Wall clock time and date at job start Tue Mar 31 2020 11:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 C 1.52997 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47651 * 54.99793 * 4 3 2 6 6 C 1.52998 * 109.47173 * 294.99981 * 4 3 2 7 7 C 1.50703 * 109.47252 * 175.00233 * 4 3 2 8 8 N 1.29944 * 126.29076 * 60.02046 * 7 4 3 9 9 O 1.21301 * 110.25095 * 179.68657 * 8 7 4 10 10 C 1.33643 * 109.81096 * 0.46885 * 9 8 7 11 11 C 1.50698 * 126.54797 * 179.79612 * 10 9 8 12 12 C 1.53000 * 109.47553 * 269.69069 * 11 10 9 13 13 H 1.08996 * 109.47001 * 305.00705 * 12 11 10 14 14 C 1.50694 * 109.46845 * 65.00215 * 12 11 10 15 15 H 1.08002 * 120.00310 * 35.20679 * 14 12 11 16 16 C 1.37883 * 120.00279 * 215.21237 * 14 12 11 17 17 N 1.31516 * 119.99425 * 5.37309 * 16 14 12 18 18 Si 1.86798 * 120.00451 * 185.37339 * 16 14 12 19 19 H 1.48498 * 109.47005 * 59.99644 * 18 16 14 20 20 H 1.48500 * 109.46837 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47026 * 299.99675 * 18 16 14 22 22 C 1.50699 * 109.47113 * 185.00383 * 12 11 10 23 23 C 1.38226 * 120.00209 * 116.01861 * 22 12 11 24 24 C 1.38236 * 120.00490 * 179.97438 * 23 22 12 25 25 C 1.38233 * 119.99372 * 359.97438 * 24 23 22 26 26 C 1.38234 * 120.00353 * 359.97438 * 25 24 23 27 27 C 1.38236 * 120.00235 * 359.97438 * 26 25 24 28 28 N 1.31126 * 106.89718 * 359.53899 * 10 9 8 29 29 H 1.08993 * 109.47534 * 300.00234 * 1 2 3 30 30 H 1.09000 * 109.47288 * 60.00322 * 1 2 3 31 31 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47250 * 239.99702 * 2 1 3 33 33 H 1.08995 * 109.47240 * 120.00176 * 2 1 3 34 34 H 1.08998 * 109.47295 * 60.00285 * 3 2 1 35 35 H 1.09005 * 109.47149 * 299.99623 * 3 2 1 36 36 H 1.09005 * 109.47252 * 299.99960 * 6 4 3 37 37 H 1.08999 * 109.47390 * 60.00023 * 6 4 3 38 38 H 1.09001 * 109.47101 * 180.02562 * 6 4 3 39 39 H 1.09002 * 109.46728 * 149.68631 * 11 10 9 40 40 H 1.09007 * 109.47297 * 29.69545 * 11 10 9 41 41 H 0.97001 * 119.99697 * 180.02562 * 17 16 14 42 42 H 1.08006 * 119.99962 * 0.24850 * 23 22 12 43 43 H 1.07992 * 120.00287 * 179.97438 * 24 23 22 44 44 H 1.08008 * 120.00080 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.99982 * 179.97438 * 26 25 24 46 46 H 1.07993 * 120.00246 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0722 2.8579 -0.1244 8 7 3.8355 3.8330 0.7012 9 8 4.3870 4.8456 0.3243 10 6 5.0395 4.6078 -0.8175 11 6 5.8461 5.6009 -1.6137 12 6 4.9411 6.2896 -2.6372 13 1 4.4494 5.5361 -3.2524 14 6 3.9001 7.1075 -1.9172 15 1 4.1506 7.6083 -0.9936 16 6 2.6278 7.2164 -2.4373 17 7 2.2916 6.5230 -3.5030 18 14 1.3818 8.3488 -1.6284 19 1 1.8960 9.7418 -1.6434 20 1 0.0993 8.2869 -2.3744 21 1 1.1597 7.9182 -0.2247 22 6 5.7703 7.1916 -3.5144 23 6 5.8770 6.9320 -4.8679 24 6 6.6372 7.7597 -5.6728 25 6 7.2904 8.8474 -5.1241 26 6 7.1829 9.1077 -3.7708 27 6 6.4218 8.2806 -2.9661 28 7 4.8482 3.3439 -1.1096 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8901 36 1 3.7175 1.4220 2.1485 37 1 3.7172 -0.1911 1.3960 38 1 5.1705 0.8331 1.3061 39 1 6.6520 5.0817 -2.1324 40 1 6.2687 6.3479 -0.9416 41 1 1.3967 6.5998 -3.8692 42 1 5.3627 6.0849 -5.2974 43 1 6.7208 7.5566 -6.7301 44 1 7.8847 9.4940 -5.7528 45 1 7.6936 9.9574 -3.3420 46 1 6.3382 8.4838 -1.9087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809358313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:15 Heat of formation + Delta-G solvation = 56.055317 kcal Electronic energy + Delta-G solvation = -25941.264060 eV Core-core repulsion = 22411.805221 eV Total energy + Delta-G solvation = -3529.458839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.77777 -38.53176 -37.21074 -35.24565 -34.43756 -32.61872 -31.64837 -30.69501 -30.09534 -28.45479 -26.67501 -25.72584 -24.35132 -23.31261 -22.22390 -21.73388 -21.24024 -19.97419 -19.28006 -17.24102 -16.79963 -16.61973 -15.95645 -15.39829 -14.79616 -14.60139 -14.34783 -14.19917 -14.01697 -13.82381 -13.33898 -12.96775 -12.64343 -12.60646 -12.46142 -12.23662 -12.11325 -11.88272 -11.81613 -11.60756 -11.31161 -11.11286 -10.99871 -10.94019 -10.81884 -10.77379 -10.55012 -10.49671 -10.36474 -10.28963 -10.19683 -9.65480 -9.30331 -9.01796 -8.59146 -8.13201 -7.75088 -6.17249 -4.21977 1.94197 2.20004 2.25380 2.94259 3.27673 3.31363 3.34935 3.69011 4.11325 4.33481 4.61237 4.64218 4.90286 4.96432 5.07857 5.16940 5.25596 5.32114 5.43853 5.59672 5.64780 5.65638 5.69949 5.76363 5.81255 5.84902 5.91576 5.94323 6.03355 6.07072 6.11372 6.16704 6.19397 6.30381 6.36165 6.37815 6.41531 6.46601 6.66169 6.75717 6.80375 6.92334 7.23050 7.29227 7.37533 7.68950 7.78473 7.88143 8.13739 8.84926 8.93691 9.43516 10.90639 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.003877 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.775366 B = 7220.362139 C = 8119.793616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.005 3.995 5 H 0.096 0.904 6 C -0.143 4.143 7 C 0.166 3.834 8 N -0.397 5.397 9 O 0.081 5.919 10 C 0.237 3.763 11 C -0.021 4.021 12 C 0.069 3.931 13 H 0.078 0.922 14 C -0.518 4.518 15 H 0.062 0.938 16 C 0.074 3.926 17 N -0.880 5.880 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.025 4.025 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.151 4.151 26 C -0.131 4.131 27 C -0.112 4.112 28 N -0.502 5.502 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.264 0.736 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -7.400 3.696 9.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.152 4.152 4 C -0.015 4.015 5 H 0.114 0.886 6 C -0.201 4.201 7 C -0.107 4.107 8 N -0.107 5.107 9 O 0.024 5.976 10 C 0.018 3.982 11 C -0.061 4.061 12 C 0.049 3.951 13 H 0.096 0.904 14 C -0.556 4.556 15 H 0.080 0.920 16 C -0.130 4.130 17 N -0.516 5.516 18 Si 0.714 3.286 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.026 4.026 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.169 4.169 26 C -0.149 4.149 27 C -0.130 4.130 28 N -0.236 5.236 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.046 -7.898 4.051 9.755 hybrid contribution -0.892 1.059 0.082 1.387 sum 3.154 -6.838 4.134 8.591 Atomic orbital electron populations 1.21767 0.95843 1.01327 1.02086 1.21554 0.95919 0.96391 1.02066 1.21660 0.93020 0.97241 1.03247 1.19446 0.95651 0.86342 1.00032 0.88579 1.21861 1.01108 1.00804 0.96327 1.25540 0.97439 0.98536 0.89214 1.74455 1.17907 0.94239 1.24081 1.85264 1.47454 1.30370 1.34495 1.28621 0.92229 0.91853 0.85455 1.20583 0.95739 0.93261 0.96496 1.18061 0.90890 0.94451 0.91693 0.90377 1.20922 0.94471 1.31965 1.08205 0.92001 1.24940 0.98274 0.94997 0.94781 1.69893 1.20285 1.39214 1.22199 0.86707 0.80496 0.81643 0.79704 1.19839 1.21266 1.19925 1.20532 0.92090 0.95813 0.94188 1.21108 0.98700 0.99920 0.93990 1.20993 0.98733 0.96000 0.98864 1.20843 1.02196 0.98646 0.95264 1.21001 1.00343 0.99505 0.94041 1.20985 0.97159 0.95055 0.99825 1.71844 1.19238 1.07537 1.25001 0.92766 0.92598 0.92873 0.91833 0.91732 0.91281 0.91363 0.92020 0.91384 0.92574 0.89568 0.89523 0.92612 0.86681 0.87472 0.87648 0.87447 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.30 5.69 -26.73 -0.15 -1.45 16 3 C -0.11 -1.58 4.66 -26.73 -0.12 -1.70 16 4 C 0.01 0.08 2.86 -91.77 -0.26 -0.18 16 5 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 6 C -0.14 -1.72 8.93 37.16 0.33 -1.39 16 7 C 0.17 3.17 6.72 -156.37 -1.05 2.11 16 8 N -0.40 -8.15 12.16 30.90 0.38 -7.78 16 9 O 0.08 1.73 11.31 18.10 0.20 1.93 16 10 C 0.24 4.89 7.20 -13.06 -0.09 4.80 16 11 C -0.02 -0.40 5.10 -27.88 -0.14 -0.55 16 12 C 0.07 1.54 2.11 -92.93 -0.20 1.34 16 13 H 0.08 2.01 6.97 -51.93 -0.36 1.65 16 14 C -0.52 -12.96 7.20 -34.44 -0.25 -13.20 16 15 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 16 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 17 N -0.88 -24.47 12.76 55.43 0.71 -23.76 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.03 -0.53 4.77 -104.63 -0.50 -1.03 16 23 C -0.12 -2.37 9.67 -39.59 -0.38 -2.75 16 24 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 25 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 26 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 27 C -0.11 -2.12 8.87 -39.58 -0.35 -2.47 16 28 N -0.50 -10.38 11.55 -9.87 -0.11 -10.49 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.61 6.57 -51.93 -0.34 0.26 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.64 6.57 -51.93 -0.34 0.30 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.09 1.46 7.82 -51.93 -0.41 1.06 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.12 2.31 7.95 -52.48 -0.42 1.89 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 46 H 0.12 2.09 7.78 -52.49 -0.41 1.69 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -28.80 383.30 -9.48 -38.29 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.32 Total: 3.84 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -4.09 Total: -23.86 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.97 Total: -42.03 kcal Atomic # 8 Polarization: 1.73 SS G_CDS: 0.20 Total: 1.93 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.80 -9.48 -38.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809358313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.341 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds