Wall clock time and date at job start Tue Mar 31 2020 10:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47314 * 301.96022 * 3 2 1 5 5 C 1.52998 * 109.47282 * 61.96480 * 3 2 1 6 6 C 1.52999 * 109.46958 * 299.99929 * 5 3 2 7 7 N 1.46903 * 109.46544 * 181.96154 * 3 2 1 8 8 C 1.46894 * 111.00149 * 60.00448 * 7 3 2 9 9 C 1.50707 * 109.46958 * 179.97438 * 8 7 3 10 10 O 1.21278 * 120.00247 * 354.62544 * 9 8 7 11 11 N 1.34780 * 119.99557 * 174.62639 * 9 8 7 12 12 C 1.46498 * 119.99661 * 184.39719 * 11 9 8 13 13 C 1.50707 * 109.46936 * 270.00210 * 12 11 9 14 14 H 1.08001 * 120.00039 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99626 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00287 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99539 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47034 * 90.00098 * 17 15 13 19 19 H 1.48503 * 109.47088 * 209.99482 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99888 * 17 15 13 21 21 C 1.39924 * 120.00217 * 4.39521 * 11 9 8 22 22 C 1.38868 * 120.06826 * 66.58948 * 21 11 9 23 23 C 1.38118 * 119.93050 * 179.97438 * 22 21 11 24 24 C 1.38279 * 120.06507 * 0.02562 * 23 22 21 25 25 C 1.38281 * 120.14322 * 359.95344 * 24 23 22 26 26 C 1.38108 * 120.07149 * 0.04792 * 25 24 23 27 27 H 4.44645 * 5.63429 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47339 * 300.00215 * 4 3 2 29 29 H 1.09003 * 109.46923 * 60.00244 * 4 3 2 30 30 H 1.09003 * 109.46844 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47383 * 59.99562 * 5 3 2 32 32 H 1.08999 * 109.47482 * 179.97438 * 5 3 2 33 33 H 1.09003 * 109.46774 * 300.00006 * 6 5 3 34 34 H 1.09003 * 109.47564 * 59.99668 * 6 5 3 35 35 H 1.09002 * 109.47604 * 180.02562 * 6 5 3 36 36 H 1.00898 * 111.00340 * 296.04380 * 7 3 2 37 37 H 1.08998 * 109.47315 * 59.99647 * 8 7 3 38 38 H 1.08998 * 109.46952 * 299.99243 * 8 7 3 39 39 H 1.08995 * 109.47314 * 29.99682 * 12 11 9 40 40 H 1.09002 * 109.47110 * 150.00257 * 12 11 9 41 41 H 0.97008 * 119.99962 * 180.02562 * 16 15 13 42 42 H 1.08007 * 120.03774 * 359.69782 * 22 21 11 43 43 H 1.07998 * 119.96687 * 179.97438 * 23 22 21 44 44 H 1.08005 * 119.92716 * 179.97438 * 24 23 22 45 45 H 1.08012 * 119.96213 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.03639 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7626 1.2238 5 6 3.1563 -0.6771 -1.2732 6 6 2.6470 -2.1190 -1.3226 7 7 3.1349 1.3851 0.0474 8 6 2.6636 2.0687 1.2592 9 6 3.1845 3.4828 1.2730 10 8 3.9581 3.8525 0.4153 11 7 2.7907 4.3365 2.2388 12 6 3.2201 5.7366 2.1983 13 6 4.5195 5.8853 2.9472 14 1 4.9792 5.0232 3.4075 15 6 5.1207 7.1222 3.0454 16 7 4.5607 8.1720 2.4853 17 14 6.7310 7.3066 3.9742 18 1 7.8673 7.1043 3.0398 19 1 6.8101 8.6680 4.5622 20 1 6.7957 6.2944 5.0588 21 6 1.9718 3.8856 3.2799 22 6 2.4585 2.9661 4.1997 23 6 1.6479 2.5234 5.2265 24 6 0.3526 2.9944 5.3389 25 6 -0.1349 3.9104 4.4248 26 6 0.6707 4.3570 3.3957 27 1 -1.0499 0.0000 0.0004 28 1 2.7928 -0.2798 2.1308 29 1 2.7935 -1.7899 1.1886 30 1 4.2464 -0.7617 1.2239 31 1 2.7927 -0.1333 -2.1451 32 1 4.2463 -0.6762 -1.2735 33 1 3.0106 -2.6628 -0.4507 34 1 1.5569 -2.1195 -1.3226 35 1 3.0109 -2.6021 -2.2295 36 1 2.8652 1.8925 -0.7820 37 1 3.0274 1.5392 2.1398 38 1 1.5738 2.0825 1.2679 39 1 3.3608 6.0437 1.1621 40 1 2.4591 6.3636 2.6630 41 1 4.9840 9.0421 2.5542 42 1 3.4685 2.5942 4.1096 43 1 2.0257 1.8080 5.9420 44 1 -0.2795 2.6464 6.1425 45 1 -1.1469 4.2767 4.5156 46 1 0.2892 5.0721 2.6819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852097909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:18 Heat of formation + Delta-G solvation = 52.634280 kcal Electronic energy + Delta-G solvation = -26344.455572 eV Core-core repulsion = 22814.848386 eV Total energy + Delta-G solvation = -3529.607186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.01506 -38.72104 -37.81144 -34.84448 -33.20959 -32.60098 -32.04178 -30.71279 -29.42282 -29.04157 -27.85051 -26.28504 -23.93056 -22.72380 -22.31025 -21.86375 -21.64683 -19.03458 -17.90438 -17.16835 -16.55796 -16.16842 -15.89583 -15.48772 -15.09361 -15.01319 -14.66070 -14.39253 -14.10844 -13.93862 -13.65077 -13.15817 -13.01872 -12.69733 -12.59075 -12.35221 -12.23377 -12.14009 -11.93496 -11.62123 -11.44828 -11.20917 -11.17646 -10.96238 -10.93482 -10.83273 -10.63951 -10.50968 -10.19295 -10.15725 -9.72568 -9.28008 -8.74982 -8.68656 -8.46140 -8.41629 -7.65293 -6.04852 -4.08909 1.56022 1.63500 2.68088 2.73229 3.29174 3.32729 3.38412 3.41613 3.62693 4.02028 4.11489 4.32099 4.46226 4.76308 4.84176 5.00772 5.16085 5.17341 5.18317 5.30504 5.34653 5.35922 5.41659 5.47020 5.53231 5.64490 5.68204 5.80315 5.81049 5.85051 5.87028 5.91299 6.03182 6.14330 6.17656 6.24845 6.58525 6.71854 6.79150 6.83007 7.02498 7.18978 7.32565 7.35465 7.48854 7.50181 7.90720 8.19407 8.34825 8.86197 9.00379 9.55509 11.03580 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.004314 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.581215 B = 6488.906614 C = 7815.983883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.220 3.780 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.152 4.152 7 N -0.650 5.650 8 C 0.038 3.962 9 C 0.511 3.489 10 O -0.510 6.510 11 N -0.563 5.563 12 C 0.250 3.750 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.166 3.834 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.136 4.136 25 C -0.109 4.109 26 C -0.126 4.126 27 H 0.214 0.786 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.352 0.648 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 -18.279 -0.333 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.207 4.207 3 C 0.129 3.871 4 C -0.198 4.198 5 C -0.145 4.145 6 C -0.210 4.210 7 N -0.281 5.281 8 C -0.094 4.094 9 C 0.298 3.702 10 O -0.385 6.385 11 N -0.292 5.292 12 C 0.132 3.868 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.074 3.926 22 C -0.146 4.146 23 C -0.128 4.128 24 C -0.154 4.154 25 C -0.128 4.128 26 C -0.146 4.146 27 H 0.231 0.769 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.172 0.828 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.146 -17.979 -0.605 20.181 hybrid contribution -0.354 0.575 0.483 0.830 sum -9.500 -17.404 -0.122 19.829 Atomic orbital electron populations 1.24988 0.95949 1.00087 1.01044 1.24377 0.95516 1.00668 1.00109 1.18240 0.81365 0.90115 0.97360 1.21958 1.02343 0.99456 0.96050 1.21509 1.01921 0.95623 0.95446 1.21838 1.01311 0.95940 1.01884 1.60543 1.61520 1.01016 1.04979 1.21973 0.98574 0.93512 0.95349 1.20261 0.81574 0.86368 0.82014 1.90696 1.32749 1.77237 1.37775 1.45992 1.47887 1.13203 1.22162 1.19414 0.95233 0.73137 0.99015 1.21361 1.06668 0.94287 1.33877 0.92367 1.24904 0.97766 0.95586 0.95713 1.69928 1.39471 0.99672 1.44386 0.86483 0.83712 0.77251 0.79921 1.20466 1.21139 1.19885 1.17744 0.89681 0.95187 0.90018 1.21371 0.99732 0.99198 0.94332 1.20966 0.94039 1.00059 0.97711 1.21045 0.96051 0.98726 0.99580 1.20958 0.99506 0.97529 0.94769 1.21302 0.92899 1.01030 0.99382 0.76918 0.92168 0.91605 0.90595 0.91660 0.89856 0.92182 0.92714 0.92472 0.82798 0.87975 0.92565 0.93587 0.94741 0.92697 0.85930 0.86148 0.86425 0.86154 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 19.25 29.55 0.57 -1.63 16 2 C -0.20 -2.47 9.27 -37.12 -0.34 -2.81 16 3 C 0.22 2.62 0.69 -134.39 -0.09 2.53 16 4 C -0.14 -1.51 7.84 37.15 0.29 -1.22 16 5 C -0.11 -1.09 5.23 -26.73 -0.14 -1.23 16 6 C -0.15 -1.29 9.31 37.16 0.35 -0.94 16 7 N -0.65 -9.70 5.67 -104.08 -0.59 -10.29 16 8 C 0.04 0.62 4.14 -4.98 -0.02 0.59 16 9 C 0.51 10.84 7.56 -10.98 -0.08 10.76 16 10 O -0.51 -12.83 15.90 5.56 0.09 -12.75 16 11 N -0.56 -12.29 2.51 -114.74 -0.29 -12.58 16 12 C 0.25 6.61 5.07 -5.19 -0.03 6.58 16 13 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 17 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.17 3.05 4.43 -83.70 -0.37 2.68 16 22 C -0.13 -2.06 8.44 -39.39 -0.33 -2.40 16 23 C -0.11 -1.45 10.04 -39.61 -0.40 -1.85 16 24 C -0.14 -1.68 10.04 -39.55 -0.40 -2.08 16 25 C -0.11 -1.45 10.04 -39.61 -0.40 -1.85 16 26 C -0.13 -2.05 9.63 -39.40 -0.38 -2.43 16 27 H 0.21 1.62 7.80 -54.10 -0.42 1.19 16 28 H 0.06 0.67 6.40 -51.93 -0.33 0.34 16 29 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 34 H 0.05 0.49 7.23 -51.93 -0.38 0.11 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.35 5.44 8.49 -39.29 -0.33 5.10 16 37 H 0.10 1.56 5.12 -51.93 -0.27 1.29 16 38 H 0.06 0.88 6.98 -51.93 -0.36 0.52 16 39 H 0.05 1.35 7.49 -51.93 -0.39 0.96 16 40 H 0.03 0.93 7.82 -51.93 -0.41 0.53 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.12 2.01 7.88 -52.48 -0.41 1.60 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 45 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 46 H 0.12 1.98 8.06 -52.48 -0.42 1.55 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -33.05 383.04 -8.39 -41.45 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.90 Total: 6.22 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.20 Total: -8.97 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.14 Total: -48.92 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.05 -8.39 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852097909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.083 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds