Wall clock time and date at job start Tue Mar 31 2020 10:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47119 * 120.00422 * 2 1 4 4 C 1.32867 * 120.00109 * 175.26229 * 3 2 1 5 5 C 1.50703 * 120.00104 * 6.15570 * 4 3 2 6 6 C 1.52993 * 109.47289 * 126.02998 * 5 4 3 7 7 N 1.46497 * 109.47429 * 180.02562 * 6 5 4 8 8 C 1.34771 * 120.00270 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00055 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00236 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00201 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47460 * 324.99769 * 11 10 8 13 13 C 1.52999 * 109.47109 * 205.00037 * 11 10 8 14 14 C 1.50707 * 109.47163 * 64.99988 * 13 11 10 15 15 H 1.07998 * 119.99729 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99719 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00478 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99393 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47303 * 60.00336 * 18 16 14 20 20 H 1.48500 * 109.46892 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47107 * 299.99899 * 18 16 14 22 22 C 1.50705 * 109.47162 * 85.00371 * 11 10 8 23 23 C 1.38233 * 119.99855 * 39.72273 * 22 11 10 24 24 C 1.38245 * 119.99567 * 179.78934 * 23 22 11 25 25 C 1.38234 * 120.00034 * 0.44581 * 24 23 22 26 26 C 1.38238 * 119.99835 * 359.80740 * 25 24 23 27 27 C 1.38231 * 120.00101 * 359.97438 * 26 25 24 28 28 H 1.07997 * 120.00135 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99715 * 359.72326 * 1 2 3 30 30 H 1.08002 * 119.99620 * 179.97438 * 2 1 3 31 31 H 1.08003 * 119.99470 * 355.26232 * 3 2 1 32 32 H 1.08002 * 119.99630 * 186.15698 * 4 3 2 33 33 H 1.09000 * 109.46812 * 246.02932 * 5 4 3 34 34 H 1.08992 * 109.47068 * 6.02387 * 5 4 3 35 35 H 1.09004 * 109.46715 * 299.99967 * 6 5 4 36 36 H 1.09002 * 109.47611 * 59.99535 * 6 5 4 37 37 H 0.97000 * 119.99666 * 359.97438 * 7 6 5 38 38 H 0.97000 * 119.99699 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47183 * 185.00279 * 13 11 10 40 40 H 1.09005 * 109.47239 * 305.00007 * 13 11 10 41 41 H 0.96991 * 120.00046 * 179.97438 * 17 16 14 42 42 H 1.08001 * 120.00233 * 0.02562 * 23 22 11 43 43 H 1.07993 * 119.99596 * 180.27361 * 24 23 22 44 44 H 1.07996 * 119.99871 * 179.83256 * 25 24 23 45 45 H 1.08000 * 120.00096 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.00345 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3897 1.2759 0.0950 5 6 4.1493 -0.0253 0.0631 6 6 5.2198 0.0358 -1.0283 7 7 5.9578 -1.2293 -1.0598 8 6 6.9553 -1.4056 -1.9488 9 8 7.2423 -0.5148 -2.7251 10 7 7.6346 -2.5693 -1.9775 11 6 8.7192 -2.7607 -2.9435 12 1 8.4725 -2.2480 -3.8731 13 6 8.9000 -4.2550 -3.2177 14 6 7.6653 -4.7950 -3.8924 15 1 6.8346 -4.1381 -4.1040 16 6 7.5963 -6.1276 -4.2395 17 7 8.6077 -6.9276 -3.9814 18 14 6.0655 -6.7969 -5.0751 19 1 5.8482 -6.0804 -6.3576 20 1 6.2411 -8.2472 -5.3414 21 1 4.8902 -6.5953 -4.1901 22 6 9.9980 -2.1948 -2.3817 23 6 10.2991 -2.3634 -1.0431 24 6 11.4742 -1.8481 -0.5287 25 6 12.3438 -1.1562 -1.3510 26 6 12.0402 -0.9832 -2.6884 27 6 10.8673 -1.5024 -3.2037 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0045 30 1 1.8687 -0.9354 0.0004 31 1 1.5271 2.2078 -0.0773 32 1 3.9225 2.2100 0.1952 33 1 4.6248 -0.1921 1.0295 34 1 3.4605 -0.8429 -0.1489 35 1 4.7442 0.2027 -1.9948 36 1 5.9086 0.8536 -0.8163 37 1 5.7286 -1.9400 -0.4408 38 1 7.4058 -3.2797 -1.3579 39 1 9.7631 -4.4035 -3.8667 40 1 9.0588 -4.7807 -2.2761 41 1 8.5590 -7.8651 -4.2253 42 1 9.6180 -2.9010 -0.4000 43 1 11.7115 -1.9836 0.5160 44 1 13.2605 -0.7513 -0.9485 45 1 12.7197 -0.4430 -3.3310 46 1 10.6302 -1.3675 -4.2488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883527856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:11 Heat of formation + Delta-G solvation = 18.086087 kcal Electronic energy + Delta-G solvation = -25062.300885 eV Core-core repulsion = 21531.195577 eV Total energy + Delta-G solvation = -3531.105308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.75907 -38.60167 -37.03494 -35.33600 -34.38365 -32.73497 -32.10231 -30.85883 -30.39678 -28.91473 -28.15286 -24.90398 -23.19882 -22.24077 -22.01773 -21.90653 -20.71232 -19.76327 -18.73019 -17.67176 -16.83832 -16.21757 -16.11509 -15.85994 -15.02442 -14.98464 -14.70473 -14.56716 -14.43436 -13.88637 -13.61677 -13.37775 -12.98224 -12.74083 -12.64643 -12.48351 -12.34306 -12.12802 -12.07368 -11.63076 -11.48661 -11.10878 -10.98838 -10.88673 -10.78267 -10.69520 -10.60446 -10.41751 -9.74575 -9.64939 -9.28249 -8.86321 -8.57642 -8.49644 -8.43612 -8.25063 -8.12646 -6.07425 -4.10544 1.11150 1.82783 1.85067 2.81709 3.21937 3.29244 3.34379 3.37559 3.75917 4.25206 4.41018 4.49031 4.72852 4.81045 4.91202 4.98874 5.10961 5.29190 5.30519 5.31898 5.38782 5.42018 5.44477 5.54329 5.59412 5.83011 5.95552 5.97038 5.99094 6.13965 6.20542 6.26866 6.40561 6.41758 6.47357 6.62776 6.66156 6.76622 6.88858 6.89949 7.00997 7.15679 7.36627 7.45483 7.54289 7.71476 7.89812 8.28340 8.56987 8.95363 9.15267 9.54206 11.03141 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007812 B = 0.003894 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.588505 B = 7188.022104 C =10239.517516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.133 4.133 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.113 4.113 6 C 0.147 3.853 7 N -0.754 5.754 8 C 0.703 3.297 9 O -0.598 6.598 10 N -0.717 5.717 11 C 0.202 3.798 12 H 0.086 0.914 13 C 0.024 3.976 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.070 4.070 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.394 0.606 38 H 0.396 0.604 39 H 0.035 0.965 40 H 0.024 0.976 41 H 0.262 0.738 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 12.926 11.026 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.151 4.151 3 C -0.157 4.157 4 C -0.151 4.151 5 C -0.150 4.150 6 C 0.023 3.977 7 N -0.411 5.411 8 C 0.403 3.597 9 O -0.477 6.477 10 N -0.369 5.369 11 C 0.097 3.903 12 H 0.104 0.896 13 C -0.013 4.013 14 C -0.557 4.557 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.072 4.072 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.126 4.126 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.227 0.773 38 H 0.230 0.770 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.629 13.552 10.258 17.905 hybrid contribution -1.031 -1.131 0.132 1.536 sum -6.660 12.421 10.390 17.509 Atomic orbital electron populations 1.24368 0.95696 1.01894 1.00012 1.22167 0.95453 0.97230 1.00228 1.21895 0.94778 0.96816 1.02189 1.23231 0.94845 0.98379 0.98626 1.21043 0.97751 0.96780 0.99462 1.20970 0.92502 0.85766 0.98489 1.45076 1.37713 1.18271 1.40032 1.15990 0.79318 0.83375 0.81031 1.90875 1.70441 1.42895 1.43479 1.45127 1.36725 1.14921 1.40110 1.20105 0.80458 0.99694 0.90021 0.89599 1.19391 0.98100 0.86081 0.97755 1.21112 1.01471 0.94093 1.39045 0.92421 1.24983 0.96226 0.97103 0.95828 1.69947 1.30590 1.05263 1.47379 0.86656 0.83372 0.77766 0.80189 1.20211 1.21333 1.20349 1.20618 0.97079 0.95621 0.93853 1.20888 0.96708 0.99683 0.95210 1.21033 0.94957 0.99171 0.99275 1.20981 0.99510 1.00755 0.94177 1.21036 0.97155 1.00534 0.95422 1.21022 0.94290 0.97426 0.99896 0.88155 0.88523 0.86349 0.86721 0.86493 0.90277 0.90101 0.91789 0.91887 0.77320 0.77004 0.94711 0.95785 0.92840 0.86667 0.86840 0.86913 0.86653 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 14.43 28.88 0.42 -0.99 16 2 C -0.13 -1.15 9.30 -37.83 -0.35 -1.50 16 3 C -0.14 -1.17 9.83 -37.83 -0.37 -1.55 16 4 C -0.13 -1.11 9.59 -36.16 -0.35 -1.46 16 5 C -0.11 -1.00 5.57 -27.89 -0.16 -1.15 16 6 C 0.15 1.78 5.66 -4.05 -0.02 1.76 16 7 N -0.75 -10.35 5.56 -65.23 -0.36 -10.71 16 8 C 0.70 12.93 8.52 -86.93 -0.74 12.19 16 9 O -0.60 -13.30 16.01 5.28 0.08 -13.22 16 10 N -0.72 -13.13 4.02 -59.81 -0.24 -13.37 16 11 C 0.20 4.20 2.12 -69.08 -0.15 4.05 16 12 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 13 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 14 C -0.52 -13.81 8.84 -34.44 -0.30 -14.11 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.07 -1.34 4.91 -104.62 -0.51 -1.85 16 23 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 24 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 25 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 26 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 27 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 28 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.10 0.65 8.05 -52.49 -0.42 0.23 16 30 H 0.12 0.99 5.83 -52.49 -0.31 0.69 16 31 H 0.11 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.70 5.33 -51.93 -0.28 0.42 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 4.31 8.49 -40.82 -0.35 3.96 16 38 H 0.40 6.57 8.62 -40.82 -0.35 6.22 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.12 1.84 7.71 -52.49 -0.40 1.44 16 43 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 46 H 0.12 2.07 8.04 -52.48 -0.42 1.64 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -32.28 392.21 -10.71 -42.99 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -7.11 Total: 11.34 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -4.71 Total: -14.13 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.13 Total: -49.00 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.28 -10.71 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883527856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.072 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds