Wall clock time and date at job start Tue Mar 31 2020 11:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 120.00275 * 2 1 4 4 C 1.31004 * 120.00162 * 179.97438 * 2 1 3 5 5 C 1.50701 * 119.99678 * 0.02562 * 4 2 1 6 6 H 1.08997 * 115.56144 * 339.66801 * 5 4 2 7 7 C 1.53076 * 117.51034 * 193.97566 * 5 4 2 8 8 H 1.09000 * 117.49732 * 145.03467 * 7 5 4 9 9 C 1.50699 * 117.53564 * 359.97438 * 7 5 4 10 10 O 1.21279 * 119.99449 * 36.09010 * 9 7 5 11 11 N 1.34769 * 120.00495 * 216.09165 * 9 7 5 12 12 C 1.37213 * 119.99978 * 356.65820 * 11 9 7 13 13 H 1.07995 * 120.00062 * 307.12019 * 12 11 9 14 14 C 1.38898 * 120.00253 * 127.11666 * 12 11 9 15 15 N 1.31406 * 119.99950 * 169.46104 * 14 12 11 16 16 Si 1.86797 * 119.99913 * 349.46658 * 14 12 11 17 17 H 1.48495 * 109.47533 * 93.81675 * 16 14 12 18 18 H 1.48500 * 109.46962 * 213.82299 * 16 14 12 19 19 H 1.48504 * 109.47191 * 333.81588 * 16 14 12 20 20 C 1.39426 * 120.00174 * 176.65334 * 11 9 7 21 21 C 1.39062 * 119.69818 * 16.95229 * 20 11 9 22 22 C 1.38380 * 119.10056 * 179.76718 * 21 20 11 23 23 C 1.38826 * 118.49184 * 0.50102 * 22 21 20 24 24 C 1.38148 * 119.31019 * 359.74188 * 23 22 21 25 25 N 1.31880 * 120.85308 * 0.02562 * 24 23 22 26 26 C 1.52994 * 117.50262 * 125.36449 * 5 4 2 27 27 C 1.53007 * 117.49530 * 359.97438 * 26 5 4 28 28 C 1.52998 * 117.49910 * 215.00020 * 26 5 4 29 29 H 1.08996 * 109.47007 * 270.00408 * 1 2 3 30 30 H 1.08999 * 109.46613 * 30.00136 * 1 2 3 31 31 H 1.09001 * 109.46802 * 150.00089 * 1 2 3 32 32 H 1.09002 * 109.47198 * 270.00297 * 3 2 1 33 33 H 1.09005 * 109.46902 * 29.99617 * 3 2 1 34 34 H 1.08996 * 109.47625 * 149.99295 * 3 2 1 35 35 H 1.07998 * 120.00242 * 179.97438 * 4 2 1 36 36 H 0.97007 * 120.00030 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.45239 * 0.02562 * 21 20 11 38 38 H 1.08001 * 120.75630 * 180.22297 * 22 21 20 39 39 H 1.08003 * 120.34721 * 179.72545 * 23 22 21 40 40 H 1.08000 * 119.57367 * 179.97438 * 24 23 22 41 41 H 1.08992 * 109.46942 * 275.57883 * 27 26 5 42 42 H 1.08996 * 109.47178 * 35.58691 * 27 26 5 43 43 H 1.09004 * 109.46932 * 155.58326 * 27 26 5 44 44 H 1.09002 * 109.47052 * 204.23925 * 28 26 5 45 45 H 1.09002 * 109.47260 * 324.24235 * 28 26 5 46 46 H 1.08998 * 109.47398 * 84.24507 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4085 -2.4396 0.0005 6 1 0.3747 -2.3858 0.3417 7 6 2.1958 -3.7106 0.3290 8 1 1.6796 -4.4925 0.8861 9 6 3.6655 -3.5623 0.6272 10 8 4.0667 -2.5892 1.2298 11 7 4.5340 -4.5107 0.2244 12 6 4.0729 -5.6441 -0.3965 13 1 3.3002 -6.2383 0.0685 14 6 4.5998 -6.0273 -1.6232 15 7 4.3151 -7.2100 -2.1200 16 14 5.7132 -4.8613 -2.5667 17 1 7.1310 -5.1556 -2.2375 18 1 5.4959 -5.0407 -4.0247 19 1 5.3976 -3.4604 -2.1880 20 6 5.9012 -4.3404 0.4386 21 6 6.3419 -3.3951 1.3583 22 6 7.7014 -3.2397 1.5646 23 6 8.5769 -4.0308 0.8334 24 6 8.0691 -4.9466 -0.0677 25 7 6.7680 -5.0759 -0.2399 26 6 1.7358 -3.4444 -1.1058 27 6 2.8029 -3.0471 -2.1279 28 6 0.5869 -4.2964 -1.6489 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1748 0.5139 35 1 3.2420 -1.1345 0.0001 36 1 4.6828 -7.4775 -2.9769 37 1 5.6327 -2.7933 1.9073 38 1 8.0730 -2.5161 2.2751 39 1 9.6440 -3.9313 0.9673 40 1 8.7464 -5.5640 -0.6391 41 1 2.3460 -2.4486 -2.9160 42 1 3.5804 -2.4646 -1.6337 43 1 3.2423 -3.9451 -2.5621 44 1 0.9870 -5.2153 -2.0774 45 1 -0.0984 -4.5420 -0.8376 46 1 0.0535 -3.7388 -2.4188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826715895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:57 Heat of formation + Delta-G solvation = 56.387867 kcal Electronic energy + Delta-G solvation = -27780.057896 eV Core-core repulsion = 24250.613478 eV Total energy + Delta-G solvation = -3529.444418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24584 -40.68038 -38.79843 -36.96631 -36.35415 -34.03193 -33.32146 -31.39475 -30.53588 -28.77652 -28.68705 -27.77559 -27.03320 -25.25478 -24.23275 -22.99754 -21.08323 -20.34376 -19.73820 -18.91160 -17.98890 -17.64933 -17.25147 -16.60132 -16.42576 -16.16932 -15.73844 -15.41287 -15.17751 -15.04049 -14.84372 -14.57521 -14.35386 -14.23118 -14.02748 -13.90066 -13.65832 -13.30896 -13.19240 -13.16858 -13.01189 -12.88583 -12.66388 -12.41931 -12.35361 -12.23548 -11.95039 -11.58778 -11.38601 -11.31215 -10.80725 -10.65046 -10.54270 -10.27506 -9.88540 -9.26224 -9.05580 -8.39060 -6.34450 0.20388 0.36494 1.22726 1.32676 1.42357 1.47908 1.71864 2.20828 2.37559 2.97751 2.99917 3.09843 3.60460 3.77470 3.84426 3.85000 4.03678 4.16085 4.17215 4.20651 4.26533 4.35975 4.40141 4.47638 4.55892 4.69610 4.73446 4.75465 4.79269 4.90293 4.96395 4.98746 5.01299 5.02018 5.08211 5.10852 5.14742 5.22994 5.28327 5.35560 5.39751 5.45691 5.50822 5.86478 5.90250 6.00066 6.11772 6.25494 6.74638 7.07748 7.45770 7.54718 8.66626 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.006368 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.773783 B = 4396.225901 C = 5612.398503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.137 4.137 3 C -0.113 4.113 4 C -0.142 4.142 5 C -0.074 4.074 6 H 0.142 0.858 7 C -0.161 4.161 8 H 0.130 0.870 9 C 0.531 3.469 10 O -0.562 6.562 11 N -0.407 5.407 12 C -0.346 4.346 13 H 0.079 0.921 14 C 0.083 3.917 15 N -0.900 5.900 16 Si 0.968 3.032 17 H -0.252 1.252 18 H -0.326 1.326 19 H -0.295 1.295 20 C 0.315 3.685 21 C -0.229 4.229 22 C -0.057 4.057 23 C -0.200 4.200 24 C 0.099 3.901 25 N -0.531 5.531 26 C -0.079 4.079 27 C -0.108 4.108 28 C -0.105 4.105 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.274 0.726 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 12.094 3.063 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.137 4.137 3 C -0.170 4.170 4 C -0.160 4.160 5 C -0.092 4.092 6 H 0.160 0.840 7 C -0.182 4.182 8 H 0.147 0.853 9 C 0.324 3.676 10 O -0.444 6.444 11 N -0.120 5.120 12 C -0.472 4.472 13 H 0.096 0.904 14 C -0.124 4.124 15 N -0.536 5.536 16 Si 0.802 3.198 17 H -0.179 1.179 18 H -0.258 1.258 19 H -0.222 1.222 20 C 0.088 3.912 21 C -0.251 4.251 22 C -0.083 4.083 23 C -0.221 4.221 24 C -0.057 4.057 25 N -0.249 5.249 26 C -0.079 4.079 27 C -0.165 4.165 28 C -0.162 4.162 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.191 0.809 40 H 0.186 0.814 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.892 11.808 2.652 12.443 hybrid contribution 1.245 0.052 -0.058 1.248 sum -1.647 11.860 2.595 12.252 Atomic orbital electron populations 1.20877 0.90451 1.03142 1.02611 1.21795 0.97167 0.94423 1.00355 1.20792 0.99248 0.94817 1.02105 1.22082 0.98460 0.92647 1.02853 1.21672 0.99111 0.87460 1.00953 0.84035 1.22073 0.90820 1.02563 1.02711 0.85252 1.20441 0.88564 0.80041 0.78579 1.90295 1.79229 1.31640 1.43254 1.41464 1.01632 1.18122 1.50778 1.18505 1.24558 1.01227 1.02946 0.90380 1.25668 0.94807 0.95722 0.96153 1.69751 1.44475 1.19567 1.19789 0.85567 0.82097 0.78453 0.73651 1.17893 1.25838 1.22157 1.19446 0.86770 0.93148 0.91872 1.23115 0.99212 1.02134 1.00670 1.21928 0.91544 0.97463 0.97318 1.22286 1.02555 0.98112 0.99123 1.22876 0.89762 0.96575 0.96526 1.66938 1.04945 1.27699 1.25280 1.21498 0.98257 0.99878 0.88278 1.21358 0.96896 0.99876 0.98404 1.21272 0.95045 0.98243 1.01651 0.90787 0.90689 0.91249 0.91289 0.90028 0.93514 0.89522 0.91620 0.81601 0.81399 0.80892 0.81445 0.90660 0.95232 0.94129 0.93504 0.90628 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.27 71.24 0.66 -1.61 16 2 C -0.14 -3.67 6.05 -16.49 -0.10 -3.77 16 3 C -0.11 -2.64 10.02 71.23 0.71 -1.92 16 4 C -0.14 -4.78 6.96 25.64 0.18 -4.60 16 5 C -0.07 -2.36 4.89 -11.52 -0.06 -2.42 16 6 H 0.14 3.61 6.51 -2.39 -0.02 3.59 16 7 C -0.16 -6.31 4.67 -11.51 -0.05 -6.36 16 8 H 0.13 4.80 8.14 -2.39 -0.02 4.78 16 9 C 0.53 24.60 5.22 87.66 0.46 25.06 16 10 O -0.56 -26.22 10.86 -3.03 -0.03 -26.25 16 11 N -0.41 -20.68 2.19 -464.38 -1.02 -21.70 16 12 C -0.35 -18.99 8.22 84.01 0.69 -18.30 16 13 H 0.08 4.57 8.03 -2.91 -0.02 4.55 16 14 C 0.08 4.64 4.66 84.91 0.40 5.03 16 15 N -0.90 -52.44 13.96 21.65 0.30 -52.13 16 16 Si 0.97 49.97 21.57 68.60 1.48 51.45 16 17 H -0.25 -12.48 5.12 99.48 0.51 -11.97 16 18 H -0.33 -16.89 7.11 99.48 0.71 -16.18 16 19 H -0.29 -15.70 5.86 99.48 0.58 -15.11 16 20 C 0.31 15.41 6.03 132.90 0.80 16.22 16 21 C -0.23 -9.67 8.94 22.50 0.20 -9.47 16 22 C -0.06 -1.83 10.17 22.44 0.23 -1.60 16 23 C -0.20 -6.03 10.11 22.39 0.23 -5.80 16 24 C 0.10 3.78 10.06 84.66 0.85 4.63 16 25 N -0.53 -25.62 4.68 -192.95 -0.90 -26.53 16 26 C -0.08 -2.81 2.53 -52.18 -0.13 -2.94 16 27 C -0.11 -4.40 7.64 71.98 0.55 -3.85 16 28 C -0.11 -3.15 9.72 71.98 0.70 -2.45 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 31 H 0.07 1.35 6.38 -2.39 -0.02 1.33 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.50 8.12 -2.38 -0.02 1.48 16 34 H 0.05 1.22 8.06 -2.39 -0.02 1.20 16 35 H 0.09 3.57 5.37 -2.91 -0.02 3.56 16 36 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 37 H 0.17 7.26 4.95 -27.80 -0.14 7.13 16 38 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 40 H 0.17 5.39 8.06 -2.91 -0.02 5.36 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.03 1.31 5.18 -2.39 -0.01 1.30 16 43 H 0.04 1.86 4.73 -2.38 -0.01 1.85 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 46 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.31 351.39 6.67 -62.63 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.53 Total: 26.70 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 6.31 Total: -14.18 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -1.62 Total: -100.36 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.03 Total: -26.25 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.48 Total: 51.45 kcal Total: -69.31 6.67 -62.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.021 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds