Wall clock time and date at job start Tue Mar 31 2020 10:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47161 * 42.59936 * 3 2 1 5 5 C 1.52993 * 109.47174 * 282.59607 * 3 2 1 6 6 C 1.53002 * 109.47344 * 300.00216 * 5 3 2 7 7 N 1.46899 * 109.46612 * 162.59526 * 3 2 1 8 8 C 1.46902 * 110.99862 * 179.97438 * 7 3 2 9 9 C 1.50692 * 109.47382 * 180.02562 * 8 7 3 10 10 O 1.21286 * 120.00107 * 5.14364 * 9 8 7 11 11 N 1.34777 * 120.00371 * 185.14372 * 9 8 7 12 12 C 1.46503 * 120.00253 * 185.19183 * 11 9 8 13 13 C 1.50696 * 109.46696 * 90.00321 * 12 11 9 14 14 H 1.07998 * 120.00473 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99442 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00341 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99748 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47283 * 59.99407 * 17 15 13 19 19 H 1.48499 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46683 * 299.99176 * 17 15 13 21 21 C 1.39925 * 119.99573 * 5.19465 * 11 9 8 22 22 C 1.38877 * 120.07134 * 292.33910 * 21 11 9 23 23 C 1.38114 * 119.92798 * 179.75010 * 22 21 11 24 24 C 1.38280 * 120.07153 * 0.53077 * 23 22 21 25 25 C 1.38281 * 120.13921 * 359.74545 * 24 23 22 26 26 C 1.38114 * 120.07493 * 359.97438 * 25 24 23 27 27 H 4.44654 * 5.63274 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47027 * 299.99846 * 4 3 2 29 29 H 1.09001 * 109.47167 * 59.99858 * 4 3 2 30 30 H 1.08998 * 109.46997 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47458 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47416 * 60.00433 * 5 3 2 33 33 H 1.09001 * 109.47167 * 179.97438 * 6 5 3 34 34 H 1.08991 * 109.47307 * 300.00098 * 6 5 3 35 35 H 1.09006 * 109.46990 * 60.00336 * 6 5 3 36 36 H 1.00901 * 110.99940 * 56.04954 * 7 3 2 37 37 H 1.09000 * 109.47041 * 300.00888 * 8 7 3 38 38 H 1.09004 * 109.47108 * 60.00259 * 8 7 3 39 39 H 1.08998 * 109.47029 * 209.99990 * 12 11 9 40 40 H 1.08994 * 109.47032 * 330.00122 * 12 11 9 41 41 H 0.97001 * 119.99956 * 180.02562 * 16 15 13 42 42 H 1.08001 * 120.03292 * 0.02701 * 22 21 11 43 43 H 1.07996 * 119.96238 * 180.27761 * 23 22 21 44 44 H 1.08003 * 119.93115 * 179.72202 * 24 23 22 45 45 H 1.08008 * 119.96079 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.03804 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0610 -0.9764 5 6 3.1561 -0.3137 1.4077 6 6 2.6456 0.7479 2.3841 7 7 3.1350 1.3225 -0.4143 8 6 4.6034 1.3608 -0.4255 9 6 5.0670 2.7292 -0.8537 10 8 4.2581 3.6150 -1.0329 11 7 6.3805 2.9689 -1.0376 12 6 6.8420 4.3254 -1.3426 13 6 7.1469 5.0528 -0.0585 14 1 7.0102 4.5546 0.8899 15 6 7.5994 6.3547 -0.0944 16 7 7.7654 6.9616 -1.2493 17 14 7.9780 7.2561 1.4973 18 1 9.0389 6.5278 2.2383 19 1 8.4457 8.6313 1.1882 20 1 6.7508 7.3258 2.3306 21 6 7.3034 1.9219 -0.9374 22 6 7.5369 1.3153 0.2899 23 6 8.4447 0.2786 0.3845 24 6 9.1287 -0.1481 -0.7390 25 6 8.9026 0.4577 -1.9613 26 6 7.9919 1.4910 -2.0638 27 1 -1.0499 0.0000 -0.0003 28 1 2.7936 -2.0417 -0.6690 29 1 2.7930 -0.8370 -1.9793 30 1 4.2465 -1.0601 -0.9767 31 1 4.2462 -0.3127 1.4079 32 1 2.7933 -1.2945 1.7151 33 1 3.0087 0.5237 3.3871 34 1 3.0084 1.7287 2.0768 35 1 1.5556 0.7474 2.3841 36 1 2.7591 2.0487 0.1769 37 1 4.9801 1.1464 0.5747 38 1 4.9811 0.6139 -1.1237 39 1 7.7430 4.2739 -1.9537 40 1 6.0638 4.8601 -1.8871 41 1 8.0841 7.8774 -1.2746 42 1 7.0060 1.6508 1.1685 43 1 8.6234 -0.1965 1.3377 44 1 9.8414 -0.9559 -0.6615 45 1 9.4388 0.1224 -2.8369 46 1 7.8155 1.9634 -3.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852097910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:21 Heat of formation + Delta-G solvation = 54.647713 kcal Electronic energy + Delta-G solvation = -26549.268942 eV Core-core repulsion = 23019.749065 eV Total energy + Delta-G solvation = -3529.519877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -40.08895 -38.82691 -37.81673 -34.84956 -32.96703 -32.58334 -31.62371 -30.73609 -29.92459 -29.38450 -27.80337 -26.04044 -23.85634 -22.95939 -22.49686 -22.13121 -21.09981 -19.02402 -18.12224 -16.98447 -16.54433 -16.16460 -15.84670 -15.57821 -15.15325 -14.89507 -14.73805 -14.38663 -14.12045 -14.02215 -13.57824 -13.18624 -13.11269 -12.94401 -12.50524 -12.35319 -12.20756 -12.06206 -11.85509 -11.53318 -11.46032 -11.31566 -11.17569 -11.07729 -10.98237 -10.87247 -10.63750 -10.47983 -10.27222 -10.19812 -9.76912 -9.33794 -8.72969 -8.60108 -8.45245 -8.33205 -7.67675 -6.07591 -4.12613 1.54536 1.61847 2.68308 2.81771 3.27420 3.30218 3.34372 3.37671 3.68435 4.00210 4.15560 4.40403 4.44948 4.65048 4.85238 5.01812 5.04813 5.14847 5.15410 5.27428 5.33046 5.38119 5.40493 5.44552 5.50707 5.57656 5.66021 5.74856 5.78522 5.79450 5.81311 6.01695 6.06986 6.10626 6.11923 6.23473 6.57200 6.70431 6.78860 6.84473 7.02759 7.18056 7.35046 7.40334 7.47101 7.59150 7.87644 8.16579 8.33854 8.82811 8.97961 9.51928 11.00657 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.004673 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.744891 B = 5990.260093 C = 7379.038446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.223 3.777 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.158 4.158 7 N -0.659 5.659 8 C 0.036 3.964 9 C 0.515 3.485 10 O -0.516 6.516 11 N -0.563 5.563 12 C 0.248 3.752 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.893 5.893 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.165 3.835 22 C -0.127 4.127 23 C -0.110 4.110 24 C -0.135 4.135 25 C -0.109 4.109 26 C -0.124 4.124 27 H 0.217 0.783 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.356 0.644 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.049 0.951 41 H 0.265 0.735 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 -19.258 3.042 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.161 4.161 3 C 0.132 3.868 4 C -0.197 4.197 5 C -0.191 4.191 6 C -0.216 4.216 7 N -0.293 5.293 8 C -0.096 4.096 9 C 0.302 3.698 10 O -0.390 6.390 11 N -0.292 5.292 12 C 0.131 3.869 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C 0.073 3.927 22 C -0.146 4.146 23 C -0.129 4.129 24 C -0.153 4.153 25 C -0.127 4.127 26 C -0.144 4.144 27 H 0.233 0.767 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.178 0.822 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.756 -18.640 2.162 19.359 hybrid contribution 0.429 0.731 1.863 2.046 sum -4.327 -17.909 4.025 18.859 Atomic orbital electron populations 1.24830 0.95752 0.99873 1.01495 1.22544 0.93512 1.00535 0.99464 1.17870 0.84400 0.90830 0.93680 1.21890 1.01433 0.96810 0.99522 1.22270 1.01619 1.00264 0.94969 1.21829 1.01651 0.99000 0.99093 1.60363 1.06499 1.03559 1.58837 1.22025 0.88994 0.96947 1.01643 1.20205 0.82134 0.89394 0.78043 1.90688 1.52293 1.46599 1.49467 1.45950 1.04363 1.09675 1.69203 1.19423 0.95748 0.74748 0.97015 1.21318 1.44825 0.97907 0.92618 0.92536 1.24903 0.95350 0.97109 0.96505 1.69918 1.45955 1.12964 1.24314 0.86558 0.78701 0.78751 0.83443 1.20214 1.21078 1.20163 1.17754 0.92793 0.89442 0.92743 1.21357 0.99348 0.97307 0.96638 1.20956 0.96529 0.96973 0.98424 1.21051 1.00490 1.00792 0.93001 1.20973 0.97837 0.96206 0.97708 1.21326 0.97674 0.97115 0.98276 0.76666 0.91916 0.91201 0.91444 0.90559 0.91044 0.92248 0.92425 0.92258 0.82239 0.91852 0.88238 0.94732 0.93264 0.92572 0.86087 0.86212 0.86415 0.86093 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.16 -2.01 10.75 -37.12 -0.40 -2.41 16 3 C 0.22 2.70 0.65 -134.39 -0.09 2.61 16 4 C -0.14 -1.48 8.19 37.16 0.30 -1.17 16 5 C -0.15 -1.59 4.59 -26.73 -0.12 -1.71 16 6 C -0.16 -1.73 9.32 37.16 0.35 -1.39 16 7 N -0.66 -9.96 5.61 -104.09 -0.58 -10.55 16 8 C 0.04 0.55 3.90 -4.98 -0.02 0.53 16 9 C 0.52 10.73 7.62 -10.99 -0.08 10.65 16 10 O -0.52 -12.87 15.71 5.55 0.09 -12.79 16 11 N -0.56 -12.02 2.51 -114.74 -0.29 -12.31 16 12 C 0.25 6.51 5.15 -5.19 -0.03 6.48 16 13 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 17 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 C 0.16 2.92 4.43 -83.69 -0.37 2.55 16 22 C -0.13 -1.95 8.45 -39.39 -0.33 -2.28 16 23 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 24 C -0.14 -1.59 10.04 -39.55 -0.40 -1.99 16 25 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 26 C -0.12 -1.96 9.67 -39.39 -0.38 -2.34 16 27 H 0.22 1.58 7.80 -54.10 -0.42 1.16 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.67 6.40 -51.93 -0.33 0.34 16 31 H 0.08 0.77 6.40 -51.93 -0.33 0.44 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.72 6.76 -51.93 -0.35 0.37 16 35 H 0.06 0.65 7.23 -51.93 -0.38 0.27 16 36 H 0.36 5.81 6.65 -39.29 -0.26 5.55 16 37 H 0.06 0.88 5.06 -51.93 -0.26 0.62 16 38 H 0.10 1.40 6.03 -51.93 -0.31 1.09 16 39 H 0.03 0.93 7.85 -51.93 -0.41 0.52 16 40 H 0.05 1.44 7.36 -51.93 -0.38 1.06 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.12 1.85 7.56 -52.49 -0.40 1.46 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -32.77 380.95 -8.31 -41.08 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.76 Total: 6.92 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.22 Total: -9.17 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.14 Total: -48.61 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.77 -8.31 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852097910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.732 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds