Wall clock time and date at job start Tue Mar 31 2020 10:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81397 * 102.99885 * 2 1 4 4 H 1.08997 * 110.53824 * 307.61015 * 3 2 1 5 5 C 1.54961 * 110.53129 * 70.24100 * 3 2 1 6 6 C 1.54895 * 102.77671 * 156.56468 * 5 3 2 7 7 C 1.54268 * 104.19476 * 322.08719 * 6 5 3 8 8 H 1.08999 * 110.03048 * 264.32059 * 7 6 5 9 9 N 1.46498 * 110.03046 * 142.89443 * 7 6 5 10 10 C 1.34782 * 120.00281 * 87.82880 * 9 7 6 11 11 O 1.21592 * 119.99707 * 0.02562 * 10 9 7 12 12 N 1.34768 * 120.00041 * 179.97438 * 10 9 7 13 13 C 1.46506 * 120.00076 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47272 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46935 * 299.99830 * 14 13 12 16 16 C 1.52993 * 109.47005 * 60.00180 * 14 13 12 17 17 C 1.53003 * 109.47059 * 180.02562 * 14 13 12 18 18 C 1.50700 * 109.47200 * 179.97438 * 17 14 13 19 19 H 1.08001 * 119.99609 * 359.97438 * 18 17 14 20 20 C 1.37872 * 119.99913 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00363 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99815 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47004 * 60.00010 * 22 20 18 24 24 H 1.48504 * 109.46888 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46957 * 299.99834 * 22 20 18 26 26 C 1.53869 * 106.60115 * 23.60777 * 7 6 5 27 27 H 1.09006 * 109.46994 * 60.00365 * 1 2 3 28 28 H 1.09000 * 109.46789 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47092 * 300.00008 * 1 2 3 30 30 H 1.09001 * 110.71970 * 38.25744 * 5 3 2 31 31 H 1.08991 * 110.92569 * 274.97327 * 5 3 2 32 32 H 1.08997 * 110.48689 * 203.40743 * 6 5 3 33 33 H 1.09000 * 110.59637 * 80.82119 * 6 5 3 34 34 H 0.97003 * 120.00002 * 267.82951 * 9 7 6 35 35 H 0.97003 * 120.00242 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.46842 * 300.00783 * 13 12 10 37 37 H 1.09005 * 109.46629 * 60.00332 * 13 12 10 38 38 H 1.08997 * 109.46774 * 60.00704 * 15 14 13 39 39 H 1.09006 * 109.46752 * 179.97438 * 15 14 13 40 40 H 1.08996 * 109.47371 * 300.00216 * 15 14 13 41 41 H 1.08998 * 109.47105 * 60.00272 * 16 14 13 42 42 H 1.09007 * 109.46744 * 179.97438 * 16 14 13 43 43 H 1.08997 * 109.47644 * 299.99871 * 16 14 13 44 44 H 1.08997 * 109.46937 * 299.99955 * 17 14 13 45 45 H 1.09005 * 109.46808 * 60.00025 * 17 14 13 46 46 H 0.97001 * 119.99758 * 179.97438 * 21 20 18 47 47 H 1.09002 * 110.03268 * 119.28653 * 26 7 6 48 48 H 1.08995 * 110.03391 * 240.66959 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7011 2.2802 -0.8086 5 6 1.8663 2.4074 1.3657 6 6 2.7906 3.6494 1.4133 7 6 4.1078 3.1654 0.7725 8 1 4.8071 2.8520 1.5476 9 7 4.6978 4.2377 -0.0326 10 6 5.5271 5.1325 0.5404 11 8 5.7859 5.0493 1.7256 12 7 6.0703 6.1186 -0.2003 13 6 6.9721 7.0908 0.4224 14 6 7.4442 8.0958 -0.6302 15 6 8.1843 7.3556 -1.7461 16 6 6.2345 8.8256 -1.2172 17 6 8.3865 9.1107 0.0201 18 6 8.8521 10.1002 -1.0168 19 1 8.5103 10.0135 -2.0376 20 6 9.7150 11.1154 -0.6624 21 7 10.1316 11.2206 0.5806 22 14 10.2926 12.3415 -1.9480 23 1 9.1191 13.0508 -2.5180 24 1 11.2081 13.3259 -1.3170 25 1 11.0103 11.6222 -3.0309 26 6 3.7463 1.9697 -0.1260 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.0955 1.7239 2.1833 31 1 0.8181 2.7047 1.3951 32 1 2.9596 3.9600 2.4443 33 1 2.3630 4.4680 0.8344 34 1 4.4917 4.3039 -0.9782 35 1 5.8641 6.1847 -1.1459 36 1 6.4447 7.6183 1.2173 37 1 7.8338 6.5708 0.8410 38 1 7.5133 6.6324 -2.2095 39 1 8.5202 8.0716 -2.4963 40 1 9.0461 6.8357 -1.3279 41 1 5.7073 9.3529 -0.4222 42 1 6.5709 9.5419 -1.9668 43 1 5.5634 8.1024 -1.6806 44 1 7.8597 9.6380 0.8154 45 1 9.2484 8.5904 0.4381 46 1 10.7390 11.9347 0.8297 47 1 4.0098 2.1872 -1.1610 48 1 4.2706 1.0762 0.2127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806874686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:48 Heat of formation + Delta-G solvation = -59.552075 kcal Electronic energy + Delta-G solvation = -24091.930946 eV Core-core repulsion = 20692.902946 eV Total energy + Delta-G solvation = -3399.028000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.14329 -38.35746 -36.97826 -33.78367 -33.37849 -31.99122 -29.55408 -29.16673 -27.95891 -27.01466 -26.50593 -25.74104 -22.91668 -21.37814 -20.94917 -20.53581 -18.84732 -17.64672 -16.97192 -16.60985 -16.25876 -15.47707 -15.18319 -15.05410 -14.57648 -14.28972 -14.10017 -13.99863 -13.80512 -13.66928 -13.49894 -13.03834 -12.74344 -12.43375 -12.30154 -12.08750 -12.03712 -11.74535 -11.59260 -11.39347 -11.14902 -11.02431 -10.99329 -10.87004 -10.62405 -10.38666 -10.26015 -10.25754 -10.01431 -9.86450 -9.19394 -9.16444 -8.92936 -8.54875 -8.35092 -8.08998 -5.99176 -4.00591 1.26519 2.13736 2.84606 3.32137 3.37657 3.38753 3.39840 4.05080 4.10367 4.37934 4.46648 4.66317 4.69401 4.72555 4.94050 5.00120 5.04117 5.07943 5.21435 5.27034 5.35675 5.36093 5.51091 5.61543 5.65471 5.73659 5.75997 5.89202 5.93999 6.18441 6.22909 6.29618 6.42428 6.52482 6.60996 6.63428 6.81299 7.04980 7.07807 7.08321 7.16373 7.64958 7.77659 7.99358 8.19538 8.41190 8.80462 9.03968 9.62328 11.12154 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.042414 B = 0.002011 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.006749 B =13918.559771 C =14112.477463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.259 6.259 3 C -0.058 4.058 4 H 0.092 0.908 5 C -0.117 4.117 6 C -0.133 4.133 7 C 0.166 3.834 8 H 0.096 0.904 9 N -0.747 5.747 10 C 0.700 3.300 11 O -0.593 6.593 12 N -0.737 5.737 13 C 0.147 3.853 14 C -0.073 4.073 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.107 4.107 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.393 0.607 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.260 0.740 47 H 0.081 0.919 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.249 -20.302 -3.489 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.031 6.031 3 C -0.187 4.187 4 H 0.110 0.890 5 C -0.157 4.157 6 C -0.173 4.173 7 C 0.059 3.941 8 H 0.114 0.886 9 N -0.403 5.403 10 C 0.399 3.601 11 O -0.471 6.471 12 N -0.392 5.392 13 C 0.024 3.976 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.204 1.204 26 C -0.147 4.147 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.227 0.773 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.200 -21.162 -2.280 28.005 hybrid contribution -0.717 1.848 -1.595 2.544 sum -18.918 -19.315 -3.875 27.312 Atomic orbital electron populations 1.23369 0.94352 1.06398 1.04955 1.86927 1.07314 1.10965 1.97871 1.24046 0.99977 0.93318 1.01335 0.88961 1.22868 0.99780 0.97374 0.95635 1.22835 0.94831 0.97305 1.02343 1.21343 0.94679 0.85151 0.92953 0.88566 1.45314 1.51225 1.31269 1.12496 1.16041 0.78917 0.79743 0.85363 1.90915 1.65883 1.76155 1.14163 1.45381 1.50935 1.30401 1.12488 1.21483 0.91750 0.88639 0.95765 1.20914 0.96622 0.95117 0.94655 1.21751 0.98893 0.98933 0.98747 1.21748 0.96271 0.99309 1.00983 1.19085 0.93122 0.92180 0.95725 1.21142 1.27124 1.11301 0.95431 0.92337 1.25018 0.96499 0.97860 0.95155 1.69956 1.33720 1.32819 1.16836 0.86705 0.78611 0.81182 0.81753 1.20357 1.21409 1.20353 1.22249 0.92608 0.98727 1.01078 0.90575 0.88218 0.90399 0.89822 0.91221 0.90387 0.90953 0.77323 0.77218 0.92056 0.92032 0.95330 0.91516 0.93359 0.93392 0.91513 0.95334 0.96324 0.96310 0.92987 0.90026 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.72 101.05 1.08 0.47 16 2 S -0.26 -1.97 21.63 -107.50 -2.33 -4.29 16 3 C -0.06 -0.39 3.37 -25.03 -0.08 -0.47 16 4 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.12 -0.80 6.30 -24.70 -0.16 -0.95 16 6 C -0.13 -1.16 6.53 -25.07 -0.16 -1.33 16 7 C 0.17 1.57 3.25 -66.82 -0.22 1.36 16 8 H 0.10 1.13 7.56 -51.93 -0.39 0.74 16 9 N -0.75 -7.77 5.04 -57.58 -0.29 -8.06 16 10 C 0.70 10.46 8.56 -86.92 -0.74 9.72 16 11 O -0.59 -11.46 16.00 5.28 0.08 -11.37 16 12 N -0.74 -10.60 4.96 -65.22 -0.32 -10.92 16 13 C 0.15 2.62 4.56 -4.04 -0.02 2.60 16 14 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 15 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 16 C -0.13 -2.18 8.05 37.15 0.30 -1.88 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 18 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 19 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 C -0.11 -0.78 6.15 -25.61 -0.16 -0.94 16 27 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.60 8.05 -51.93 -0.42 0.19 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.39 3.00 8.33 -40.82 -0.34 2.66 16 35 H 0.39 4.69 6.18 -40.82 -0.25 4.43 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 39 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 43 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.08 0.52 7.62 -51.93 -0.40 0.13 16 48 H 0.09 0.67 7.79 -51.93 -0.40 0.27 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -31.52 387.25 -10.25 -41.77 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.53 Total: 2.89 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.42 Total: -6.34 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.12 Total: -44.63 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.33 Total: -4.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.52 -10.25 -41.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806874686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.780 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds