Wall clock time and date at job start Tue Mar 31 2020 10:56:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81405 * 1
3 3 C 1.81397 * 102.99885 * 2 1
4 4 H 1.08997 * 110.53824 * 307.61015 * 3 2 1
5 5 C 1.54961 * 110.53129 * 70.24100 * 3 2 1
6 6 C 1.54895 * 102.77671 * 156.56468 * 5 3 2
7 7 C 1.54268 * 104.19476 * 322.08719 * 6 5 3
8 8 H 1.08999 * 110.03048 * 264.32059 * 7 6 5
9 9 N 1.46498 * 110.03046 * 142.89443 * 7 6 5
10 10 C 1.34782 * 120.00281 * 87.82880 * 9 7 6
11 11 O 1.21592 * 119.99707 * 0.02562 * 10 9 7
12 12 N 1.34768 * 120.00041 * 179.97438 * 10 9 7
13 13 C 1.46506 * 120.00076 * 180.02562 * 12 10 9
14 14 C 1.52998 * 109.47272 * 180.02562 * 13 12 10
15 15 C 1.53001 * 109.46935 * 299.99830 * 14 13 12
16 16 C 1.52993 * 109.47005 * 60.00180 * 14 13 12
17 17 C 1.53003 * 109.47059 * 180.02562 * 14 13 12
18 18 C 1.50700 * 109.47200 * 179.97438 * 17 14 13
19 19 H 1.08001 * 119.99609 * 359.97438 * 18 17 14
20 20 C 1.37872 * 119.99913 * 180.02562 * 18 17 14
21 21 N 1.31517 * 120.00363 * 359.97438 * 20 18 17
22 22 Si 1.86806 * 119.99815 * 179.97438 * 20 18 17
23 23 H 1.48492 * 109.47004 * 60.00010 * 22 20 18
24 24 H 1.48504 * 109.46888 * 180.02562 * 22 20 18
25 25 H 1.48498 * 109.46957 * 299.99834 * 22 20 18
26 26 C 1.53869 * 106.60115 * 23.60777 * 7 6 5
27 27 H 1.09006 * 109.46994 * 60.00365 * 1 2 3
28 28 H 1.09000 * 109.46789 * 180.02562 * 1 2 3
29 29 H 1.08993 * 109.47092 * 300.00008 * 1 2 3
30 30 H 1.09001 * 110.71970 * 38.25744 * 5 3 2
31 31 H 1.08991 * 110.92569 * 274.97327 * 5 3 2
32 32 H 1.08997 * 110.48689 * 203.40743 * 6 5 3
33 33 H 1.09000 * 110.59637 * 80.82119 * 6 5 3
34 34 H 0.97003 * 120.00002 * 267.82951 * 9 7 6
35 35 H 0.97003 * 120.00242 * 0.02562 * 12 10 9
36 36 H 1.09004 * 109.46842 * 300.00783 * 13 12 10
37 37 H 1.09005 * 109.46629 * 60.00332 * 13 12 10
38 38 H 1.08997 * 109.46774 * 60.00704 * 15 14 13
39 39 H 1.09006 * 109.46752 * 179.97438 * 15 14 13
40 40 H 1.08996 * 109.47371 * 300.00216 * 15 14 13
41 41 H 1.08998 * 109.47105 * 60.00272 * 16 14 13
42 42 H 1.09007 * 109.46744 * 179.97438 * 16 14 13
43 43 H 1.08997 * 109.47644 * 299.99871 * 16 14 13
44 44 H 1.08997 * 109.46937 * 299.99955 * 17 14 13
45 45 H 1.09005 * 109.46808 * 60.00025 * 17 14 13
46 46 H 0.97001 * 119.99758 * 179.97438 * 21 20 18
47 47 H 1.09002 * 110.03268 * 119.28653 * 26 7 6
48 48 H 1.08995 * 110.03391 * 240.66959 * 26 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 1 1.7011 2.2802 -0.8086
5 6 1.8663 2.4074 1.3657
6 6 2.7906 3.6494 1.4133
7 6 4.1078 3.1654 0.7725
8 1 4.8071 2.8520 1.5476
9 7 4.6978 4.2377 -0.0326
10 6 5.5271 5.1325 0.5404
11 8 5.7859 5.0493 1.7256
12 7 6.0703 6.1186 -0.2003
13 6 6.9721 7.0908 0.4224
14 6 7.4442 8.0958 -0.6302
15 6 8.1843 7.3556 -1.7461
16 6 6.2345 8.8256 -1.2172
17 6 8.3865 9.1107 0.0201
18 6 8.8521 10.1002 -1.0168
19 1 8.5103 10.0135 -2.0376
20 6 9.7150 11.1154 -0.6624
21 7 10.1316 11.2206 0.5806
22 14 10.2926 12.3415 -1.9480
23 1 9.1191 13.0508 -2.5180
24 1 11.2081 13.3259 -1.3170
25 1 11.0103 11.6222 -3.0309
26 6 3.7463 1.9697 -0.1260
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8899
30 1 2.0955 1.7239 2.1833
31 1 0.8181 2.7047 1.3951
32 1 2.9596 3.9600 2.4443
33 1 2.3630 4.4680 0.8344
34 1 4.4917 4.3039 -0.9782
35 1 5.8641 6.1847 -1.1459
36 1 6.4447 7.6183 1.2173
37 1 7.8338 6.5708 0.8410
38 1 7.5133 6.6324 -2.2095
39 1 8.5202 8.0716 -2.4963
40 1 9.0461 6.8357 -1.3279
41 1 5.7073 9.3529 -0.4222
42 1 6.5709 9.5419 -1.9668
43 1 5.5634 8.1024 -1.6806
44 1 7.8597 9.6380 0.8154
45 1 9.2484 8.5904 0.4381
46 1 10.7390 11.9347 0.8297
47 1 4.0098 2.1872 -1.1610
48 1 4.2706 1.0762 0.2127
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000806874686.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:56:47
Heat of formation + Delta-G solvation = -78.737942 kcal
Electronic energy + Delta-G solvation = -24092.762908 eV
Core-core repulsion = 20692.902946 eV
Total energy + Delta-G solvation = -3399.859962 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.27887 -39.37343 -38.35231 -35.22319 -34.68876 -33.69851 -30.04580 -29.76752
-29.19141 -28.55564 -27.93803 -27.09641 -24.79682 -22.19614 -21.87985 -21.41863
-20.19703 -19.03358 -18.34883 -17.67340 -17.38943 -16.60434 -16.52524 -16.13433
-15.86354 -15.38372 -15.31257 -15.03314 -14.66976 -14.55736 -14.33546 -14.21485
-14.04333 -13.91543 -13.81624 -13.04271 -12.86105 -12.81426 -12.74192 -12.57218
-12.46735 -12.30671 -12.20751 -12.15495 -11.99756 -11.97921 -11.75412 -11.51184
-11.35427 -10.95590 -10.84403 -10.77234 -10.49197 -10.31874 -9.71940 -8.65148
-8.12298 -6.20257 0.76642 1.43477 1.45723 1.52856 1.65833 1.76055
2.19452 2.45562 3.21853 3.34168 3.44306 3.50474 3.99966 4.05572
4.11841 4.25190 4.31565 4.33297 4.35605 4.37440 4.39821 4.42981
4.56829 4.71243 4.76131 4.77507 4.81352 4.92350 4.99250 5.01021
5.06283 5.14085 5.14621 5.18564 5.25257 5.42769 5.50941 5.52378
5.56319 5.60998 5.63725 5.82819 5.91524 6.05752 6.32561 6.94638
7.16575 7.47317 7.64255 8.99914
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.042414 B = 0.002011 C = 0.001984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 660.006749 B =13918.559771 C =14112.477463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 S -0.304 6.304
3 C -0.045 4.045
4 H 0.108 0.892
5 C -0.108 4.108
6 C -0.129 4.129
7 C 0.163 3.837
8 H 0.069 0.931
9 N -0.725 5.725
10 C 0.698 3.302
11 O -0.641 6.641
12 N -0.724 5.724
13 C 0.162 3.838
14 C -0.064 4.064
15 C -0.120 4.120
16 C -0.120 4.120
17 C 0.039 3.961
18 C -0.513 4.513
19 H 0.073 0.927
20 C -0.007 4.007
21 N -0.938 5.938
22 Si 0.960 3.040
23 H -0.266 1.266
24 H -0.292 1.292
25 H -0.267 1.267
26 C -0.099 4.099
27 H 0.086 0.914
28 H 0.106 0.894
29 H 0.084 0.916
30 H 0.076 0.924
31 H 0.085 0.915
32 H 0.057 0.943
33 H 0.077 0.923
34 H 0.412 0.588
35 H 0.410 0.590
36 H 0.041 0.959
37 H 0.041 0.959
38 H 0.070 0.930
39 H 0.055 0.945
40 H 0.035 0.965
41 H 0.035 0.965
42 H 0.055 0.945
43 H 0.071 0.929
44 H -0.015 1.015
45 H -0.015 1.015
46 H 0.259 0.741
47 H 0.098 0.902
48 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.458 -21.210 -6.539 30.871
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.281 4.281
2 S -0.076 6.076
3 C -0.174 4.174
4 H 0.126 0.874
5 C -0.148 4.148
6 C -0.170 4.170
7 C 0.057 3.943
8 H 0.087 0.913
9 N -0.381 5.381
10 C 0.397 3.603
11 O -0.522 6.522
12 N -0.380 5.380
13 C 0.037 3.963
14 C -0.065 4.065
15 C -0.178 4.178
16 C -0.177 4.177
17 C 0.002 3.998
18 C -0.552 4.552
19 H 0.091 0.909
20 C -0.204 4.204
21 N -0.579 5.579
22 Si 0.785 3.215
23 H -0.191 1.191
24 H -0.218 1.218
25 H -0.192 1.192
26 C -0.138 4.138
27 H 0.105 0.895
28 H 0.125 0.875
29 H 0.103 0.897
30 H 0.095 0.905
31 H 0.103 0.897
32 H 0.075 0.925
33 H 0.095 0.905
34 H 0.249 0.751
35 H 0.248 0.752
36 H 0.060 0.940
37 H 0.059 0.941
38 H 0.089 0.911
39 H 0.074 0.926
40 H 0.054 0.946
41 H 0.055 0.945
42 H 0.074 0.926
43 H 0.089 0.911
44 H 0.004 0.996
45 H 0.003 0.997
46 H 0.068 0.932
47 H 0.117 0.883
48 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -20.454 -22.103 -5.404 30.596
hybrid contribution -0.076 2.054 -0.583 2.136
sum -20.531 -20.050 -5.987 29.314
Atomic orbital electron populations
1.23415 0.91603 1.07213 1.05835 1.87120 1.10443 1.12075 1.97964
1.23972 0.99368 0.92585 1.01495 0.87417 1.22804 1.00135 0.96136
0.95719 1.22757 0.94821 0.98348 1.01057 1.21392 0.94338 0.85661
0.92930 0.91314 1.45116 1.49576 1.30003 1.13446 1.16195 0.79201
0.80140 0.84727 1.90895 1.67530 1.77303 1.16504 1.45004 1.50266
1.29637 1.13098 1.21026 0.91432 0.88733 0.95082 1.20708 0.96429
0.94252 0.95061 1.21684 0.99204 0.99242 0.97641 1.21679 0.95871
0.99852 1.00333 1.18972 0.92882 0.93022 0.94934 1.21564 1.26262
1.11058 0.96269 0.90852 1.25973 0.97008 1.00242 0.97159 1.70123
1.34849 1.33805 1.19170 0.85580 0.78295 0.78555 0.79077 1.19105
1.21813 1.19154 1.22157 0.93223 0.97097 1.01287 0.89502 0.87498
0.89669 0.90496 0.89655 0.92460 0.90465 0.75076 0.75235 0.94018
0.94088 0.91073 0.92582 0.94585 0.94544 0.92591 0.91054 0.99616
0.99656 0.93221 0.88340 0.90301
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.84 10.72 113.37 1.22 0.38 16
2 S -0.30 -4.07 21.63 -56.49 -1.22 -5.29 16
3 C -0.05 -0.50 3.37 31.70 0.11 -0.39 16
4 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16
5 C -0.11 -1.28 6.30 31.91 0.20 -1.08 16
6 C -0.13 -2.13 6.53 31.67 0.21 -1.92 16
7 C 0.16 2.94 3.25 45.71 0.15 3.09 16
8 H 0.07 1.66 7.56 -2.39 -0.02 1.64 16
9 N -0.72 -13.62 5.04 -454.35 -2.29 -15.91 16
10 C 0.70 20.22 8.56 179.06 1.53 21.76 16
11 O -0.64 -25.27 16.00 -4.01 -0.06 -25.34 16
12 N -0.72 -19.58 4.96 -478.52 -2.37 -21.95 16
13 C 0.16 5.84 4.56 86.38 0.39 6.24 16
14 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16
15 C -0.12 -3.97 8.05 71.98 0.58 -3.40 16
16 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16
17 C 0.04 2.01 4.04 29.85 0.12 2.13 16
18 C -0.51 -27.42 7.65 25.60 0.20 -27.23 16
19 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16
20 C -0.01 -0.39 5.46 84.65 0.46 0.07 16
21 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16
22 Si 0.96 43.47 29.54 68.60 2.03 45.50 16
23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16
25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
26 C -0.10 -1.24 6.15 31.32 0.19 -1.05 16
27 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16
28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16
29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16
30 H 0.08 1.04 8.05 -2.39 -0.02 1.02 16
31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
33 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16
34 H 0.41 4.77 8.33 -92.71 -0.77 4.00 16
35 H 0.41 8.22 6.18 -92.71 -0.57 7.65 16
36 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16
37 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16
38 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16
39 H 0.06 1.98 6.62 -2.38 -0.02 1.96 16
40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
42 H 0.06 1.97 6.62 -2.38 -0.02 1.95 16
43 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16
44 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16
45 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16
46 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16
47 H 0.10 0.93 7.62 -2.39 -0.02 0.91 16
48 H 0.08 1.15 7.79 -2.39 -0.02 1.13 16
Total: -1.00 -71.98 387.25 1.87 -70.11
By element:
Atomic # 1 Polarization: 17.42 SS G_CDS: -0.40 Total: 17.01 kcal
Atomic # 6 Polarization: -13.09 SS G_CDS: 5.91 Total: -7.18 kcal
Atomic # 7 Polarization: -90.43 SS G_CDS: -4.38 Total: -94.81 kcal
Atomic # 8 Polarization: -25.27 SS G_CDS: -0.06 Total: -25.34 kcal
Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal
Atomic # 16 Polarization: -4.07 SS G_CDS: -1.22 Total: -5.29 kcal
Total: -71.98 1.87 -70.11 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000806874686.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.628 kcal
(2) G-P(sol) polarization free energy of solvation -71.976 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds