Wall clock time and date at job start Tue Mar 31 2020 10:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 C 1.52999 * 109.47001 * 119.99897 * 2 1 3 5 5 C 1.50695 * 109.47057 * 299.99993 * 4 2 1 6 6 H 1.07999 * 120.00538 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99661 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00186 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.52997 * 109.46937 * 240.00069 * 2 1 3 14 14 N 1.46498 * 109.47341 * 60.00310 * 13 2 1 15 15 C 1.34774 * 120.00067 * 180.02562 * 14 13 2 16 16 S 1.71201 * 120.00090 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99963 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99996 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47167 * 179.97438 * 18 17 15 20 20 H 1.09000 * 109.48209 * 304.97347 * 19 18 17 21 21 C 1.53089 * 109.48387 * 184.94173 * 19 18 17 22 22 C 1.53174 * 109.16975 * 182.40601 * 21 19 18 23 23 C 1.53181 * 109.03165 * 56.97731 * 22 21 19 24 24 C 1.53088 * 109.16766 * 303.02224 * 23 22 21 25 25 O 1.42900 * 109.41498 * 57.60792 * 24 23 22 26 26 H 1.09000 * 109.46945 * 300.00110 * 1 2 3 27 27 H 1.09001 * 109.46662 * 59.99827 * 1 2 3 28 28 H 1.08991 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46849 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47508 * 299.99655 * 3 2 1 31 31 H 1.09000 * 109.47315 * 60.00117 * 3 2 1 32 32 H 1.09002 * 109.46997 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46625 * 59.99980 * 4 2 1 34 34 H 0.97001 * 119.99697 * 359.97438 * 8 7 5 35 35 H 1.09002 * 109.47302 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.46899 * 300.00080 * 13 2 1 37 37 H 0.97003 * 120.00107 * 359.97438 * 14 13 2 38 38 H 0.97003 * 120.00211 * 359.97438 * 17 15 14 39 39 H 1.09001 * 109.47082 * 299.99479 * 18 17 15 40 40 H 1.09003 * 109.47488 * 59.99580 * 18 17 15 41 41 H 1.09006 * 109.51988 * 302.31682 * 21 19 18 42 42 H 1.09005 * 109.52407 * 62.49580 * 21 19 18 43 43 H 1.08996 * 109.54421 * 297.11928 * 22 21 19 44 44 H 1.08991 * 109.54833 * 176.84448 * 22 21 19 45 45 H 1.09008 * 109.52150 * 183.11606 * 23 22 21 46 46 H 1.08997 * 109.52194 * 62.93359 * 23 22 21 47 47 H 1.09000 * 109.48069 * 297.62910 * 24 23 22 48 48 H 1.08997 * 109.48296 * 177.59506 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4796 6 1 0.9171 0.8675 2.3806 7 6 1.8703 -0.4822 3.7319 8 7 2.6256 -1.5521 3.8526 9 14 1.2483 0.3987 5.2572 10 1 -0.0604 -0.1752 5.6613 11 1 1.0844 1.8448 4.9614 12 1 2.2262 0.2271 6.3614 13 6 2.0400 -0.7212 -1.2492 14 7 1.5517 -0.0306 -2.4454 15 6 1.8769 -0.4914 -3.6695 16 16 2.8610 -1.8834 -3.8266 17 7 1.4281 0.1443 -4.7699 18 6 1.7820 -0.3562 -6.1005 19 6 1.1489 0.5393 -7.1673 20 1 0.0738 0.6013 -6.9986 21 6 1.4148 -0.0522 -8.5540 22 6 0.8304 0.8805 -9.6192 23 6 1.4443 2.2742 -9.4541 24 6 1.1772 2.7759 -8.0327 25 8 1.7193 1.8474 -7.0914 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 2.9483 -2.0098 3.0606 35 1 3.1300 -0.7217 -1.2491 36 1 1.6766 -1.7489 -1.2492 37 1 0.9938 0.7579 -2.3564 38 1 0.8708 0.9333 -4.6810 39 1 2.8659 -0.3479 -6.2154 40 1 1.4122 -1.3751 -6.2158 41 1 2.4894 -0.1522 -8.7074 42 1 0.9427 -1.0318 -8.6289 43 1 -0.2510 0.9417 -9.4967 44 1 1.0650 0.4939 -10.6109 45 1 0.9932 2.9585 -10.1728 46 1 2.5194 2.2212 -9.6257 47 1 0.1025 2.8672 -7.8754 48 1 1.6486 3.7491 -7.8961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806598270.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:03 Heat of formation + Delta-G solvation = -85.715511 kcal Electronic energy + Delta-G solvation = -24202.539758 eV Core-core repulsion = 20802.377226 eV Total energy + Delta-G solvation = -3400.162532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86410 -40.21671 -38.48391 -35.97535 -34.61011 -34.39086 -32.56666 -28.97598 -28.42823 -28.11204 -27.20904 -25.37884 -24.76394 -24.49783 -23.29375 -21.27271 -20.47972 -19.42541 -18.46831 -18.11370 -17.56503 -17.01171 -16.47246 -16.31317 -15.97657 -15.79008 -15.46525 -15.41423 -15.36039 -15.21220 -14.38569 -14.32136 -14.13832 -13.70268 -13.63803 -13.27191 -13.12622 -13.09602 -12.72332 -12.47489 -12.40034 -12.29645 -12.25128 -11.99751 -11.95735 -11.91948 -11.68650 -11.63128 -11.29478 -11.26696 -10.53229 -10.48321 -10.47257 -10.11274 -9.14565 -8.76178 -8.58039 -6.27576 0.34872 0.84493 1.46649 1.55090 1.63915 1.79635 2.51383 2.61867 2.67550 3.24886 3.59935 3.75777 3.85668 3.90790 3.93178 4.00072 4.03958 4.08827 4.20289 4.44944 4.47294 4.52469 4.56891 4.62004 4.65418 4.72523 4.77180 4.80317 4.85387 4.90266 4.97691 5.02774 5.05613 5.13881 5.18883 5.21888 5.31183 5.32331 5.37738 5.42334 5.45704 5.61149 5.84928 6.08815 6.19969 6.28491 6.35043 6.66091 7.53099 8.81901 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002331 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.104926 B =12011.652091 C =12629.317950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.123 4.123 4 C 0.025 3.975 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.047 4.047 8 N -0.946 5.946 9 Si 1.116 2.884 10 H -0.276 1.276 11 H -0.264 1.264 12 H -0.291 1.291 13 C 0.152 3.848 14 N -0.655 5.655 15 C 0.584 3.416 16 S -0.745 6.745 17 N -0.660 5.660 18 C 0.138 3.862 19 C 0.085 3.915 20 H 0.083 0.917 21 C -0.147 4.147 22 C -0.120 4.120 23 C -0.157 4.157 24 C 0.055 3.945 25 O -0.399 6.399 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.057 0.943 32 H -0.017 1.017 33 H -0.016 1.016 34 H 0.253 0.747 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.414 0.586 38 H 0.416 0.584 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.517 12.223 -28.607 32.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.059 4.059 3 C -0.180 4.180 4 C -0.013 4.013 5 C -0.626 4.626 6 H 0.084 0.916 7 C -0.244 4.244 8 N -0.585 5.585 9 Si 0.939 3.061 10 H -0.202 1.202 11 H -0.189 1.189 12 H -0.218 1.218 13 C 0.028 3.972 14 N -0.285 5.285 15 C 0.219 3.781 16 S -0.623 6.623 17 N -0.290 5.290 18 C 0.014 3.986 19 C 0.027 3.973 20 H 0.100 0.900 21 C -0.185 4.185 22 C -0.157 4.157 23 C -0.195 4.195 24 C -0.021 4.021 25 O -0.319 6.319 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.255 0.745 38 H 0.255 0.745 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.667 11.281 -26.959 30.483 hybrid contribution -0.469 0.619 -1.400 1.601 sum -9.135 11.900 -28.359 32.083 Atomic orbital electron populations 1.21719 0.93314 1.01186 1.01796 1.20639 0.96833 0.96170 0.92232 1.21721 1.00022 0.94558 1.01743 1.19117 0.94073 0.94416 0.93655 1.22344 1.33759 1.14211 0.92243 0.91641 1.27327 0.95060 0.96614 1.05391 1.70881 1.34814 1.19989 1.32805 0.82936 0.75911 0.75353 0.71923 1.20171 1.18872 1.21768 1.21561 0.98935 0.95654 0.81077 1.44923 1.49938 1.30448 1.03169 1.21541 0.84688 0.89385 0.82507 1.93689 1.50700 1.22946 1.94922 1.44763 1.50221 1.29741 1.04241 1.21784 1.01729 0.97894 0.77195 1.22355 0.97529 0.83100 0.94342 0.89966 1.22110 1.02590 1.00398 0.93441 1.21588 1.00589 0.94514 0.99055 1.22202 1.01799 0.97826 0.97669 1.22758 0.99022 0.92351 0.87948 1.87966 1.65027 1.20509 1.58408 0.92369 0.91151 0.94211 0.94391 0.91231 0.92380 0.99889 0.99774 0.93716 0.91942 0.91676 0.74532 0.74486 0.90777 0.88287 0.91422 0.89266 0.90756 0.90451 0.89324 0.91948 0.91849 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 2 C -0.06 -2.10 0.54 -52.18 -0.03 -2.13 16 3 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 4 C 0.02 1.24 3.35 29.85 0.10 1.34 16 5 C -0.59 -31.27 7.65 25.60 0.20 -31.07 16 6 H 0.07 3.28 5.68 -2.91 -0.02 3.26 16 7 C -0.05 -2.69 5.46 84.65 0.46 -2.23 16 8 N -0.95 -59.16 13.65 21.45 0.29 -58.87 16 9 Si 1.12 49.52 29.90 68.60 2.05 51.57 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.15 5.17 4.02 86.38 0.35 5.52 16 14 N -0.66 -16.44 4.96 -350.18 -1.74 -18.18 16 15 C 0.58 15.69 7.98 179.05 1.43 17.12 16 16 S -0.75 -28.47 27.77 -56.49 -1.57 -30.04 16 17 N -0.66 -11.94 5.51 -350.16 -1.93 -13.87 16 18 C 0.14 2.37 4.80 86.38 0.41 2.78 16 19 C 0.08 0.98 2.68 30.62 0.08 1.06 16 20 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 21 C -0.15 -1.44 5.42 30.68 0.17 -1.27 16 22 C -0.12 -0.85 6.03 30.71 0.19 -0.67 16 23 C -0.16 -1.20 6.14 30.68 0.19 -1.01 16 24 C 0.06 0.50 6.84 72.01 0.49 0.99 16 25 O -0.40 -5.68 10.35 -148.98 -1.54 -7.23 16 26 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 27 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 31 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 32 H -0.02 -0.95 8.01 -2.39 -0.02 -0.97 16 33 H -0.02 -0.88 8.01 -2.39 -0.02 -0.90 16 34 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 35 H 0.06 2.42 7.99 -2.39 -0.02 2.40 16 36 H 0.06 2.49 7.99 -2.39 -0.02 2.47 16 37 H 0.41 7.57 6.18 -92.71 -0.57 7.00 16 38 H 0.42 4.99 8.49 -92.71 -0.79 4.20 16 39 H 0.07 1.65 7.99 -2.39 -0.02 1.63 16 40 H 0.10 1.80 7.99 -2.39 -0.02 1.78 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 46 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -75.07 382.53 0.44 -74.63 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.32 Total: 18.28 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 5.19 Total: -16.29 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -3.37 Total: -90.92 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -1.54 Total: -7.23 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal Atomic # 16 Polarization: -28.47 SS G_CDS: -1.57 Total: -30.04 kcal Total: -75.07 0.44 -74.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806598270.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.087 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds