Wall clock time and date at job start Tue Mar 31 2020 10:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81397 * 102.99885 * 2 1 4 4 H 1.08997 * 110.53824 * 307.61015 * 3 2 1 5 5 C 1.54961 * 110.53129 * 70.24100 * 3 2 1 6 6 C 1.54895 * 102.77671 * 156.56468 * 5 3 2 7 7 C 1.54268 * 104.19476 * 322.08719 * 6 5 3 8 8 H 1.08999 * 110.03048 * 264.32059 * 7 6 5 9 9 N 1.46498 * 110.03046 * 142.89443 * 7 6 5 10 10 C 1.34782 * 120.00281 * 87.82880 * 9 7 6 11 11 O 1.21592 * 119.99707 * 0.02562 * 10 9 7 12 12 N 1.34768 * 120.00041 * 179.97438 * 10 9 7 13 13 C 1.46506 * 120.00076 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47272 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46935 * 299.99830 * 14 13 12 16 16 C 1.52993 * 109.47005 * 60.00180 * 14 13 12 17 17 C 1.53003 * 109.47059 * 180.02562 * 14 13 12 18 18 C 1.50700 * 109.47200 * 179.97438 * 17 14 13 19 19 H 1.08001 * 119.99609 * 359.97438 * 18 17 14 20 20 C 1.37872 * 119.99913 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00363 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99815 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47004 * 60.00010 * 22 20 18 24 24 H 1.48504 * 109.46888 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46957 * 299.99834 * 22 20 18 26 26 C 1.53869 * 106.60115 * 23.60777 * 7 6 5 27 27 H 1.09006 * 109.46994 * 60.00365 * 1 2 3 28 28 H 1.09000 * 109.46789 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47092 * 300.00008 * 1 2 3 30 30 H 1.09001 * 110.71970 * 38.25744 * 5 3 2 31 31 H 1.08991 * 110.92569 * 274.97327 * 5 3 2 32 32 H 1.08997 * 110.48689 * 203.40743 * 6 5 3 33 33 H 1.09000 * 110.59637 * 80.82119 * 6 5 3 34 34 H 0.97003 * 120.00002 * 267.82951 * 9 7 6 35 35 H 0.97003 * 120.00242 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.46842 * 300.00783 * 13 12 10 37 37 H 1.09005 * 109.46629 * 60.00332 * 13 12 10 38 38 H 1.08997 * 109.46774 * 60.00704 * 15 14 13 39 39 H 1.09006 * 109.46752 * 179.97438 * 15 14 13 40 40 H 1.08996 * 109.47371 * 300.00216 * 15 14 13 41 41 H 1.08998 * 109.47105 * 60.00272 * 16 14 13 42 42 H 1.09007 * 109.46744 * 179.97438 * 16 14 13 43 43 H 1.08997 * 109.47644 * 299.99871 * 16 14 13 44 44 H 1.08997 * 109.46937 * 299.99955 * 17 14 13 45 45 H 1.09005 * 109.46808 * 60.00025 * 17 14 13 46 46 H 0.97001 * 119.99758 * 179.97438 * 21 20 18 47 47 H 1.09002 * 110.03268 * 119.28653 * 26 7 6 48 48 H 1.08995 * 110.03391 * 240.66959 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7011 2.2802 -0.8086 5 6 1.8663 2.4074 1.3657 6 6 2.7906 3.6494 1.4133 7 6 4.1078 3.1654 0.7725 8 1 4.8071 2.8520 1.5476 9 7 4.6978 4.2377 -0.0326 10 6 5.5271 5.1325 0.5404 11 8 5.7859 5.0493 1.7256 12 7 6.0703 6.1186 -0.2003 13 6 6.9721 7.0908 0.4224 14 6 7.4442 8.0958 -0.6302 15 6 8.1843 7.3556 -1.7461 16 6 6.2345 8.8256 -1.2172 17 6 8.3865 9.1107 0.0201 18 6 8.8521 10.1002 -1.0168 19 1 8.5103 10.0135 -2.0376 20 6 9.7150 11.1154 -0.6624 21 7 10.1316 11.2206 0.5806 22 14 10.2926 12.3415 -1.9480 23 1 9.1191 13.0508 -2.5180 24 1 11.2081 13.3259 -1.3170 25 1 11.0103 11.6222 -3.0309 26 6 3.7463 1.9697 -0.1260 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.0955 1.7239 2.1833 31 1 0.8181 2.7047 1.3951 32 1 2.9596 3.9600 2.4443 33 1 2.3630 4.4680 0.8344 34 1 4.4917 4.3039 -0.9782 35 1 5.8641 6.1847 -1.1459 36 1 6.4447 7.6183 1.2173 37 1 7.8338 6.5708 0.8410 38 1 7.5133 6.6324 -2.2095 39 1 8.5202 8.0716 -2.4963 40 1 9.0461 6.8357 -1.3279 41 1 5.7073 9.3529 -0.4222 42 1 6.5709 9.5419 -1.9668 43 1 5.5634 8.1024 -1.6806 44 1 7.8597 9.6380 0.8154 45 1 9.2484 8.5904 0.4381 46 1 10.7390 11.9347 0.8297 47 1 4.0098 2.1872 -1.1610 48 1 4.2706 1.0762 0.2127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806874686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:47 Heat of formation + Delta-G solvation = -78.737942 kcal Electronic energy + Delta-G solvation = -24092.762908 eV Core-core repulsion = 20692.902946 eV Total energy + Delta-G solvation = -3399.859962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27887 -39.37343 -38.35231 -35.22319 -34.68876 -33.69851 -30.04580 -29.76752 -29.19141 -28.55564 -27.93803 -27.09641 -24.79682 -22.19614 -21.87985 -21.41863 -20.19703 -19.03358 -18.34883 -17.67340 -17.38943 -16.60434 -16.52524 -16.13433 -15.86354 -15.38372 -15.31257 -15.03314 -14.66976 -14.55736 -14.33546 -14.21485 -14.04333 -13.91543 -13.81624 -13.04271 -12.86105 -12.81426 -12.74192 -12.57218 -12.46735 -12.30671 -12.20751 -12.15495 -11.99756 -11.97921 -11.75412 -11.51184 -11.35427 -10.95590 -10.84403 -10.77234 -10.49197 -10.31874 -9.71940 -8.65148 -8.12298 -6.20257 0.76642 1.43477 1.45723 1.52856 1.65833 1.76055 2.19452 2.45562 3.21853 3.34168 3.44306 3.50474 3.99966 4.05572 4.11841 4.25190 4.31565 4.33297 4.35605 4.37440 4.39821 4.42981 4.56829 4.71243 4.76131 4.77507 4.81352 4.92350 4.99250 5.01021 5.06283 5.14085 5.14621 5.18564 5.25257 5.42769 5.50941 5.52378 5.56319 5.60998 5.63725 5.82819 5.91524 6.05752 6.32561 6.94638 7.16575 7.47317 7.64255 8.99914 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.042414 B = 0.002011 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.006749 B =13918.559771 C =14112.477463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.304 6.304 3 C -0.045 4.045 4 H 0.108 0.892 5 C -0.108 4.108 6 C -0.129 4.129 7 C 0.163 3.837 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.698 3.302 11 O -0.641 6.641 12 N -0.724 5.724 13 C 0.162 3.838 14 C -0.064 4.064 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.039 3.961 18 C -0.513 4.513 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.960 3.040 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.267 1.267 26 C -0.099 4.099 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.412 0.588 35 H 0.410 0.590 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.071 0.929 44 H -0.015 1.015 45 H -0.015 1.015 46 H 0.259 0.741 47 H 0.098 0.902 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.458 -21.210 -6.539 30.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.076 6.076 3 C -0.174 4.174 4 H 0.126 0.874 5 C -0.148 4.148 6 C -0.170 4.170 7 C 0.057 3.943 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.397 3.603 11 O -0.522 6.522 12 N -0.380 5.380 13 C 0.037 3.963 14 C -0.065 4.065 15 C -0.178 4.178 16 C -0.177 4.177 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.192 1.192 26 C -0.138 4.138 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.249 0.751 35 H 0.248 0.752 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.004 0.996 45 H 0.003 0.997 46 H 0.068 0.932 47 H 0.117 0.883 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.454 -22.103 -5.404 30.596 hybrid contribution -0.076 2.054 -0.583 2.136 sum -20.531 -20.050 -5.987 29.314 Atomic orbital electron populations 1.23415 0.91603 1.07213 1.05835 1.87120 1.10443 1.12075 1.97964 1.23972 0.99368 0.92585 1.01495 0.87417 1.22804 1.00135 0.96136 0.95719 1.22757 0.94821 0.98348 1.01057 1.21392 0.94338 0.85661 0.92930 0.91314 1.45116 1.49576 1.30003 1.13446 1.16195 0.79201 0.80140 0.84727 1.90895 1.67530 1.77303 1.16504 1.45004 1.50266 1.29637 1.13098 1.21026 0.91432 0.88733 0.95082 1.20708 0.96429 0.94252 0.95061 1.21684 0.99204 0.99242 0.97641 1.21679 0.95871 0.99852 1.00333 1.18972 0.92882 0.93022 0.94934 1.21564 1.26262 1.11058 0.96269 0.90852 1.25973 0.97008 1.00242 0.97159 1.70123 1.34849 1.33805 1.19170 0.85580 0.78295 0.78555 0.79077 1.19105 1.21813 1.19154 1.22157 0.93223 0.97097 1.01287 0.89502 0.87498 0.89669 0.90496 0.89655 0.92460 0.90465 0.75076 0.75235 0.94018 0.94088 0.91073 0.92582 0.94585 0.94544 0.92591 0.91054 0.99616 0.99656 0.93221 0.88340 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.72 113.37 1.22 0.38 16 2 S -0.30 -4.07 21.63 -56.49 -1.22 -5.29 16 3 C -0.05 -0.50 3.37 31.70 0.11 -0.39 16 4 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 5 C -0.11 -1.28 6.30 31.91 0.20 -1.08 16 6 C -0.13 -2.13 6.53 31.67 0.21 -1.92 16 7 C 0.16 2.94 3.25 45.71 0.15 3.09 16 8 H 0.07 1.66 7.56 -2.39 -0.02 1.64 16 9 N -0.72 -13.62 5.04 -454.35 -2.29 -15.91 16 10 C 0.70 20.22 8.56 179.06 1.53 21.76 16 11 O -0.64 -25.27 16.00 -4.01 -0.06 -25.34 16 12 N -0.72 -19.58 4.96 -478.52 -2.37 -21.95 16 13 C 0.16 5.84 4.56 86.38 0.39 6.24 16 14 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 15 C -0.12 -3.97 8.05 71.98 0.58 -3.40 16 16 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 17 C 0.04 2.01 4.04 29.85 0.12 2.13 16 18 C -0.51 -27.42 7.65 25.60 0.20 -27.23 16 19 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 20 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 21 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 22 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 C -0.10 -1.24 6.15 31.32 0.19 -1.05 16 27 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 1.04 8.05 -2.39 -0.02 1.02 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 34 H 0.41 4.77 8.33 -92.71 -0.77 4.00 16 35 H 0.41 8.22 6.18 -92.71 -0.57 7.65 16 36 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 39 H 0.06 1.98 6.62 -2.38 -0.02 1.96 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.97 6.62 -2.38 -0.02 1.95 16 43 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 44 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 45 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 46 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.10 0.93 7.62 -2.39 -0.02 0.91 16 48 H 0.08 1.15 7.79 -2.39 -0.02 1.13 16 Total: -1.00 -71.98 387.25 1.87 -70.11 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.40 Total: 17.01 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.91 Total: -7.18 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -4.38 Total: -94.81 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.06 Total: -25.34 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -1.22 Total: -5.29 kcal Total: -71.98 1.87 -70.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806874686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.628 kcal (2) G-P(sol) polarization free energy of solvation -71.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds