Wall clock time and date at job start Tue Mar 31 2020 10:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47119 * 120.00422 * 2 1 4 4 C 1.32867 * 120.00109 * 175.26229 * 3 2 1 5 5 C 1.50703 * 120.00104 * 6.15570 * 4 3 2 6 6 C 1.52993 * 109.47289 * 126.02998 * 5 4 3 7 7 N 1.46497 * 109.47429 * 180.02562 * 6 5 4 8 8 C 1.34771 * 120.00270 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00055 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00236 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00201 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47460 * 324.99769 * 11 10 8 13 13 C 1.52999 * 109.47109 * 205.00037 * 11 10 8 14 14 C 1.50707 * 109.47163 * 64.99988 * 13 11 10 15 15 H 1.07998 * 119.99729 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99719 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00478 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99393 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47303 * 60.00336 * 18 16 14 20 20 H 1.48500 * 109.46892 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47107 * 299.99899 * 18 16 14 22 22 C 1.50705 * 109.47162 * 85.00371 * 11 10 8 23 23 C 1.38233 * 119.99855 * 39.72273 * 22 11 10 24 24 C 1.38245 * 119.99567 * 179.78934 * 23 22 11 25 25 C 1.38234 * 120.00034 * 0.44581 * 24 23 22 26 26 C 1.38238 * 119.99835 * 359.80740 * 25 24 23 27 27 C 1.38231 * 120.00101 * 359.97438 * 26 25 24 28 28 H 1.07997 * 120.00135 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99715 * 359.72326 * 1 2 3 30 30 H 1.08002 * 119.99620 * 179.97438 * 2 1 3 31 31 H 1.08003 * 119.99470 * 355.26232 * 3 2 1 32 32 H 1.08002 * 119.99630 * 186.15698 * 4 3 2 33 33 H 1.09000 * 109.46812 * 246.02932 * 5 4 3 34 34 H 1.08992 * 109.47068 * 6.02387 * 5 4 3 35 35 H 1.09004 * 109.46715 * 299.99967 * 6 5 4 36 36 H 1.09002 * 109.47611 * 59.99535 * 6 5 4 37 37 H 0.97000 * 119.99666 * 359.97438 * 7 6 5 38 38 H 0.97000 * 119.99699 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47183 * 185.00279 * 13 11 10 40 40 H 1.09005 * 109.47239 * 305.00007 * 13 11 10 41 41 H 0.96991 * 120.00046 * 179.97438 * 17 16 14 42 42 H 1.08001 * 120.00233 * 0.02562 * 23 22 11 43 43 H 1.07993 * 119.99596 * 180.27361 * 24 23 22 44 44 H 1.07996 * 119.99871 * 179.83256 * 25 24 23 45 45 H 1.08000 * 120.00096 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.00345 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3897 1.2759 0.0950 5 6 4.1493 -0.0253 0.0631 6 6 5.2198 0.0358 -1.0283 7 7 5.9578 -1.2293 -1.0598 8 6 6.9553 -1.4056 -1.9488 9 8 7.2423 -0.5148 -2.7251 10 7 7.6346 -2.5693 -1.9775 11 6 8.7192 -2.7607 -2.9435 12 1 8.4725 -2.2480 -3.8731 13 6 8.9000 -4.2550 -3.2177 14 6 7.6653 -4.7950 -3.8924 15 1 6.8346 -4.1381 -4.1040 16 6 7.5963 -6.1276 -4.2395 17 7 8.6077 -6.9276 -3.9814 18 14 6.0655 -6.7969 -5.0751 19 1 5.8482 -6.0804 -6.3576 20 1 6.2411 -8.2472 -5.3414 21 1 4.8902 -6.5953 -4.1901 22 6 9.9980 -2.1948 -2.3817 23 6 10.2991 -2.3634 -1.0431 24 6 11.4742 -1.8481 -0.5287 25 6 12.3438 -1.1562 -1.3510 26 6 12.0402 -0.9832 -2.6884 27 6 10.8673 -1.5024 -3.2037 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0045 30 1 1.8687 -0.9354 0.0004 31 1 1.5271 2.2078 -0.0773 32 1 3.9225 2.2100 0.1952 33 1 4.6248 -0.1921 1.0295 34 1 3.4605 -0.8429 -0.1489 35 1 4.7442 0.2027 -1.9948 36 1 5.9086 0.8536 -0.8163 37 1 5.7286 -1.9400 -0.4408 38 1 7.4058 -3.2797 -1.3579 39 1 9.7631 -4.4035 -3.8667 40 1 9.0588 -4.7807 -2.2761 41 1 8.5590 -7.8651 -4.2253 42 1 9.6180 -2.9010 -0.4000 43 1 11.7115 -1.9836 0.5160 44 1 13.2605 -0.7513 -0.9485 45 1 12.7197 -0.4430 -3.3310 46 1 10.6302 -1.3675 -4.2488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883527856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:10 Heat of formation + Delta-G solvation = -0.000696 kcal Electronic energy + Delta-G solvation = -25063.085186 eV Core-core repulsion = 21531.195577 eV Total energy + Delta-G solvation = -3531.889610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.21402 -39.90202 -37.87000 -36.80570 -35.59803 -34.71122 -33.12981 -32.08239 -31.65164 -30.53753 -29.21091 -26.65879 -24.24237 -23.76212 -23.31574 -22.67365 -22.08786 -21.25868 -19.70785 -18.83347 -18.55985 -17.74896 -17.27698 -16.95497 -16.51397 -16.25989 -16.07797 -15.79769 -15.44617 -15.23216 -14.87322 -14.73751 -14.41308 -14.16954 -14.05245 -13.64725 -13.41887 -13.24958 -13.12957 -12.97973 -12.89848 -12.63758 -12.46711 -12.41315 -12.12860 -11.85828 -11.65291 -11.57021 -11.46238 -11.32888 -11.22930 -10.57820 -10.26787 -9.75320 -9.67406 -9.48798 -9.20778 -8.19432 -6.29457 0.47878 0.53507 0.58025 1.39832 1.41843 1.49753 1.84186 2.23701 2.27482 2.40453 2.97597 3.13917 3.46236 3.86340 4.02011 4.05677 4.05946 4.18802 4.20355 4.22826 4.33874 4.39428 4.46556 4.62241 4.67498 4.76574 4.78217 4.81185 4.90139 5.00431 5.09742 5.14808 5.22045 5.31216 5.44450 5.49093 5.56622 5.62977 5.64142 5.64768 5.66349 5.79164 5.81039 5.91218 6.03664 6.15497 6.18422 6.23068 6.82866 7.21282 7.39492 7.70287 8.91120 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007812 B = 0.003894 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.588505 B = 7188.022104 C =10239.517516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.155 4.155 3 C -0.140 4.140 4 C -0.142 4.142 5 C -0.100 4.100 6 C 0.149 3.851 7 N -0.736 5.736 8 C 0.700 3.300 9 O -0.640 6.640 10 N -0.712 5.712 11 C 0.219 3.781 12 H 0.054 0.946 13 C 0.039 3.961 14 C -0.529 4.529 15 H 0.052 0.948 16 C 0.012 3.988 17 N -0.926 5.926 18 Si 0.956 3.044 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.266 1.266 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.134 4.134 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.410 0.590 38 H 0.405 0.595 39 H 0.004 0.996 40 H 0.013 0.987 41 H 0.264 0.736 42 H 0.121 0.879 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 13.599 12.801 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C -0.158 4.158 4 C -0.161 4.161 5 C -0.138 4.138 6 C 0.024 3.976 7 N -0.393 5.393 8 C 0.400 3.600 9 O -0.522 6.522 10 N -0.365 5.365 11 C 0.113 3.887 12 H 0.072 0.928 13 C 0.002 3.998 14 C -0.567 4.567 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.566 5.566 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.100 4.100 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.153 4.153 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.246 0.754 38 H 0.240 0.760 39 H 0.022 0.978 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.139 0.861 43 H 0.164 0.836 44 H 0.169 0.831 45 H 0.161 0.839 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.165 14.217 12.079 19.647 hybrid contribution -0.864 -1.293 -0.403 1.607 sum -7.029 12.923 11.676 18.781 Atomic orbital electron populations 1.24580 0.95539 1.02823 0.98432 1.22295 0.96007 0.97388 1.01565 1.22074 0.94925 0.97289 1.01525 1.23290 0.94976 0.98465 0.99359 1.20936 0.96701 0.97394 0.98727 1.21060 0.92914 0.84646 0.98947 1.44955 1.36093 1.19394 1.38845 1.16142 0.79917 0.82673 0.81317 1.90841 1.71799 1.44147 1.45377 1.44914 1.36433 1.15413 1.39713 1.19558 0.82491 0.96873 0.89755 0.92775 1.19126 0.96062 0.88475 0.96179 1.21366 1.01976 0.94306 1.39089 0.92998 1.25762 0.99117 0.97405 0.96396 1.70058 1.32466 1.05576 1.48464 0.85648 0.80046 0.77105 0.79096 1.20227 1.20777 1.19095 1.20509 0.96655 0.97599 0.95198 1.21055 0.98055 1.00273 0.94405 1.21441 0.93852 0.98008 1.01020 1.21464 1.00445 0.99356 0.93521 1.21383 0.96368 0.99887 0.96593 1.21179 0.95683 0.98655 0.99745 0.87354 0.87560 0.86422 0.85618 0.85577 0.88790 0.89717 0.93604 0.92426 0.75425 0.76005 0.97757 0.96849 0.92700 0.86123 0.83580 0.83106 0.83888 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.43 66.64 0.96 -1.46 16 2 C -0.15 -2.46 9.30 23.43 0.22 -2.24 16 3 C -0.14 -2.17 9.83 23.43 0.23 -1.94 16 4 C -0.14 -2.21 9.59 24.51 0.24 -1.97 16 5 C -0.10 -1.63 5.57 29.85 0.17 -1.46 16 6 C 0.15 3.54 5.66 86.38 0.49 4.03 16 7 N -0.74 -19.94 5.56 -478.55 -2.66 -22.60 16 8 C 0.70 26.29 8.52 179.06 1.53 27.82 16 9 O -0.64 -29.50 16.01 -4.01 -0.06 -29.56 16 10 N -0.71 -26.87 4.02 -461.41 -1.86 -28.73 16 11 C 0.22 9.59 2.12 44.25 0.09 9.69 16 12 H 0.05 2.68 7.44 -2.39 -0.02 2.66 16 13 C 0.04 1.98 4.50 29.85 0.13 2.12 16 14 C -0.53 -29.00 8.84 25.60 0.23 -28.78 16 15 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 16 C 0.01 0.66 5.46 84.66 0.46 1.12 16 17 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 18 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 C -0.10 -3.86 4.91 -19.86 -0.10 -3.96 16 23 C -0.12 -4.06 9.33 22.27 0.21 -3.86 16 24 C -0.13 -3.51 10.05 22.27 0.22 -3.28 16 25 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 26 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 27 C -0.13 -4.94 9.67 22.27 0.22 -4.73 16 28 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 29 H 0.11 1.22 8.05 -2.91 -0.02 1.20 16 30 H 0.12 1.83 5.83 -2.91 -0.02 1.81 16 31 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.33 5.33 -2.39 -0.01 1.32 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.41 8.48 8.49 -92.71 -0.79 7.69 16 38 H 0.40 13.64 8.62 -92.71 -0.80 12.84 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.26 14.64 8.31 -92.72 -0.77 13.87 16 42 H 0.12 3.83 7.71 -2.91 -0.02 3.80 16 43 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 44 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 45 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 46 H 0.11 4.12 8.04 -2.91 -0.02 4.10 16 Total: -1.00 -71.53 392.21 2.86 -68.67 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.61 Total: 36.04 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 5.74 Total: -15.56 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -4.23 Total: -105.19 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.06 Total: -29.56 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -71.53 2.86 -68.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883527856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.672 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds