Wall clock time and date at job start Tue Mar 31 2020 10:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47161 * 42.59936 * 3 2 1 5 5 C 1.52993 * 109.47174 * 282.59607 * 3 2 1 6 6 C 1.53002 * 109.47344 * 300.00216 * 5 3 2 7 7 N 1.46899 * 109.46612 * 162.59526 * 3 2 1 8 8 C 1.46902 * 110.99862 * 179.97438 * 7 3 2 9 9 C 1.50692 * 109.47382 * 180.02562 * 8 7 3 10 10 O 1.21286 * 120.00107 * 5.14364 * 9 8 7 11 11 N 1.34777 * 120.00371 * 185.14372 * 9 8 7 12 12 C 1.46503 * 120.00253 * 185.19183 * 11 9 8 13 13 C 1.50696 * 109.46696 * 90.00321 * 12 11 9 14 14 H 1.07998 * 120.00473 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99442 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00341 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99748 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47283 * 59.99407 * 17 15 13 19 19 H 1.48499 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46683 * 299.99176 * 17 15 13 21 21 C 1.39925 * 119.99573 * 5.19465 * 11 9 8 22 22 C 1.38877 * 120.07134 * 292.33910 * 21 11 9 23 23 C 1.38114 * 119.92798 * 179.75010 * 22 21 11 24 24 C 1.38280 * 120.07153 * 0.53077 * 23 22 21 25 25 C 1.38281 * 120.13921 * 359.74545 * 24 23 22 26 26 C 1.38114 * 120.07493 * 359.97438 * 25 24 23 27 27 H 4.44654 * 5.63274 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47027 * 299.99846 * 4 3 2 29 29 H 1.09001 * 109.47167 * 59.99858 * 4 3 2 30 30 H 1.08998 * 109.46997 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47458 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47416 * 60.00433 * 5 3 2 33 33 H 1.09001 * 109.47167 * 179.97438 * 6 5 3 34 34 H 1.08991 * 109.47307 * 300.00098 * 6 5 3 35 35 H 1.09006 * 109.46990 * 60.00336 * 6 5 3 36 36 H 1.00901 * 110.99940 * 56.04954 * 7 3 2 37 37 H 1.09000 * 109.47041 * 300.00888 * 8 7 3 38 38 H 1.09004 * 109.47108 * 60.00259 * 8 7 3 39 39 H 1.08998 * 109.47029 * 209.99990 * 12 11 9 40 40 H 1.08994 * 109.47032 * 330.00122 * 12 11 9 41 41 H 0.97001 * 119.99956 * 180.02562 * 16 15 13 42 42 H 1.08001 * 120.03292 * 0.02701 * 22 21 11 43 43 H 1.07996 * 119.96238 * 180.27761 * 23 22 21 44 44 H 1.08003 * 119.93115 * 179.72202 * 24 23 22 45 45 H 1.08008 * 119.96079 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.03804 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0610 -0.9764 5 6 3.1561 -0.3137 1.4077 6 6 2.6456 0.7479 2.3841 7 7 3.1350 1.3225 -0.4143 8 6 4.6034 1.3608 -0.4255 9 6 5.0670 2.7292 -0.8537 10 8 4.2581 3.6150 -1.0329 11 7 6.3805 2.9689 -1.0376 12 6 6.8420 4.3254 -1.3426 13 6 7.1469 5.0528 -0.0585 14 1 7.0102 4.5546 0.8899 15 6 7.5994 6.3547 -0.0944 16 7 7.7654 6.9616 -1.2493 17 14 7.9780 7.2561 1.4973 18 1 9.0389 6.5278 2.2383 19 1 8.4457 8.6313 1.1882 20 1 6.7508 7.3258 2.3306 21 6 7.3034 1.9219 -0.9374 22 6 7.5369 1.3153 0.2899 23 6 8.4447 0.2786 0.3845 24 6 9.1287 -0.1481 -0.7390 25 6 8.9026 0.4577 -1.9613 26 6 7.9919 1.4910 -2.0638 27 1 -1.0499 0.0000 -0.0003 28 1 2.7936 -2.0417 -0.6690 29 1 2.7930 -0.8370 -1.9793 30 1 4.2465 -1.0601 -0.9767 31 1 4.2462 -0.3127 1.4079 32 1 2.7933 -1.2945 1.7151 33 1 3.0087 0.5237 3.3871 34 1 3.0084 1.7287 2.0768 35 1 1.5556 0.7474 2.3841 36 1 2.7591 2.0487 0.1769 37 1 4.9801 1.1464 0.5747 38 1 4.9811 0.6139 -1.1237 39 1 7.7430 4.2739 -1.9537 40 1 6.0638 4.8601 -1.8871 41 1 8.0841 7.8774 -1.2746 42 1 7.0060 1.6508 1.1685 43 1 8.6234 -0.1965 1.3377 44 1 9.8414 -0.9559 -0.6615 45 1 9.4388 0.1224 -2.8369 46 1 7.8155 1.9634 -3.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852097910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:20 Heat of formation + Delta-G solvation = 34.841467 kcal Electronic energy + Delta-G solvation = -26550.127805 eV Core-core repulsion = 23019.749065 eV Total energy + Delta-G solvation = -3530.378740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52132 -39.88701 -39.14520 -36.50711 -34.82447 -33.88682 -32.54185 -31.83027 -31.01443 -30.69563 -29.41736 -27.55901 -25.05868 -24.49340 -23.71340 -23.30921 -22.19320 -20.41983 -19.25366 -18.71538 -18.06832 -17.48244 -17.10227 -17.08242 -16.46947 -16.15262 -16.05833 -15.65147 -15.27188 -15.17955 -14.87019 -14.43074 -14.35501 -14.25427 -14.06559 -13.58376 -13.45068 -13.37925 -13.09105 -13.06617 -12.75134 -12.64926 -12.46778 -12.36959 -12.19171 -12.12443 -12.09818 -11.89952 -11.74907 -11.42067 -11.17882 -10.93512 -10.68116 -10.06143 -9.81364 -9.50799 -9.19621 -8.25744 -6.41269 0.39487 0.53255 1.33759 1.38149 1.45380 1.67435 1.70967 1.93708 2.19186 2.38059 2.89385 3.04039 3.24664 3.39116 3.59048 3.79699 4.02609 4.06914 4.15080 4.17669 4.27123 4.31486 4.35667 4.51508 4.63155 4.65274 4.67892 4.71795 4.78514 4.89002 4.93955 4.98992 4.99926 5.11313 5.18448 5.22481 5.24646 5.27819 5.42508 5.56587 5.65746 5.67867 5.76928 5.88057 5.99056 6.10247 6.17339 6.64389 6.72038 6.73432 7.21719 7.36501 8.81489 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.004673 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.744891 B = 5990.260093 C = 7379.038446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.201 4.201 3 C 0.220 3.780 4 C -0.137 4.137 5 C -0.146 4.146 6 C -0.156 4.156 7 N -0.676 5.676 8 C 0.061 3.939 9 C 0.504 3.496 10 O -0.573 6.573 11 N -0.564 5.564 12 C 0.266 3.734 13 C -0.543 4.543 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.275 1.275 21 C 0.124 3.876 22 C -0.135 4.135 23 C -0.100 4.100 24 C -0.119 4.119 25 C -0.103 4.103 26 C -0.142 4.142 27 H 0.247 0.753 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.055 0.945 36 H 0.345 0.655 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.019 0.981 40 H 0.002 0.998 41 H 0.268 0.732 42 H 0.116 0.884 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.150 0.850 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -22.532 5.119 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.202 4.202 3 C 0.130 3.870 4 C -0.194 4.194 5 C -0.185 4.185 6 C -0.214 4.214 7 N -0.309 5.309 8 C -0.071 4.071 9 C 0.294 3.706 10 O -0.451 6.451 11 N -0.292 5.292 12 C 0.146 3.854 13 C -0.581 4.581 14 H 0.072 0.928 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.201 1.201 21 C 0.034 3.966 22 C -0.154 4.154 23 C -0.119 4.119 24 C -0.137 4.137 25 C -0.121 4.121 26 C -0.162 4.162 27 H 0.263 0.737 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.037 0.963 40 H 0.021 0.979 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.173 0.827 44 H 0.177 0.823 45 H 0.168 0.832 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.368 -21.984 4.239 22.641 hybrid contribution 0.006 1.664 1.149 2.022 sum -3.362 -20.320 5.389 21.290 Atomic orbital electron populations 1.25665 0.96656 0.98162 1.00066 1.22911 0.94247 1.02097 1.00897 1.18010 0.84595 0.89295 0.95050 1.21897 1.01819 0.97308 0.98389 1.22235 1.01865 1.00824 0.93577 1.21807 1.01472 0.98090 1.00021 1.60371 1.06061 1.05088 1.59390 1.21818 0.89443 0.93198 1.02600 1.21245 0.81449 0.91085 0.76811 1.90642 1.53652 1.48806 1.52032 1.45757 1.05569 1.08961 1.68866 1.18809 0.93310 0.77484 0.95809 1.21575 1.44955 0.98621 0.92950 0.92765 1.25856 0.94945 0.97927 1.00205 1.70049 1.46574 1.13394 1.26659 0.85462 0.78754 0.77684 0.78916 1.18507 1.20174 1.20055 1.18030 0.94026 0.89864 0.94727 1.21392 1.00430 0.98348 0.95269 1.21348 0.94714 0.95431 1.00375 1.21553 0.99737 1.00579 0.91789 1.21318 0.96500 0.94658 0.99654 1.21377 0.98924 0.98664 0.97243 0.73699 0.89808 0.92636 0.90743 0.89953 0.89146 0.90829 0.94695 0.92560 0.83512 0.89976 0.86622 0.96313 0.97949 0.92299 0.86621 0.82694 0.82274 0.83189 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.87 19.25 74.32 1.43 -2.44 16 2 C -0.20 -4.89 10.75 31.13 0.33 -4.56 16 3 C 0.22 5.17 0.65 1.72 0.00 5.18 16 4 C -0.14 -2.71 8.19 71.98 0.59 -2.12 16 5 C -0.15 -2.79 4.59 30.59 0.14 -2.65 16 6 C -0.16 -3.31 9.32 71.98 0.67 -2.64 16 7 N -0.68 -21.07 5.61 -483.22 -2.71 -23.78 16 8 C 0.06 1.91 3.90 85.55 0.33 2.25 16 9 C 0.50 22.41 7.62 87.65 0.67 23.08 16 10 O -0.57 -31.00 15.71 -3.05 -0.05 -31.05 16 11 N -0.56 -25.63 2.51 -635.32 -1.59 -27.22 16 12 C 0.27 15.02 5.15 85.63 0.44 15.46 16 13 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 14 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 15 C 0.01 0.58 5.46 84.66 0.46 1.04 16 16 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 17 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 C 0.12 4.48 4.43 38.15 0.17 4.65 16 22 C -0.13 -3.97 8.45 22.39 0.19 -3.78 16 23 C -0.10 -2.11 10.04 22.25 0.22 -1.89 16 24 C -0.12 -2.22 10.04 22.29 0.22 -2.00 16 25 C -0.10 -2.34 10.04 22.25 0.22 -2.11 16 26 C -0.14 -4.51 9.67 22.39 0.22 -4.30 16 27 H 0.25 3.04 7.80 -4.42 -0.03 3.01 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.33 6.40 -2.39 -0.02 1.32 16 31 H 0.08 1.46 6.40 -2.38 -0.02 1.45 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.03 0.89 6.76 -2.39 -0.02 0.87 16 35 H 0.06 1.20 7.23 -2.38 -0.02 1.18 16 36 H 0.34 11.94 6.65 -89.69 -0.60 11.35 16 37 H 0.08 2.27 5.06 -2.39 -0.01 2.25 16 38 H 0.12 3.25 6.03 -2.39 -0.01 3.23 16 39 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 40 H 0.00 0.16 7.36 -2.39 -0.02 0.14 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.12 3.46 7.56 -2.91 -0.02 3.44 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 46 H 0.11 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -77.25 380.95 4.89 -72.36 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.38 Total: 27.69 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 6.56 Total: -8.60 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.02 Total: -107.85 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -77.25 4.89 -72.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852097910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.199 kcal (2) G-P(sol) polarization free energy of solvation -77.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds