 4.38 -21.74 -0.10 1.87 16 31 H 0.14 1.24 7.92 -2.39 -0.02 1.22 16 32 H 0.07 1.17 7.79 -2.39 -0.02 1.16 16 33 H 0.13 0.93 6.58 -2.39 -0.02 0.92 16 34 H 0.08 1.78 3.70 -30.24 -0.11 1.66 16 35 H 0.06 1.86 4.75 -2.39 -0.01 1.85 16 36 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.05 1.39 7.76 -2.39 -0.02 1.37 16 38 H 0.06 2.79 5.11 -2.39 -0.01 2.77 16 39 H -0.02 -1.33 7.82 -2.39 -0.02 -1.35 16 40 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 41 H 0.25 4.03 0.29 -170.04 -0.05 3.98 16 42 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 0.44 8.09 -2.39 -0.02 0.42 16 45 H 0.05 0.72 7.07 -2.39 -0.02 0.70 16 46 H 0.11 3.97 7.65 -2.91 -0.02 3.95 16 Total: -1.00 -80.82 351.74 6.92 -73.90 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.80 Total: 8.07 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.50 Total: -2.59 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -1.34 Total: -93.82 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.06 Total: -32.64 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -80.82 6.92 -73.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799370255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.359 kcal (2) G-P(sol) polarization free energy of solvation -80.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds