Wall clock time and date at job start Tue Mar 31 2020 11:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 C 1.52997 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47651 * 54.99793 * 4 3 2 6 6 C 1.52998 * 109.47173 * 294.99981 * 4 3 2 7 7 C 1.50703 * 109.47252 * 175.00233 * 4 3 2 8 8 N 1.29944 * 126.29076 * 60.02046 * 7 4 3 9 9 O 1.21301 * 110.25095 * 179.68657 * 8 7 4 10 10 C 1.33643 * 109.81096 * 0.46885 * 9 8 7 11 11 C 1.50698 * 126.54797 * 179.79612 * 10 9 8 12 12 C 1.53000 * 109.47553 * 269.69069 * 11 10 9 13 13 H 1.08996 * 109.47001 * 305.00705 * 12 11 10 14 14 C 1.50694 * 109.46845 * 65.00215 * 12 11 10 15 15 H 1.08002 * 120.00310 * 35.20679 * 14 12 11 16 16 C 1.37883 * 120.00279 * 215.21237 * 14 12 11 17 17 N 1.31516 * 119.99425 * 5.37309 * 16 14 12 18 18 Si 1.86798 * 120.00451 * 185.37339 * 16 14 12 19 19 H 1.48498 * 109.47005 * 59.99644 * 18 16 14 20 20 H 1.48500 * 109.46837 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47026 * 299.99675 * 18 16 14 22 22 C 1.50699 * 109.47113 * 185.00383 * 12 11 10 23 23 C 1.38226 * 120.00209 * 116.01861 * 22 12 11 24 24 C 1.38236 * 120.00490 * 179.97438 * 23 22 12 25 25 C 1.38233 * 119.99372 * 359.97438 * 24 23 22 26 26 C 1.38234 * 120.00353 * 359.97438 * 25 24 23 27 27 C 1.38236 * 120.00235 * 359.97438 * 26 25 24 28 28 N 1.31126 * 106.89718 * 359.53899 * 10 9 8 29 29 H 1.08993 * 109.47534 * 300.00234 * 1 2 3 30 30 H 1.09000 * 109.47288 * 60.00322 * 1 2 3 31 31 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47250 * 239.99702 * 2 1 3 33 33 H 1.08995 * 109.47240 * 120.00176 * 2 1 3 34 34 H 1.08998 * 109.47295 * 60.00285 * 3 2 1 35 35 H 1.09005 * 109.47149 * 299.99623 * 3 2 1 36 36 H 1.09005 * 109.47252 * 299.99960 * 6 4 3 37 37 H 1.08999 * 109.47390 * 60.00023 * 6 4 3 38 38 H 1.09001 * 109.47101 * 180.02562 * 6 4 3 39 39 H 1.09002 * 109.46728 * 149.68631 * 11 10 9 40 40 H 1.09007 * 109.47297 * 29.69545 * 11 10 9 41 41 H 0.97001 * 119.99697 * 180.02562 * 17 16 14 42 42 H 1.08006 * 119.99962 * 0.24850 * 23 22 12 43 43 H 1.07992 * 120.00287 * 179.97438 * 24 23 22 44 44 H 1.08008 * 120.00080 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.99982 * 179.97438 * 26 25 24 46 46 H 1.07993 * 120.00246 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0722 2.8579 -0.1244 8 7 3.8355 3.8330 0.7012 9 8 4.3870 4.8456 0.3243 10 6 5.0395 4.6078 -0.8175 11 6 5.8461 5.6009 -1.6137 12 6 4.9411 6.2896 -2.6372 13 1 4.4494 5.5361 -3.2524 14 6 3.9001 7.1075 -1.9172 15 1 4.1506 7.6083 -0.9936 16 6 2.6278 7.2164 -2.4373 17 7 2.2916 6.5230 -3.5030 18 14 1.3818 8.3488 -1.6284 19 1 1.8960 9.7418 -1.6434 20 1 0.0993 8.2869 -2.3744 21 1 1.1597 7.9182 -0.2247 22 6 5.7703 7.1916 -3.5144 23 6 5.8770 6.9320 -4.8679 24 6 6.6372 7.7597 -5.6728 25 6 7.2904 8.8474 -5.1241 26 6 7.1829 9.1077 -3.7708 27 6 6.4218 8.2806 -2.9661 28 7 4.8482 3.3439 -1.1096 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8901 36 1 3.7175 1.4220 2.1485 37 1 3.7172 -0.1911 1.3960 38 1 5.1705 0.8331 1.3061 39 1 6.6520 5.0817 -2.1324 40 1 6.2687 6.3479 -0.9416 41 1 1.3967 6.5998 -3.8692 42 1 5.3627 6.0849 -5.2974 43 1 6.7208 7.5566 -6.7301 44 1 7.8847 9.4940 -5.7528 45 1 7.6936 9.9574 -3.3420 46 1 6.3382 8.4838 -1.9087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809358313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:14 Heat of formation + Delta-G solvation = 41.889125 kcal Electronic energy + Delta-G solvation = -25941.878352 eV Core-core repulsion = 22411.805221 eV Total energy + Delta-G solvation = -3530.073131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.36901 -39.99837 -38.40843 -36.85185 -35.93282 -34.20649 -33.17105 -32.05925 -31.50116 -29.97345 -27.67556 -27.58802 -25.64976 -24.97815 -23.69715 -23.13818 -22.37255 -21.47134 -20.67891 -18.85070 -18.53229 -18.33143 -17.41272 -16.62424 -16.39346 -15.99928 -15.81079 -15.53704 -15.43280 -15.08905 -14.55829 -14.36060 -14.26012 -13.95176 -13.82318 -13.62283 -13.43709 -13.17300 -13.05912 -12.86795 -12.78625 -12.68429 -12.66443 -12.53341 -12.21237 -12.01304 -11.90707 -11.86142 -11.78561 -11.67369 -11.45764 -11.38527 -11.07355 -10.68504 -10.55029 -9.54272 -9.24165 -8.18439 -6.25831 0.32974 0.77855 0.82216 1.35811 1.36526 1.38763 1.42296 2.09960 2.37052 2.74140 3.09419 3.20362 3.27733 3.77646 3.88934 3.96461 4.20245 4.23612 4.30139 4.33806 4.38456 4.43173 4.49676 4.53396 4.58008 4.70070 4.71242 4.78506 4.82035 4.85859 4.94255 4.95254 4.98949 5.06160 5.10016 5.16521 5.21307 5.23477 5.35706 5.38074 5.42402 5.47345 5.57779 5.69181 5.84323 5.91287 6.05936 6.31889 6.44410 6.87924 7.32792 7.40555 8.88588 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.003877 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.775366 B = 7220.362139 C = 8119.793616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.108 4.108 4 C 0.002 3.998 5 H 0.105 0.895 6 C -0.134 4.134 7 C 0.168 3.832 8 N -0.413 5.413 9 O 0.061 5.939 10 C 0.230 3.770 11 C -0.015 4.015 12 C 0.075 3.925 13 H 0.035 0.965 14 C -0.511 4.511 15 H 0.063 0.937 16 C 0.024 3.976 17 N -0.915 5.915 18 Si 0.934 3.066 19 H -0.263 1.263 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.048 4.048 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.144 4.144 26 C -0.126 4.126 27 C -0.124 4.124 28 N -0.521 5.521 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.258 0.742 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 -7.164 4.092 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.147 4.147 4 C -0.018 4.018 5 H 0.123 0.877 6 C -0.192 4.192 7 C -0.105 4.105 8 N -0.126 5.126 9 O 0.008 5.992 10 C 0.011 3.989 11 C -0.054 4.054 12 C 0.055 3.945 13 H 0.053 0.947 14 C -0.548 4.548 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.554 5.554 18 Si 0.760 3.240 19 H -0.187 1.187 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.049 4.049 23 C -0.161 4.161 24 C -0.147 4.147 25 C -0.162 4.162 26 C -0.144 4.144 27 C -0.142 4.142 28 N -0.255 5.255 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.150 0.850 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.620 -7.627 4.458 10.470 hybrid contribution -1.289 0.980 -0.086 1.622 sum 4.331 -6.647 4.372 9.058 Atomic orbital electron populations 1.21784 0.95530 1.02460 1.01377 1.21537 0.96152 0.93931 1.03558 1.21616 0.92541 0.99360 1.01149 1.19767 0.95989 0.84010 1.02062 0.87718 1.21830 1.01117 1.02207 0.94054 1.26404 0.96069 1.00017 0.88034 1.74430 1.18757 0.94462 1.24957 1.85227 1.48015 1.30998 1.34929 1.28997 0.92135 0.92303 0.85428 1.20585 0.95276 0.93515 0.96031 1.17829 0.91197 0.93592 0.91894 0.94704 1.21241 0.94927 1.30814 1.07860 0.91841 1.25582 1.00122 0.96457 0.95477 1.70031 1.20204 1.41216 1.23928 0.85970 0.78776 0.80742 0.78509 1.18733 1.21648 1.20259 1.20346 0.93660 0.96624 0.94282 1.21128 1.00095 1.00598 0.94273 1.21286 0.97761 0.95712 0.99915 1.21299 1.01224 0.98099 0.95587 1.21394 0.99190 0.99659 0.94179 1.21108 0.97642 0.94875 1.00536 1.71867 1.20093 1.07890 1.25686 0.92923 0.93960 0.90775 0.90974 0.89470 0.92324 0.94532 0.92881 0.88029 0.92500 0.87683 0.87273 0.93277 0.88529 0.85012 0.83912 0.84064 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.25 16 2 C -0.11 -2.26 5.69 30.59 0.17 -2.08 16 3 C -0.11 -3.03 4.66 30.59 0.14 -2.88 16 4 C 0.00 0.05 2.86 -11.54 -0.03 0.02 16 5 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 6 C -0.13 -2.99 8.93 71.98 0.64 -2.35 16 7 C 0.17 6.55 6.72 138.46 0.93 7.48 16 8 N -0.41 -17.41 12.16 -60.32 -0.73 -18.15 16 9 O 0.06 2.67 11.31 74.83 0.85 3.52 16 10 C 0.23 9.75 7.20 88.38 0.64 10.39 16 11 C -0.02 -0.58 5.10 29.85 0.15 -0.42 16 12 C 0.07 3.45 2.11 -12.29 -0.03 3.43 16 13 H 0.03 1.90 6.97 -2.39 -0.02 1.88 16 14 C -0.51 -26.11 7.20 25.60 0.18 -25.93 16 15 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 16 C 0.02 1.28 5.45 84.66 0.46 1.75 16 17 N -0.92 -53.26 12.76 21.45 0.27 -52.99 16 18 Si 0.93 44.14 29.54 68.60 2.03 46.17 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 22 C -0.05 -2.02 4.77 -19.87 -0.09 -2.12 16 23 C -0.14 -5.75 9.67 22.27 0.22 -5.53 16 24 C -0.13 -4.24 10.05 22.27 0.22 -4.02 16 25 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 26 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 27 C -0.12 -4.48 8.87 22.27 0.20 -4.28 16 28 N -0.52 -22.13 11.55 -303.20 -3.50 -25.63 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.35 6.57 -2.39 -0.02 1.34 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.10 1.58 6.57 -2.39 -0.02 1.57 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 40 H 0.11 3.64 7.82 -2.38 -0.02 3.62 16 41 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.10 4.12 7.95 -2.91 -0.02 4.10 16 43 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 44 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 45 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 46 H 0.12 4.19 7.78 -2.91 -0.02 4.17 16 Total: -1.00 -65.15 383.30 4.83 -60.32 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.95 Total: 23.14 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.97 Total: -36.38 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -3.96 Total: -96.77 kcal Atomic # 8 Polarization: 2.67 SS G_CDS: 0.85 Total: 3.52 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -65.15 4.83 -60.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809358313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.212 kcal (2) G-P(sol) polarization free energy of solvation -65.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds