Wall clock time and date at job start Tue Mar 31 2020 12:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46635 * 2 1 4 4 H 1.09005 * 109.86130 * 51.04838 * 3 2 1 5 5 C 1.50779 * 109.80833 * 171.91657 * 3 2 1 6 6 C 1.38446 * 131.20681 * 299.51000 * 5 3 2 7 7 C 1.38145 * 120.10581 * 180.02562 * 6 5 3 8 8 C 1.38250 * 119.96106 * 0.02562 * 7 6 5 9 9 C 1.38145 * 119.96295 * 359.97438 * 8 7 6 10 10 C 1.38074 * 108.85970 * 119.78283 * 5 3 2 11 11 C 1.50771 * 108.86160 * 0.08851 * 10 5 3 12 12 N 1.46634 * 107.70468 * 0.23306 * 11 10 5 13 13 C 1.34770 * 126.56389 * 180.02562 * 12 11 10 14 14 O 1.21592 * 120.00008 * 177.59876 * 13 12 11 15 15 N 1.34773 * 120.00481 * 357.60326 * 13 12 11 16 16 C 1.46495 * 120.00704 * 185.03195 * 15 13 12 17 17 C 1.52998 * 109.47593 * 185.00013 * 16 15 13 18 18 C 1.50694 * 115.55006 * 272.52861 * 17 16 15 19 19 H 1.07997 * 120.00159 * 124.29817 * 18 17 16 20 20 C 1.37878 * 119.99748 * 304.29919 * 18 17 16 21 21 N 1.31510 * 120.00080 * 354.76896 * 20 18 17 22 22 Si 1.86804 * 119.99909 * 174.77337 * 20 18 17 23 23 H 1.48501 * 109.47064 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47127 * 119.99571 * 22 20 18 25 25 H 1.48491 * 109.47266 * 239.99961 * 22 20 18 26 26 C 1.53004 * 117.50265 * 126.81901 * 17 16 15 27 27 C 1.53002 * 117.49689 * 58.19556 * 17 16 15 28 28 H 1.09001 * 109.47309 * 84.71268 * 1 2 3 29 29 H 1.09006 * 109.46496 * 204.71246 * 1 2 3 30 30 H 1.09000 * 109.47129 * 324.71015 * 1 2 3 31 31 H 1.09000 * 109.46843 * 240.00351 * 2 1 3 32 32 H 1.08998 * 109.47311 * 120.00374 * 2 1 3 33 33 H 1.08005 * 119.94754 * 0.02562 * 6 5 3 34 34 H 1.08003 * 120.02091 * 179.97438 * 7 6 5 35 35 H 1.08006 * 120.01961 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.95131 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.81483 * 119.78317 * 11 10 5 38 38 H 1.09001 * 109.80826 * 240.61679 * 11 10 5 39 39 H 0.97008 * 119.99769 * 5.02072 * 15 13 12 40 40 H 1.09004 * 109.46714 * 304.99981 * 16 15 13 41 41 H 1.08997 * 109.47803 * 64.99477 * 16 15 13 42 42 H 0.97007 * 119.99924 * 185.00533 * 21 20 18 43 43 H 1.09002 * 117.49489 * 0.02562 * 26 17 16 44 44 H 1.08997 * 117.50016 * 145.01964 * 26 17 16 45 45 H 1.08998 * 117.49903 * 214.98244 * 27 17 16 46 46 H 1.09000 * 117.50275 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5557 2.0065 0.7973 5 6 3.5344 1.4563 0.1995 6 6 4.3197 0.9945 1.2420 7 6 5.6936 1.1273 1.1862 8 6 6.2856 1.7227 0.0878 9 6 5.5027 2.1836 -0.9528 10 6 4.1253 2.0554 -0.8952 11 6 3.0480 2.4667 -1.8664 12 7 1.7562 2.0830 -1.2883 13 6 0.5414 2.2729 -1.8402 14 8 -0.4543 1.8665 -1.2729 15 7 0.4302 2.9131 -3.0209 16 6 -0.8945 3.2172 -3.5675 17 6 -0.7429 3.8285 -4.9618 18 6 -0.5612 5.3240 -4.9996 19 1 0.2974 5.7513 -5.4962 20 6 -1.4910 6.1467 -4.4000 21 7 -2.5875 5.6345 -3.8854 22 14 -1.1933 7.9891 -4.3187 23 1 0.1049 8.3097 -4.9645 24 1 -2.2881 8.6992 -5.0277 25 1 -1.1599 8.4230 -2.8990 26 6 -1.5277 3.1827 -6.1056 27 6 -0.0109 3.0010 -6.0203 28 1 -0.3634 0.0947 -1.0233 29 1 -0.3632 -0.9336 0.4297 30 1 -0.3633 0.8388 0.5937 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8574 0.5298 2.1004 34 1 6.3048 0.7671 2.0005 35 1 7.3597 1.8267 0.0430 36 1 5.9653 2.6490 -1.8105 37 1 3.0791 3.5457 -2.0176 38 1 3.1942 1.9560 -2.8183 39 1 1.2275 3.1727 -3.5088 40 1 -1.4791 2.2996 -3.6347 41 1 -1.4036 3.9253 -2.9137 42 1 -3.2748 6.2188 -3.5287 43 1 -2.1523 2.3226 -5.8645 44 1 -1.9128 3.8396 -6.8855 45 1 0.6019 3.5383 -6.7441 46 1 0.3624 2.0208 -5.7234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894564171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:06 Heat of formation + Delta-G solvation = 41.789284 kcal Electronic energy + Delta-G solvation = -26482.396462 eV Core-core repulsion = 22952.319002 eV Total energy + Delta-G solvation = -3530.077460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94300 -38.98392 -37.00018 -35.99623 -34.04594 -32.54433 -32.11514 -30.94136 -30.89985 -27.21078 -26.43250 -25.48430 -24.38066 -22.60727 -21.55817 -21.36574 -20.86426 -19.31319 -19.20243 -17.74003 -16.50492 -16.30693 -16.04734 -15.83827 -14.91162 -14.76927 -14.65294 -14.24234 -14.09665 -13.80120 -13.67341 -13.29174 -13.17083 -12.91043 -12.64077 -12.41017 -12.26224 -12.01550 -11.61757 -11.57659 -11.24803 -11.15829 -11.02991 -10.89010 -10.66345 -10.52743 -10.46242 -10.32203 -9.57543 -9.32158 -9.04394 -9.02040 -8.96869 -8.70531 -8.24155 -8.21168 -7.87948 -6.09297 -4.16222 1.10730 1.16333 2.90790 3.24617 3.33952 3.35765 3.51889 3.73464 4.11535 4.34151 4.36253 4.60763 4.78488 4.83852 5.07785 5.12624 5.20053 5.30437 5.35290 5.39513 5.42441 5.49799 5.52933 5.75175 5.81775 5.84911 6.00006 6.07185 6.16875 6.21174 6.28614 6.29646 6.33257 6.47657 6.51511 6.59386 6.60810 6.70624 6.74910 6.90590 7.01427 7.03760 7.29994 7.45079 7.54654 7.63690 7.87293 8.33767 8.58314 8.83387 9.20434 9.47915 10.97102 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.003697 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.448546 B = 7571.453630 C = 8205.303896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.200 3.800 4 H 0.083 0.917 5 C -0.096 4.096 6 C -0.095 4.095 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.097 4.097 10 C -0.099 4.099 11 C 0.143 3.857 12 N -0.634 5.634 13 C 0.718 3.282 14 O -0.575 6.575 15 N -0.723 5.723 16 C 0.177 3.823 17 C 0.038 3.962 18 C -0.496 4.496 19 H 0.061 0.939 20 C 0.071 3.929 21 N -0.875 5.875 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.177 4.177 27 C -0.208 4.208 28 H 0.084 0.916 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.391 0.609 40 H 0.038 0.962 41 H 0.093 0.907 42 H 0.263 0.737 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.695 -9.145 7.923 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.095 3.905 4 H 0.100 0.900 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.115 4.115 10 C -0.100 4.100 11 C 0.020 3.980 12 N -0.373 5.373 13 C 0.421 3.579 14 O -0.454 6.454 15 N -0.376 5.376 16 C 0.055 3.945 17 C 0.037 3.963 18 C -0.534 4.534 19 H 0.079 0.921 20 C -0.132 4.132 21 N -0.511 5.511 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.215 4.215 27 C -0.245 4.245 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.224 0.776 40 H 0.056 0.944 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.627 -9.327 8.425 19.285 hybrid contribution 0.578 1.151 -0.289 1.320 sum 15.205 -8.176 8.136 19.085 Atomic orbital electron populations 1.22172 0.93271 0.99440 1.04967 1.21857 0.98158 0.94457 1.01535 1.19757 0.89963 0.94394 0.86350 0.89963 1.20400 0.95109 0.98877 0.95248 1.20478 0.93231 0.99958 0.97684 1.21048 0.94311 0.99813 0.98480 1.21049 0.99770 0.98950 0.93865 1.20499 0.91526 1.00226 0.99262 1.20333 0.93988 0.99334 0.96315 1.20226 0.81622 1.00673 0.95489 1.47059 1.04306 1.64530 1.21447 1.15326 0.81347 0.79651 0.81591 1.90940 1.35264 1.55258 1.63895 1.45397 1.11161 1.60715 1.20288 1.20970 0.80076 0.97844 0.95626 1.19119 0.97998 0.93239 0.85895 1.20515 1.08872 0.88404 1.35577 0.92072 1.24984 0.95135 0.98664 0.94450 1.69916 1.07083 1.34992 1.39146 0.86544 0.78307 0.85380 0.77836 1.19735 1.20953 1.20903 1.22830 0.91898 1.02041 1.04752 1.22851 0.95408 1.00435 1.05842 0.89753 0.95377 0.91979 0.92179 0.91802 0.85835 0.85672 0.85650 0.85683 0.89983 0.90486 0.77579 0.94388 0.88864 0.92701 0.91544 0.90101 0.90483 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.10 37.16 0.30 -1.93 16 2 C -0.12 -1.63 5.58 -26.73 -0.15 -1.78 16 3 C 0.20 2.81 3.10 -68.97 -0.21 2.60 16 4 H 0.08 1.23 7.93 -51.93 -0.41 0.81 16 5 C -0.10 -1.15 5.50 -104.57 -0.57 -1.73 16 6 C -0.10 -0.94 9.99 -39.54 -0.39 -1.34 16 7 C -0.12 -1.01 10.05 -39.61 -0.40 -1.41 16 8 C -0.12 -1.01 10.05 -39.61 -0.40 -1.40 16 9 C -0.10 -0.94 10.05 -39.54 -0.40 -1.34 16 10 C -0.10 -1.17 6.22 -104.57 -0.65 -1.82 16 11 C 0.14 1.85 6.22 -5.09 -0.03 1.82 16 12 N -0.63 -10.02 3.09 -174.20 -0.54 -10.56 16 13 C 0.72 14.00 8.16 -86.93 -0.71 13.29 16 14 O -0.58 -12.69 11.23 5.28 0.06 -12.63 16 15 N -0.72 -14.37 5.39 -65.23 -0.35 -14.73 16 16 C 0.18 4.15 5.47 -4.05 -0.02 4.13 16 17 C 0.04 0.90 1.54 -155.66 -0.24 0.66 16 18 C -0.50 -12.83 8.90 -34.44 -0.31 -13.14 16 19 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 20 C 0.07 1.89 5.22 -17.82 -0.09 1.80 16 21 N -0.88 -24.24 11.72 55.43 0.65 -23.59 16 22 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.18 -3.94 9.88 -26.73 -0.26 -4.20 16 27 C -0.21 -4.22 9.64 -26.73 -0.26 -4.48 16 28 H 0.08 1.58 5.71 -52.02 -0.30 1.29 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 1.07 6.90 -51.93 -0.36 0.71 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.39 7.05 7.38 -40.82 -0.30 6.75 16 40 H 0.04 0.91 7.85 -51.93 -0.41 0.50 16 41 H 0.09 2.53 6.35 -51.93 -0.33 2.20 16 42 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 43 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 44 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 45 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -29.16 369.54 -11.57 -40.73 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.14 Total: 9.90 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -4.80 Total: -10.27 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.24 Total: -48.88 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.06 Total: -12.63 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.16 -11.57 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894564171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.522 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds