Wall clock time and date at job start Tue Mar 31 2020 10:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47314 * 301.96022 * 3 2 1 5 5 C 1.52998 * 109.47282 * 61.96480 * 3 2 1 6 6 C 1.52999 * 109.46958 * 299.99929 * 5 3 2 7 7 N 1.46903 * 109.46544 * 181.96154 * 3 2 1 8 8 C 1.46894 * 111.00149 * 60.00448 * 7 3 2 9 9 C 1.50707 * 109.46958 * 179.97438 * 8 7 3 10 10 O 1.21278 * 120.00247 * 354.62544 * 9 8 7 11 11 N 1.34780 * 119.99557 * 174.62639 * 9 8 7 12 12 C 1.46498 * 119.99661 * 184.39719 * 11 9 8 13 13 C 1.50707 * 109.46936 * 270.00210 * 12 11 9 14 14 H 1.08001 * 120.00039 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99626 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00287 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99539 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47034 * 90.00098 * 17 15 13 19 19 H 1.48503 * 109.47088 * 209.99482 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99888 * 17 15 13 21 21 C 1.39924 * 120.00217 * 4.39521 * 11 9 8 22 22 C 1.38868 * 120.06826 * 66.58948 * 21 11 9 23 23 C 1.38118 * 119.93050 * 179.97438 * 22 21 11 24 24 C 1.38279 * 120.06507 * 0.02562 * 23 22 21 25 25 C 1.38281 * 120.14322 * 359.95344 * 24 23 22 26 26 C 1.38108 * 120.07149 * 0.04792 * 25 24 23 27 27 H 4.44645 * 5.63429 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47339 * 300.00215 * 4 3 2 29 29 H 1.09003 * 109.46923 * 60.00244 * 4 3 2 30 30 H 1.09003 * 109.46844 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47383 * 59.99562 * 5 3 2 32 32 H 1.08999 * 109.47482 * 179.97438 * 5 3 2 33 33 H 1.09003 * 109.46774 * 300.00006 * 6 5 3 34 34 H 1.09003 * 109.47564 * 59.99668 * 6 5 3 35 35 H 1.09002 * 109.47604 * 180.02562 * 6 5 3 36 36 H 1.00898 * 111.00340 * 296.04380 * 7 3 2 37 37 H 1.08998 * 109.47315 * 59.99647 * 8 7 3 38 38 H 1.08998 * 109.46952 * 299.99243 * 8 7 3 39 39 H 1.08995 * 109.47314 * 29.99682 * 12 11 9 40 40 H 1.09002 * 109.47110 * 150.00257 * 12 11 9 41 41 H 0.97008 * 119.99962 * 180.02562 * 16 15 13 42 42 H 1.08007 * 120.03774 * 359.69782 * 22 21 11 43 43 H 1.07998 * 119.96687 * 179.97438 * 23 22 21 44 44 H 1.08005 * 119.92716 * 179.97438 * 24 23 22 45 45 H 1.08012 * 119.96213 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.03639 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7626 1.2238 5 6 3.1563 -0.6771 -1.2732 6 6 2.6470 -2.1190 -1.3226 7 7 3.1349 1.3851 0.0474 8 6 2.6636 2.0687 1.2592 9 6 3.1845 3.4828 1.2730 10 8 3.9581 3.8525 0.4153 11 7 2.7907 4.3365 2.2388 12 6 3.2201 5.7366 2.1983 13 6 4.5195 5.8853 2.9472 14 1 4.9792 5.0232 3.4075 15 6 5.1207 7.1222 3.0454 16 7 4.5607 8.1720 2.4853 17 14 6.7310 7.3066 3.9742 18 1 7.8673 7.1043 3.0398 19 1 6.8101 8.6680 4.5622 20 1 6.7957 6.2944 5.0588 21 6 1.9718 3.8856 3.2799 22 6 2.4585 2.9661 4.1997 23 6 1.6479 2.5234 5.2265 24 6 0.3526 2.9944 5.3389 25 6 -0.1349 3.9104 4.4248 26 6 0.6707 4.3570 3.3957 27 1 -1.0499 0.0000 0.0004 28 1 2.7928 -0.2798 2.1308 29 1 2.7935 -1.7899 1.1886 30 1 4.2464 -0.7617 1.2239 31 1 2.7927 -0.1333 -2.1451 32 1 4.2463 -0.6762 -1.2735 33 1 3.0106 -2.6628 -0.4507 34 1 1.5569 -2.1195 -1.3226 35 1 3.0109 -2.6021 -2.2295 36 1 2.8652 1.8925 -0.7820 37 1 3.0274 1.5392 2.1398 38 1 1.5738 2.0825 1.2679 39 1 3.3608 6.0437 1.1621 40 1 2.4591 6.3636 2.6630 41 1 4.9840 9.0421 2.5542 42 1 3.4685 2.5942 4.1096 43 1 2.0257 1.8080 5.9420 44 1 -0.2795 2.6464 6.1425 45 1 -1.1469 4.2767 4.5156 46 1 0.2892 5.0721 2.6819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852097909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:17 Heat of formation + Delta-G solvation = 32.638231 kcal Electronic energy + Delta-G solvation = -26345.322666 eV Core-core repulsion = 22814.848386 eV Total energy + Delta-G solvation = -3530.474280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50426 -39.81535 -39.12835 -36.53211 -34.85174 -34.19437 -32.88143 -31.86684 -30.94701 -30.05509 -29.32503 -27.79838 -25.32311 -24.26626 -23.49222 -23.25168 -22.49910 -20.51021 -19.00945 -18.75223 -18.32538 -17.54575 -17.28679 -16.87388 -16.37802 -16.27197 -16.00512 -15.63974 -15.49983 -15.17106 -14.80049 -14.46837 -14.34805 -14.29663 -13.74125 -13.58003 -13.54772 -13.40310 -13.10311 -13.01511 -12.89763 -12.67654 -12.49176 -12.40040 -12.16750 -12.12273 -12.01675 -11.74419 -11.71158 -11.42406 -11.04896 -10.93647 -10.68636 -10.17423 -9.84486 -9.74178 -9.23128 -8.26201 -6.40842 0.35363 0.49160 1.33668 1.37249 1.46585 1.64407 1.76610 1.86763 2.10852 2.37245 2.85395 3.03624 3.08041 3.36260 3.59861 3.87553 4.01857 4.04600 4.11198 4.20829 4.29131 4.32104 4.43510 4.55175 4.59166 4.64422 4.66349 4.74799 4.74958 4.97374 4.99796 5.06181 5.07472 5.10861 5.13259 5.14355 5.34516 5.39341 5.40297 5.52889 5.61467 5.65165 5.74957 5.83107 5.98952 6.06697 6.13700 6.63804 6.64832 6.70479 7.20771 7.34941 8.81170 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.004314 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.581215 B = 6488.906614 C = 7815.983883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.238 4.238 3 C 0.219 3.781 4 C -0.139 4.139 5 C -0.106 4.106 6 C -0.145 4.145 7 N -0.663 5.663 8 C 0.065 3.935 9 C 0.502 3.498 10 O -0.564 6.564 11 N -0.564 5.564 12 C 0.268 3.732 13 C -0.541 4.541 14 H 0.050 0.950 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.968 3.032 18 H -0.278 1.278 19 H -0.272 1.272 20 H -0.263 1.263 21 C 0.126 3.874 22 C -0.139 4.139 23 C -0.101 4.101 24 C -0.120 4.120 25 C -0.102 4.102 26 C -0.143 4.143 27 H 0.243 0.757 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.345 0.655 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.003 0.997 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.113 0.887 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.153 0.847 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 -20.680 2.181 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.240 4.240 3 C 0.129 3.871 4 C -0.196 4.196 5 C -0.144 4.144 6 C -0.203 4.203 7 N -0.293 5.293 8 C -0.067 4.067 9 C 0.291 3.709 10 O -0.442 6.442 11 N -0.292 5.292 12 C 0.148 3.852 13 C -0.579 4.579 14 H 0.069 0.931 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.791 3.209 18 H -0.204 1.204 19 H -0.197 1.197 20 H -0.188 1.188 21 C 0.035 3.965 22 C -0.158 4.158 23 C -0.120 4.120 24 C -0.138 4.138 25 C -0.121 4.121 26 C -0.162 4.162 27 H 0.259 0.741 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.021 0.979 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.172 0.828 44 H 0.178 0.822 45 H 0.170 0.830 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.556 -20.421 1.941 23.070 hybrid contribution -0.063 1.297 -0.271 1.327 sum -10.619 -19.123 1.671 21.938 Atomic orbital electron populations 1.25739 0.96762 0.98440 0.99686 1.24479 0.95913 1.02150 1.01455 1.18339 0.81887 0.88216 0.98688 1.21971 1.02197 1.00357 0.95120 1.21516 1.01736 0.96706 0.94432 1.21792 1.01018 0.94555 1.02931 1.60577 1.62276 1.02440 1.04045 1.21703 0.98512 0.89979 0.96485 1.21212 0.80700 0.88122 0.80826 1.90649 1.35318 1.78593 1.39629 1.45809 1.48364 1.11462 1.23599 1.18819 0.94435 0.76159 0.95823 1.21591 1.07669 0.94367 1.34302 0.93137 1.25830 1.01431 0.95126 0.96494 1.70042 1.41110 1.00221 1.45309 0.85417 0.78776 0.77973 0.78690 1.20359 1.19683 1.18765 1.18021 0.90333 0.97698 0.90455 1.21397 0.99990 0.99315 0.95131 1.21353 0.94071 0.99827 0.96726 1.21556 0.95858 0.96826 0.99520 1.21334 1.00405 0.96957 0.93381 1.21376 0.92749 1.01421 1.00682 0.74093 0.92737 0.89568 0.90846 0.92304 0.90133 0.91296 0.93030 0.91289 0.83630 0.86793 0.91816 0.97870 0.96089 0.92281 0.86941 0.82798 0.82186 0.82974 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.70 19.25 74.32 1.43 -2.27 16 2 C -0.24 -5.47 9.27 31.13 0.29 -5.18 16 3 C 0.22 5.13 0.69 1.72 0.00 5.13 16 4 C -0.14 -2.83 7.84 71.98 0.56 -2.26 16 5 C -0.11 -2.13 5.23 30.59 0.16 -1.97 16 6 C -0.15 -2.22 9.31 71.98 0.67 -1.55 16 7 N -0.66 -20.52 5.67 -483.21 -2.74 -23.26 16 8 C 0.07 2.17 4.14 85.56 0.35 2.53 16 9 C 0.50 22.73 7.56 87.66 0.66 23.39 16 10 O -0.56 -30.58 15.90 -3.02 -0.05 -30.63 16 11 N -0.56 -26.20 2.51 -635.31 -1.60 -27.80 16 12 C 0.27 15.20 5.07 85.64 0.43 15.64 16 13 C -0.54 -32.56 9.39 25.60 0.24 -32.32 16 14 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.61 5.46 84.66 0.46 1.07 16 16 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 17 Si 0.97 46.25 29.54 68.60 2.03 48.27 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 21 C 0.13 4.72 4.43 38.15 0.17 4.89 16 22 C -0.14 -4.43 8.44 22.39 0.19 -4.24 16 23 C -0.10 -2.35 10.04 22.25 0.22 -2.13 16 24 C -0.12 -2.42 10.04 22.29 0.22 -2.20 16 25 C -0.10 -2.42 10.04 22.25 0.22 -2.20 16 26 C -0.14 -4.64 9.63 22.39 0.22 -4.42 16 27 H 0.24 2.92 7.80 -4.42 -0.03 2.89 16 28 H 0.05 1.15 6.40 -2.39 -0.02 1.14 16 29 H 0.09 1.38 6.43 -2.39 -0.02 1.36 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.07 0.93 6.43 -2.39 -0.02 0.91 16 34 H 0.05 0.83 7.23 -2.39 -0.02 0.81 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.34 11.34 8.49 -89.70 -0.76 10.58 16 37 H 0.11 3.52 5.12 -2.39 -0.01 3.51 16 38 H 0.06 2.03 6.98 -2.39 -0.02 2.01 16 39 H 0.00 0.21 7.49 -2.39 -0.02 0.19 16 40 H 0.02 1.23 7.82 -2.39 -0.02 1.21 16 41 H 0.27 15.48 8.31 -92.70 -0.77 14.70 16 42 H 0.11 3.73 7.88 -2.91 -0.02 3.70 16 43 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 44 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.15 2.61 8.06 -2.90 -0.02 2.59 16 46 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -76.58 383.04 4.65 -71.93 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.21 Total: 26.59 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 6.51 Total: -8.08 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -4.05 Total: -108.09 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.05 Total: -30.63 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -76.58 4.65 -71.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852097909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.565 kcal (2) G-P(sol) polarization free energy of solvation -76.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds