Wall clock time and date at job start Tue Mar 31 2020 10:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 C 1.52999 * 109.47001 * 119.99897 * 2 1 3 5 5 C 1.50695 * 109.47057 * 299.99993 * 4 2 1 6 6 H 1.07999 * 120.00538 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99661 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00186 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.52997 * 109.46937 * 240.00069 * 2 1 3 14 14 N 1.46498 * 109.47341 * 60.00310 * 13 2 1 15 15 C 1.34774 * 120.00067 * 180.02562 * 14 13 2 16 16 S 1.71201 * 120.00090 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99963 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99996 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47167 * 179.97438 * 18 17 15 20 20 H 1.09000 * 109.48209 * 304.97347 * 19 18 17 21 21 C 1.53089 * 109.48387 * 184.94173 * 19 18 17 22 22 C 1.53174 * 109.16975 * 182.40601 * 21 19 18 23 23 C 1.53181 * 109.03165 * 56.97731 * 22 21 19 24 24 C 1.53088 * 109.16766 * 303.02224 * 23 22 21 25 25 O 1.42900 * 109.41498 * 57.60792 * 24 23 22 26 26 H 1.09000 * 109.46945 * 300.00110 * 1 2 3 27 27 H 1.09001 * 109.46662 * 59.99827 * 1 2 3 28 28 H 1.08991 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46849 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47508 * 299.99655 * 3 2 1 31 31 H 1.09000 * 109.47315 * 60.00117 * 3 2 1 32 32 H 1.09002 * 109.46997 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46625 * 59.99980 * 4 2 1 34 34 H 0.97001 * 119.99697 * 359.97438 * 8 7 5 35 35 H 1.09002 * 109.47302 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.46899 * 300.00080 * 13 2 1 37 37 H 0.97003 * 120.00107 * 359.97438 * 14 13 2 38 38 H 0.97003 * 120.00211 * 359.97438 * 17 15 14 39 39 H 1.09001 * 109.47082 * 299.99479 * 18 17 15 40 40 H 1.09003 * 109.47488 * 59.99580 * 18 17 15 41 41 H 1.09006 * 109.51988 * 302.31682 * 21 19 18 42 42 H 1.09005 * 109.52407 * 62.49580 * 21 19 18 43 43 H 1.08996 * 109.54421 * 297.11928 * 22 21 19 44 44 H 1.08991 * 109.54833 * 176.84448 * 22 21 19 45 45 H 1.09008 * 109.52150 * 183.11606 * 23 22 21 46 46 H 1.08997 * 109.52194 * 62.93359 * 23 22 21 47 47 H 1.09000 * 109.48069 * 297.62910 * 24 23 22 48 48 H 1.08997 * 109.48296 * 177.59506 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4796 6 1 0.9171 0.8675 2.3806 7 6 1.8703 -0.4822 3.7319 8 7 2.6256 -1.5521 3.8526 9 14 1.2483 0.3987 5.2572 10 1 -0.0604 -0.1752 5.6613 11 1 1.0844 1.8448 4.9614 12 1 2.2262 0.2271 6.3614 13 6 2.0400 -0.7212 -1.2492 14 7 1.5517 -0.0306 -2.4454 15 6 1.8769 -0.4914 -3.6695 16 16 2.8610 -1.8834 -3.8266 17 7 1.4281 0.1443 -4.7699 18 6 1.7820 -0.3562 -6.1005 19 6 1.1489 0.5393 -7.1673 20 1 0.0738 0.6013 -6.9986 21 6 1.4148 -0.0522 -8.5540 22 6 0.8304 0.8805 -9.6192 23 6 1.4443 2.2742 -9.4541 24 6 1.1772 2.7759 -8.0327 25 8 1.7193 1.8474 -7.0914 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 2.9483 -2.0098 3.0606 35 1 3.1300 -0.7217 -1.2491 36 1 1.6766 -1.7489 -1.2492 37 1 0.9938 0.7579 -2.3564 38 1 0.8708 0.9333 -4.6810 39 1 2.8659 -0.3479 -6.2154 40 1 1.4122 -1.3751 -6.2158 41 1 2.4894 -0.1522 -8.7074 42 1 0.9427 -1.0318 -8.6289 43 1 -0.2510 0.9417 -9.4967 44 1 1.0650 0.4939 -10.6109 45 1 0.9932 2.9585 -10.1728 46 1 2.5194 2.2212 -9.6257 47 1 0.1025 2.8672 -7.8754 48 1 1.6486 3.7491 -7.8961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806598270.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:04 Heat of formation + Delta-G solvation = -65.644645 kcal Electronic energy + Delta-G solvation = -24201.669420 eV Core-core repulsion = 20802.377226 eV Total energy + Delta-G solvation = -3399.292194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.14588 -39.07240 -37.19667 -34.63878 -34.14943 -32.61471 -31.74178 -27.85222 -26.74188 -26.69561 -26.01636 -24.62225 -23.53203 -22.97975 -22.43218 -20.79717 -19.05602 -18.14070 -17.01392 -16.92762 -16.48415 -16.38107 -15.43608 -15.12887 -15.05701 -14.82931 -14.55786 -14.06786 -14.03996 -13.62589 -13.57397 -13.21795 -12.95379 -12.91150 -12.67847 -11.86676 -11.79634 -11.76748 -11.57833 -11.28664 -11.24939 -11.12041 -11.05593 -10.91701 -10.82025 -10.67559 -10.36014 -10.13428 -10.05316 -9.99213 -9.55738 -8.98592 -8.51255 -8.32441 -7.71170 -7.27330 -6.33822 -4.03657 1.57103 2.10260 2.67045 3.18565 3.42299 3.45466 3.60561 3.61684 4.14983 4.29830 4.32712 4.44861 4.53715 4.58803 4.64421 4.89772 5.04849 5.18975 5.21026 5.24935 5.30984 5.37421 5.42037 5.48322 5.49342 5.52518 5.53360 5.61135 5.77540 5.93097 5.96137 5.96951 6.09493 6.21315 6.44146 6.46267 6.59302 6.68983 6.78416 6.90820 6.92637 6.96600 7.32358 7.38515 7.46066 8.18887 8.45997 8.88880 9.67375 11.06201 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002331 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.104926 B =12011.652091 C =12629.317950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.128 4.128 4 C 0.024 3.976 5 C -0.593 4.593 6 H 0.053 0.947 7 C 0.014 3.986 8 N -0.912 5.912 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.285 1.285 13 C 0.131 3.869 14 N -0.670 5.670 15 C 0.561 3.439 16 S -0.657 6.657 17 N -0.689 5.689 18 C 0.138 3.862 19 C 0.076 3.924 20 H 0.064 0.936 21 C -0.147 4.147 22 C -0.122 4.122 23 C -0.158 4.158 24 C 0.060 3.940 25 O -0.377 6.377 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.012 0.988 33 H 0.011 0.989 34 H 0.270 0.730 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.395 0.605 38 H 0.397 0.603 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 9.301 -26.896 29.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 C -0.185 4.185 4 C -0.013 4.013 5 C -0.632 4.632 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.549 5.549 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.211 1.211 13 C 0.009 3.991 14 N -0.297 5.297 15 C 0.200 3.800 16 S -0.533 6.533 17 N -0.320 5.320 18 C 0.014 3.986 19 C 0.018 3.982 20 H 0.082 0.918 21 C -0.185 4.185 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.016 4.016 25 O -0.296 6.296 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.233 0.767 38 H 0.233 0.767 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.984 8.298 -25.182 27.180 hybrid contribution -1.276 1.470 -1.808 2.657 sum -7.260 9.768 -26.990 29.607 Atomic orbital electron populations 1.21785 0.95112 1.01338 1.00277 1.20841 0.95548 0.95871 0.94475 1.21786 1.00755 0.95702 1.00290 1.19199 0.95896 0.95238 0.90972 1.21962 1.35046 1.14428 0.91726 0.92917 1.25782 0.95305 0.96594 1.01361 1.70736 1.32304 1.18133 1.33678 0.83543 0.76172 0.74975 0.75558 1.21592 1.21621 1.21078 1.22094 1.00310 0.96427 0.80272 1.45389 1.49800 1.30174 1.04371 1.22162 0.85609 0.90656 0.81611 1.93443 1.46763 1.18727 1.94362 1.44783 1.52023 1.30270 1.04940 1.21695 1.02607 0.96987 0.77302 1.22417 0.97097 0.83741 0.94929 0.91840 1.22100 1.03079 0.99601 0.93719 1.21578 1.00123 0.94983 0.99242 1.22207 1.02338 0.97342 0.97701 1.22589 0.98249 0.92706 0.88081 1.88007 1.64200 1.19936 1.57425 0.91035 0.95607 0.93153 0.93135 0.95571 0.91040 0.97006 0.97031 0.91894 0.89848 0.89862 0.76709 0.76727 0.88806 0.88236 0.90210 0.90153 0.91782 0.91054 0.90822 0.90801 0.93218 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.23 0.54 -154.51 -0.08 -1.31 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.02 0.59 3.35 -27.89 -0.09 0.49 16 5 C -0.59 -15.69 7.65 -34.44 -0.26 -15.96 16 6 H 0.05 1.35 5.68 -52.49 -0.30 1.06 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 8 N -0.91 -27.55 13.65 55.43 0.76 -26.79 16 9 Si 1.07 24.80 29.90 -169.99 -5.08 19.72 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.13 2.25 4.02 -4.04 -0.02 2.23 16 14 N -0.67 -9.19 4.96 -62.03 -0.31 -9.49 16 15 C 0.56 7.97 7.98 -86.92 -0.69 7.27 16 16 S -0.66 -12.26 27.77 -107.50 -2.99 -15.25 16 17 N -0.69 -7.14 5.51 -62.03 -0.34 -7.48 16 18 C 0.14 1.29 4.80 -4.04 -0.02 1.27 16 19 C 0.08 0.54 2.68 -26.69 -0.07 0.46 16 20 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 21 C -0.15 -0.85 5.42 -26.60 -0.14 -1.00 16 22 C -0.12 -0.59 6.03 -26.55 -0.16 -0.75 16 23 C -0.16 -0.79 6.14 -26.59 -0.16 -0.95 16 24 C 0.06 0.35 6.84 37.20 0.25 0.61 16 25 O -0.38 -3.14 10.35 -35.23 -0.36 -3.51 16 26 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 27 H 0.02 0.35 6.86 -51.93 -0.36 -0.01 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 31 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 32 H 0.01 0.30 8.01 -51.93 -0.42 -0.11 16 33 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 34 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 35 H 0.08 1.57 7.99 -51.93 -0.42 1.15 16 36 H 0.08 1.55 7.99 -51.93 -0.41 1.14 16 37 H 0.40 4.51 6.18 -40.82 -0.25 4.26 16 38 H 0.40 3.22 8.49 -40.82 -0.35 2.87 16 39 H 0.09 1.06 7.99 -51.93 -0.41 0.64 16 40 H 0.10 0.96 7.99 -51.93 -0.42 0.54 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -32.68 382.53 -12.04 -44.73 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.53 Total: 3.44 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.95 Total: -11.13 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.11 Total: -43.77 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.36 Total: -3.51 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Atomic # 16 Polarization: -12.26 SS G_CDS: -2.99 Total: -15.25 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.68 -12.04 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806598270.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.918 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds