Wall clock time and date at job start Tue Mar 31 2020 10:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46987 * 2 1 4 4 C 1.53002 * 109.46873 * 299.99480 * 3 2 1 5 5 C 1.52995 * 109.47071 * 59.99748 * 3 2 1 6 6 C 1.50695 * 109.46792 * 179.97438 * 3 2 1 7 7 N 1.29949 * 126.29151 * 359.68824 * 6 3 2 8 8 O 1.21295 * 110.25124 * 179.84314 * 7 6 3 9 9 C 1.33643 * 109.81525 * 0.42157 * 8 7 6 10 10 C 1.50693 * 126.55611 * 179.75665 * 9 8 7 11 11 C 1.53004 * 109.47365 * 269.98038 * 10 9 8 12 12 H 1.09002 * 109.47065 * 304.99327 * 11 10 9 13 13 C 1.50694 * 109.47126 * 65.00062 * 11 10 9 14 14 H 1.07999 * 120.00305 * 31.95980 * 13 11 10 15 15 C 1.37878 * 119.99872 * 211.96712 * 13 11 10 16 16 N 1.31516 * 120.00087 * 5.57833 * 15 13 11 17 17 Si 1.86798 * 120.00029 * 185.59059 * 15 13 11 18 18 H 1.48494 * 109.47548 * 89.99484 * 17 15 13 19 19 H 1.48506 * 109.46974 * 209.99581 * 17 15 13 20 20 H 1.48498 * 109.47146 * 329.99137 * 17 15 13 21 21 C 1.50702 * 109.46921 * 184.99715 * 11 10 9 22 22 C 1.38233 * 120.00195 * 296.09689 * 21 11 10 23 23 C 1.38233 * 119.99818 * 179.79097 * 22 21 11 24 24 C 1.38239 * 119.99909 * 0.44097 * 23 22 21 25 25 C 1.38230 * 120.00355 * 359.81406 * 24 23 22 26 26 C 1.38230 * 119.99623 * 359.97433 * 25 24 23 27 27 N 1.31135 * 106.89596 * 359.74197 * 9 8 7 28 28 H 1.08998 * 109.46690 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47219 * 299.99934 * 1 2 3 30 30 H 1.08997 * 109.47107 * 60.00588 * 1 2 3 31 31 H 1.08996 * 109.47044 * 239.99571 * 2 1 3 32 32 H 1.09001 * 109.46904 * 119.99856 * 2 1 3 33 33 H 1.08999 * 109.47043 * 179.97438 * 4 3 2 34 34 H 1.09008 * 109.46542 * 60.00568 * 4 3 2 35 35 H 1.08996 * 109.47360 * 300.00552 * 4 3 2 36 36 H 1.08995 * 109.47435 * 299.99676 * 5 3 2 37 37 H 1.08997 * 109.47429 * 60.00339 * 5 3 2 38 38 H 1.09010 * 109.47085 * 179.97438 * 5 3 2 39 39 H 1.09004 * 109.46975 * 29.97889 * 10 9 8 40 40 H 1.09002 * 109.47468 * 149.97437 * 10 9 8 41 41 H 0.96999 * 120.00355 * 180.02562 * 16 15 13 42 42 H 1.07992 * 120.00155 * 359.97438 * 22 21 11 43 43 H 1.08002 * 120.00023 * 180.27618 * 23 22 21 44 44 H 1.08005 * 119.99420 * 179.83442 * 24 23 22 45 45 H 1.07997 * 120.00340 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.00178 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1637 1.2492 6 6 3.5470 1.4425 0.0006 7 7 4.3161 0.3950 0.0068 8 8 5.4818 0.7301 0.0023 9 6 5.5699 2.0637 0.0018 10 6 6.8369 2.8795 0.0020 11 6 7.2649 3.1566 1.4446 12 1 6.4434 3.6296 1.9827 13 6 7.6264 1.8587 2.1194 14 1 8.0569 1.0524 1.5441 15 6 7.4075 1.7004 3.4715 16 7 6.7838 2.6379 4.1509 17 14 7.9972 0.1544 4.3384 18 1 9.3794 0.3641 4.8391 19 1 7.0972 -0.1464 5.4807 20 1 7.9836 -0.9837 3.3846 21 6 8.4607 4.0738 1.4463 22 6 9.6547 3.6539 0.8905 23 6 10.7502 4.4969 0.8883 24 6 10.6544 5.7564 1.4501 25 6 9.4619 6.1743 2.0106 26 6 8.3651 5.3330 2.0089 27 7 4.3430 2.5266 0.0008 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8930 3.1915 -1.2491 34 1 0.4400 2.1636 -1.2493 35 1 1.8934 1.6498 -2.1393 36 1 0.4400 2.1638 1.2491 37 1 1.8933 1.6500 2.1392 38 1 1.8937 3.1914 1.2494 39 1 7.6245 2.3275 -0.5110 40 1 6.6610 3.8241 -0.5127 41 1 6.6301 2.5267 5.1021 42 1 9.7307 2.6685 0.4554 43 1 11.6818 4.1705 0.4501 44 1 11.5112 6.4139 1.4507 45 1 9.3869 7.1584 2.4491 46 1 7.4333 5.6596 2.4464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867171365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:41 Heat of formation + Delta-G solvation = 48.779789 kcal Electronic energy + Delta-G solvation = -26354.270283 eV Core-core repulsion = 22824.495954 eV Total energy + Delta-G solvation = -3529.774329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -46.36339 -39.99552 -39.13955 -36.84119 -35.79955 -34.00532 -32.68936 -31.49951 -31.06971 -30.03291 -28.32257 -27.59705 -26.28562 -24.78347 -23.96436 -23.28867 -22.85191 -21.40855 -19.94431 -18.85446 -18.54070 -18.14575 -17.39283 -16.65820 -16.48573 -15.87790 -15.69006 -15.53975 -15.40627 -15.04726 -14.54126 -14.32234 -14.24814 -13.94355 -13.82215 -13.41698 -13.26948 -13.16448 -13.03748 -12.91478 -12.88376 -12.66985 -12.58710 -12.48842 -12.19521 -12.11013 -12.05171 -11.86091 -11.85325 -11.53948 -11.49249 -11.40565 -11.06893 -10.69278 -10.56017 -9.53861 -9.23643 -8.18486 -6.25822 0.34305 0.78339 0.82800 1.33926 1.36293 1.40848 1.44104 2.11241 2.36976 2.72271 3.09172 3.15866 3.27501 3.77875 3.84322 3.94952 4.21616 4.28078 4.36784 4.38073 4.41409 4.47130 4.53950 4.57877 4.63325 4.67826 4.70480 4.74129 4.86010 4.88036 4.94960 4.97894 5.01649 5.05957 5.09315 5.13103 5.20465 5.23138 5.35963 5.36751 5.47620 5.50585 5.57898 5.69725 5.84548 5.91734 6.06327 6.32167 6.44692 6.87688 7.34519 7.40710 8.88792 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.004158 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.175926 B = 6732.810370 C = 7741.586096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C 0.026 3.974 4 C -0.130 4.130 5 C -0.134 4.134 6 C 0.173 3.827 7 N -0.417 5.417 8 O 0.059 5.941 9 C 0.227 3.773 10 C -0.014 4.014 11 C 0.077 3.923 12 H 0.032 0.968 13 C -0.510 4.510 14 H 0.062 0.938 15 C 0.024 3.976 16 N -0.914 5.914 17 Si 0.933 3.067 18 H -0.271 1.271 19 H -0.293 1.293 20 H -0.267 1.267 21 C -0.047 4.047 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.145 4.145 25 C -0.129 4.129 26 C -0.141 4.141 27 N -0.512 5.512 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.033 0.967 38 H 0.052 0.948 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.258 0.742 42 H 0.122 0.878 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.132 0.868 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.093 1.946 -9.887 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C 0.024 3.976 4 C -0.187 4.187 5 C -0.192 4.192 6 C -0.101 4.101 7 N -0.130 5.130 8 O 0.007 5.993 9 C 0.008 3.992 10 C -0.053 4.053 11 C 0.057 3.943 12 H 0.051 0.949 13 C -0.548 4.548 14 H 0.081 0.919 15 C -0.176 4.176 16 N -0.553 5.553 17 Si 0.759 3.241 18 H -0.197 1.197 19 H -0.219 1.219 20 H -0.192 1.192 21 C -0.048 4.048 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.163 4.163 25 C -0.147 4.147 26 C -0.159 4.159 27 N -0.246 5.246 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.140 0.860 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.149 0.851 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.741 1.466 -9.710 11.375 hybrid contribution 0.622 -0.873 1.342 1.717 sum -5.119 0.593 -8.368 9.827 Atomic orbital electron populations 1.21870 0.92295 1.02888 1.03308 1.21468 0.98359 0.92988 1.01655 1.19211 0.80751 0.98551 0.99065 1.21849 1.02947 0.99798 0.94134 1.21869 1.02958 0.99720 0.94631 1.26390 1.01021 0.83436 0.99234 1.74481 0.89688 1.25037 1.23764 1.85223 1.22209 1.25696 1.66220 1.29021 0.97252 0.81607 0.91298 1.20558 0.87255 0.96802 1.00720 1.17807 0.92570 0.94133 0.89791 0.94924 1.21266 1.41164 0.98909 0.93462 0.91937 1.25568 0.94769 0.98450 0.98812 1.70037 1.41630 1.35366 1.08236 0.85922 0.78464 0.81228 0.78439 1.19686 1.21912 1.19167 1.20341 0.96743 0.92957 0.94734 1.21105 0.92679 0.99706 1.00720 1.21390 0.98648 0.94336 1.00099 1.21293 0.97880 0.97039 1.00038 1.21282 0.93284 0.99881 1.00292 1.21117 0.98945 0.94787 1.01073 1.71797 1.00006 1.29824 1.22956 0.91599 0.91521 0.90512 0.92142 0.93676 0.92474 0.88053 0.92808 0.87756 0.94783 0.92869 0.87384 0.87654 0.93274 0.86016 0.84087 0.83943 0.85055 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.21 71.98 0.66 -1.88 16 2 C -0.11 -2.74 4.49 30.60 0.14 -2.61 16 3 C 0.03 0.76 0.77 -52.93 -0.04 0.72 16 4 C -0.13 -2.98 8.10 71.98 0.58 -2.40 16 5 C -0.13 -3.76 8.10 71.98 0.58 -3.18 16 6 C 0.17 6.70 6.40 138.46 0.89 7.59 16 7 N -0.42 -17.65 11.47 -60.32 -0.69 -18.34 16 8 O 0.06 2.58 11.31 74.84 0.85 3.43 16 9 C 0.23 9.57 7.20 88.38 0.64 10.21 16 10 C -0.01 -0.55 5.09 29.85 0.15 -0.40 16 11 C 0.08 3.55 2.06 -12.29 -0.03 3.52 16 12 H 0.03 1.77 7.06 -2.39 -0.02 1.76 16 13 C -0.51 -26.15 7.21 25.60 0.18 -25.96 16 14 H 0.06 3.14 7.82 -2.91 -0.02 3.11 16 15 C 0.02 1.31 5.45 84.65 0.46 1.77 16 16 N -0.91 -53.09 12.81 21.45 0.27 -52.82 16 17 Si 0.93 44.21 29.54 68.60 2.03 46.24 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 C -0.05 -1.97 4.77 -19.86 -0.09 -2.07 16 22 C -0.12 -4.53 8.86 22.27 0.20 -4.33 16 23 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 24 C -0.14 -4.25 10.05 22.27 0.22 -4.03 16 25 C -0.13 -4.30 10.05 22.27 0.22 -4.08 16 26 C -0.14 -5.71 9.67 22.27 0.22 -5.50 16 27 N -0.51 -21.37 11.55 -303.20 -3.50 -24.88 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 30 H 0.08 1.07 6.43 -2.39 -0.02 1.05 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.64 6.43 -2.38 -0.02 1.62 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 2.09 6.43 -2.39 -0.02 2.08 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.11 3.62 7.81 -2.38 -0.02 3.60 16 40 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 41 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.12 4.21 7.77 -2.91 -0.02 4.19 16 43 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 44 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 45 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 46 H 0.10 4.13 7.95 -2.91 -0.02 4.11 16 Total: -1.00 -65.29 377.29 5.12 -60.17 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.96 Total: 22.46 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 5.21 Total: -36.27 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -3.92 Total: -96.03 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.85 Total: 3.43 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.29 5.12 -60.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867171365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.949 kcal (2) G-P(sol) polarization free energy of solvation -65.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds