Wall clock time and date at job start Tue Mar 31 2020 11:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 120.00275 * 2 1 4 4 C 1.31004 * 120.00162 * 179.97438 * 2 1 3 5 5 C 1.50701 * 119.99678 * 0.02562 * 4 2 1 6 6 H 1.08997 * 115.56144 * 339.66801 * 5 4 2 7 7 C 1.53076 * 117.51034 * 193.97566 * 5 4 2 8 8 H 1.09000 * 117.49732 * 145.03467 * 7 5 4 9 9 C 1.50699 * 117.53564 * 359.97438 * 7 5 4 10 10 O 1.21279 * 119.99449 * 36.09010 * 9 7 5 11 11 N 1.34769 * 120.00495 * 216.09165 * 9 7 5 12 12 C 1.37213 * 119.99978 * 356.65820 * 11 9 7 13 13 H 1.07995 * 120.00062 * 307.12019 * 12 11 9 14 14 C 1.38898 * 120.00253 * 127.11666 * 12 11 9 15 15 N 1.31406 * 119.99950 * 169.46104 * 14 12 11 16 16 Si 1.86797 * 119.99913 * 349.46658 * 14 12 11 17 17 H 1.48495 * 109.47533 * 93.81675 * 16 14 12 18 18 H 1.48500 * 109.46962 * 213.82299 * 16 14 12 19 19 H 1.48504 * 109.47191 * 333.81588 * 16 14 12 20 20 C 1.39426 * 120.00174 * 176.65334 * 11 9 7 21 21 C 1.39062 * 119.69818 * 16.95229 * 20 11 9 22 22 C 1.38380 * 119.10056 * 179.76718 * 21 20 11 23 23 C 1.38826 * 118.49184 * 0.50102 * 22 21 20 24 24 C 1.38148 * 119.31019 * 359.74188 * 23 22 21 25 25 N 1.31880 * 120.85308 * 0.02562 * 24 23 22 26 26 C 1.52994 * 117.50262 * 125.36449 * 5 4 2 27 27 C 1.53007 * 117.49530 * 359.97438 * 26 5 4 28 28 C 1.52998 * 117.49910 * 215.00020 * 26 5 4 29 29 H 1.08996 * 109.47007 * 270.00408 * 1 2 3 30 30 H 1.08999 * 109.46613 * 30.00136 * 1 2 3 31 31 H 1.09001 * 109.46802 * 150.00089 * 1 2 3 32 32 H 1.09002 * 109.47198 * 270.00297 * 3 2 1 33 33 H 1.09005 * 109.46902 * 29.99617 * 3 2 1 34 34 H 1.08996 * 109.47625 * 149.99295 * 3 2 1 35 35 H 1.07998 * 120.00242 * 179.97438 * 4 2 1 36 36 H 0.97007 * 120.00030 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.45239 * 0.02562 * 21 20 11 38 38 H 1.08001 * 120.75630 * 180.22297 * 22 21 20 39 39 H 1.08003 * 120.34721 * 179.72545 * 23 22 21 40 40 H 1.08000 * 119.57367 * 179.97438 * 24 23 22 41 41 H 1.08992 * 109.46942 * 275.57883 * 27 26 5 42 42 H 1.08996 * 109.47178 * 35.58691 * 27 26 5 43 43 H 1.09004 * 109.46932 * 155.58326 * 27 26 5 44 44 H 1.09002 * 109.47052 * 204.23925 * 28 26 5 45 45 H 1.09002 * 109.47260 * 324.24235 * 28 26 5 46 46 H 1.08998 * 109.47398 * 84.24507 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4085 -2.4396 0.0005 6 1 0.3747 -2.3858 0.3417 7 6 2.1958 -3.7106 0.3290 8 1 1.6796 -4.4925 0.8861 9 6 3.6655 -3.5623 0.6272 10 8 4.0667 -2.5892 1.2298 11 7 4.5340 -4.5107 0.2244 12 6 4.0729 -5.6441 -0.3965 13 1 3.3002 -6.2383 0.0685 14 6 4.5998 -6.0273 -1.6232 15 7 4.3151 -7.2100 -2.1200 16 14 5.7132 -4.8613 -2.5667 17 1 7.1310 -5.1556 -2.2375 18 1 5.4959 -5.0407 -4.0247 19 1 5.3976 -3.4604 -2.1880 20 6 5.9012 -4.3404 0.4386 21 6 6.3419 -3.3951 1.3583 22 6 7.7014 -3.2397 1.5646 23 6 8.5769 -4.0308 0.8334 24 6 8.0691 -4.9466 -0.0677 25 7 6.7680 -5.0759 -0.2399 26 6 1.7358 -3.4444 -1.1058 27 6 2.8029 -3.0471 -2.1279 28 6 0.5869 -4.2964 -1.6489 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1748 0.5139 35 1 3.2420 -1.1345 0.0001 36 1 4.6828 -7.4775 -2.9769 37 1 5.6327 -2.7933 1.9073 38 1 8.0730 -2.5161 2.2751 39 1 9.6440 -3.9313 0.9673 40 1 8.7464 -5.5640 -0.6391 41 1 2.3460 -2.4486 -2.9160 42 1 3.5804 -2.4646 -1.6337 43 1 3.2423 -3.9451 -2.5621 44 1 0.9870 -5.2153 -2.0774 45 1 -0.0984 -4.5420 -0.8376 46 1 0.0535 -3.7388 -2.4188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826715895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:58 Heat of formation + Delta-G solvation = 71.355421 kcal Electronic energy + Delta-G solvation = -27779.408854 eV Core-core repulsion = 24250.613478 eV Total energy + Delta-G solvation = -3528.795376 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.61226 -39.17867 -37.29338 -35.31088 -35.04323 -32.03372 -31.74189 -29.82335 -29.17158 -27.69586 -27.34372 -26.49859 -25.14812 -23.76053 -22.64888 -21.45828 -19.58386 -18.63011 -18.11052 -17.58417 -16.39976 -15.87571 -15.75720 -15.13312 -14.71683 -14.56572 -14.21800 -13.84812 -13.72381 -13.57463 -13.52712 -13.18021 -12.78439 -12.77216 -12.47696 -12.36942 -12.26597 -12.09453 -11.79778 -11.75362 -11.55776 -11.46463 -11.25329 -11.10705 -10.89880 -10.57523 -10.37830 -10.02984 -9.83971 -9.64842 -9.23466 -8.96106 -8.90920 -8.57151 -8.12590 -8.00736 -7.35004 -6.31900 -4.28863 1.76253 1.91757 2.46252 3.27005 3.42494 3.43635 3.52011 3.82815 4.36144 4.39968 4.69941 4.89081 5.05190 5.21122 5.23428 5.29174 5.36446 5.38205 5.42605 5.56366 5.65625 5.67844 5.69204 5.76920 5.83820 5.89809 5.91665 5.94920 6.08133 6.09419 6.11581 6.13722 6.26478 6.40237 6.42381 6.45459 6.51105 6.60752 6.64785 6.75155 6.88972 6.89484 7.04179 7.13593 7.30300 7.62828 7.90975 8.22263 8.48474 8.98050 9.27893 9.39996 10.71109 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.006368 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.773783 B = 4396.225901 C = 5612.398503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.163 4.163 3 C -0.108 4.108 4 C -0.101 4.101 5 C -0.108 4.108 6 H 0.111 0.889 7 C -0.131 4.131 8 H 0.125 0.875 9 C 0.534 3.466 10 O -0.554 6.554 11 N -0.389 5.389 12 C -0.364 4.364 13 H 0.104 0.896 14 C 0.107 3.893 15 N -0.863 5.863 16 Si 0.922 3.078 17 H -0.259 1.259 18 H -0.316 1.316 19 H -0.281 1.281 20 C 0.350 3.650 21 C -0.213 4.213 22 C -0.067 4.067 23 C -0.226 4.226 24 C 0.121 3.879 25 N -0.489 5.489 26 C -0.072 4.072 27 C -0.115 4.115 28 C -0.112 4.112 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.274 0.726 37 H 0.177 0.823 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.146 0.854 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 9.611 2.225 10.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.163 4.163 3 C -0.165 4.165 4 C -0.119 4.119 5 C -0.127 4.127 6 H 0.129 0.871 7 C -0.152 4.152 8 H 0.142 0.858 9 C 0.326 3.674 10 O -0.437 6.437 11 N -0.100 5.100 12 C -0.489 4.489 13 H 0.121 0.879 14 C -0.103 4.103 15 N -0.497 5.497 16 Si 0.756 3.244 17 H -0.186 1.186 18 H -0.247 1.247 19 H -0.207 1.207 20 C 0.122 3.878 21 C -0.235 4.235 22 C -0.093 4.093 23 C -0.248 4.248 24 C -0.037 4.037 25 N -0.206 5.206 26 C -0.073 4.073 27 C -0.172 4.172 28 C -0.169 4.169 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.193 0.807 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.876 9.315 1.795 9.913 hybrid contribution 1.110 0.662 0.063 1.294 sum -1.766 9.977 1.858 10.301 Atomic orbital electron populations 1.20789 0.92949 1.01843 1.01336 1.21356 0.95346 0.94786 1.04771 1.20703 0.99613 0.94918 1.01291 1.22325 0.99996 0.91361 0.98228 1.21624 0.98504 0.88892 1.03649 0.87100 1.21943 0.92256 0.99926 1.01035 0.85762 1.19966 0.87521 0.80536 0.79412 1.90316 1.78648 1.31581 1.43119 1.41377 1.00734 1.18112 1.49799 1.18818 1.25644 1.01036 1.03440 0.87865 1.25331 0.94059 0.95236 0.95679 1.69697 1.42577 1.18260 1.19136 0.86279 0.82625 0.80263 0.75265 1.18583 1.24705 1.20672 1.19187 0.87004 0.91509 0.90133 1.23093 0.97288 1.02376 1.00791 1.21418 0.93198 0.97350 0.97370 1.21797 1.00159 1.00863 1.01953 1.22263 0.90735 0.95359 0.95342 1.67124 1.03086 1.26570 1.23838 1.21399 0.98125 0.98544 0.89199 1.21475 0.96788 1.01399 0.97495 1.21299 0.95601 0.99603 1.00379 0.92228 0.92763 0.91678 0.92297 0.92548 0.92098 0.85902 0.91639 0.80694 0.85747 0.85958 0.83662 0.92938 0.92720 0.91172 0.90809 0.92760 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.27 36.01 0.33 -1.01 16 2 C -0.16 -2.35 6.05 -101.07 -0.61 -2.97 16 3 C -0.11 -1.38 10.02 36.00 0.36 -1.02 16 4 C -0.10 -1.72 6.96 -36.03 -0.25 -1.97 16 5 C -0.11 -1.78 4.89 -91.74 -0.45 -2.23 16 6 H 0.11 1.58 6.51 -51.93 -0.34 1.24 16 7 C -0.13 -2.50 4.67 -91.73 -0.43 -2.92 16 8 H 0.12 2.23 8.14 -51.93 -0.42 1.81 16 9 C 0.53 11.83 5.22 -10.99 -0.06 11.77 16 10 O -0.55 -12.42 10.86 5.56 0.06 -12.36 16 11 N -0.39 -9.43 2.19 -60.71 -0.13 -9.56 16 12 C -0.36 -9.46 8.22 -14.90 -0.12 -9.58 16 13 H 0.10 2.83 8.03 -52.49 -0.42 2.41 16 14 C 0.11 2.86 4.66 -17.49 -0.08 2.78 16 15 N -0.86 -24.05 13.96 55.49 0.77 -23.27 16 16 Si 0.92 23.10 21.57 -169.99 -3.67 19.43 16 17 H -0.26 -6.35 5.12 56.52 0.29 -6.06 16 18 H -0.32 -7.96 7.11 56.52 0.40 -7.56 16 19 H -0.28 -7.15 5.86 56.52 0.33 -6.81 16 20 C 0.35 8.36 6.03 -154.64 -0.93 7.42 16 21 C -0.21 -4.50 8.94 -39.22 -0.35 -4.85 16 22 C -0.07 -1.18 10.17 -39.31 -0.40 -1.58 16 23 C -0.23 -3.83 10.11 -39.40 -0.40 -4.22 16 24 C 0.12 2.39 10.06 -17.56 -0.18 2.21 16 25 N -0.49 -11.68 4.68 -12.34 -0.06 -11.74 16 26 C -0.07 -1.28 2.53 -154.51 -0.39 -1.67 16 27 C -0.11 -2.25 7.64 37.16 0.28 -1.97 16 28 C -0.11 -1.72 9.72 37.16 0.36 -1.35 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.57 8.12 -51.93 -0.42 0.14 16 31 H 0.06 0.77 6.38 -51.93 -0.33 0.44 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 35 H 0.12 2.43 5.37 -52.49 -0.28 2.15 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.18 3.75 4.95 -54.06 -0.27 3.48 16 38 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.15 2.49 8.06 -52.49 -0.42 2.06 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 1.17 5.18 -51.93 -0.27 0.90 16 43 H 0.07 1.54 4.73 -51.93 -0.25 1.29 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -29.43 351.39 -8.00 -37.43 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.96 Total: 7.95 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.31 Total: -13.17 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.58 Total: -44.58 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.06 Total: -12.36 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -3.67 Total: 19.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.43 -8.00 -37.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.782 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds