Wall clock time and date at job start Tue Mar 31 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46635 * 2 1 4 4 H 1.09005 * 109.86130 * 51.04838 * 3 2 1 5 5 C 1.50779 * 109.80833 * 171.91657 * 3 2 1 6 6 C 1.38446 * 131.20681 * 299.51000 * 5 3 2 7 7 C 1.38145 * 120.10581 * 180.02562 * 6 5 3 8 8 C 1.38250 * 119.96106 * 0.02562 * 7 6 5 9 9 C 1.38145 * 119.96295 * 359.97438 * 8 7 6 10 10 C 1.38074 * 108.85970 * 119.78283 * 5 3 2 11 11 C 1.50771 * 108.86160 * 0.08851 * 10 5 3 12 12 N 1.46634 * 107.70468 * 0.23306 * 11 10 5 13 13 C 1.34770 * 126.56389 * 180.02562 * 12 11 10 14 14 O 1.21592 * 120.00008 * 177.59876 * 13 12 11 15 15 N 1.34773 * 120.00481 * 357.60326 * 13 12 11 16 16 C 1.46495 * 120.00704 * 185.03195 * 15 13 12 17 17 C 1.52998 * 109.47593 * 185.00013 * 16 15 13 18 18 C 1.50694 * 115.55006 * 272.52861 * 17 16 15 19 19 H 1.07997 * 120.00159 * 124.29817 * 18 17 16 20 20 C 1.37878 * 119.99748 * 304.29919 * 18 17 16 21 21 N 1.31510 * 120.00080 * 354.76896 * 20 18 17 22 22 Si 1.86804 * 119.99909 * 174.77337 * 20 18 17 23 23 H 1.48501 * 109.47064 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47127 * 119.99571 * 22 20 18 25 25 H 1.48491 * 109.47266 * 239.99961 * 22 20 18 26 26 C 1.53004 * 117.50265 * 126.81901 * 17 16 15 27 27 C 1.53002 * 117.49689 * 58.19556 * 17 16 15 28 28 H 1.09001 * 109.47309 * 84.71268 * 1 2 3 29 29 H 1.09006 * 109.46496 * 204.71246 * 1 2 3 30 30 H 1.09000 * 109.47129 * 324.71015 * 1 2 3 31 31 H 1.09000 * 109.46843 * 240.00351 * 2 1 3 32 32 H 1.08998 * 109.47311 * 120.00374 * 2 1 3 33 33 H 1.08005 * 119.94754 * 0.02562 * 6 5 3 34 34 H 1.08003 * 120.02091 * 179.97438 * 7 6 5 35 35 H 1.08006 * 120.01961 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.95131 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.81483 * 119.78317 * 11 10 5 38 38 H 1.09001 * 109.80826 * 240.61679 * 11 10 5 39 39 H 0.97008 * 119.99769 * 5.02072 * 15 13 12 40 40 H 1.09004 * 109.46714 * 304.99981 * 16 15 13 41 41 H 1.08997 * 109.47803 * 64.99477 * 16 15 13 42 42 H 0.97007 * 119.99924 * 185.00533 * 21 20 18 43 43 H 1.09002 * 117.49489 * 0.02562 * 26 17 16 44 44 H 1.08997 * 117.50016 * 145.01964 * 26 17 16 45 45 H 1.08998 * 117.49903 * 214.98244 * 27 17 16 46 46 H 1.09000 * 117.50275 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5557 2.0065 0.7973 5 6 3.5344 1.4563 0.1995 6 6 4.3197 0.9945 1.2420 7 6 5.6936 1.1273 1.1862 8 6 6.2856 1.7227 0.0878 9 6 5.5027 2.1836 -0.9528 10 6 4.1253 2.0554 -0.8952 11 6 3.0480 2.4667 -1.8664 12 7 1.7562 2.0830 -1.2883 13 6 0.5414 2.2729 -1.8402 14 8 -0.4543 1.8665 -1.2729 15 7 0.4302 2.9131 -3.0209 16 6 -0.8945 3.2172 -3.5675 17 6 -0.7429 3.8285 -4.9618 18 6 -0.5612 5.3240 -4.9996 19 1 0.2974 5.7513 -5.4962 20 6 -1.4910 6.1467 -4.4000 21 7 -2.5875 5.6345 -3.8854 22 14 -1.1933 7.9891 -4.3187 23 1 0.1049 8.3097 -4.9645 24 1 -2.2881 8.6992 -5.0277 25 1 -1.1599 8.4230 -2.8990 26 6 -1.5277 3.1827 -6.1056 27 6 -0.0109 3.0010 -6.0203 28 1 -0.3634 0.0947 -1.0233 29 1 -0.3632 -0.9336 0.4297 30 1 -0.3633 0.8388 0.5937 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8574 0.5298 2.1004 34 1 6.3048 0.7671 2.0005 35 1 7.3597 1.8267 0.0430 36 1 5.9653 2.6490 -1.8105 37 1 3.0791 3.5457 -2.0176 38 1 3.1942 1.9560 -2.8183 39 1 1.2275 3.1727 -3.5088 40 1 -1.4791 2.2996 -3.6347 41 1 -1.4036 3.9253 -2.9137 42 1 -3.2748 6.2188 -3.5287 43 1 -2.1523 2.3226 -5.8645 44 1 -1.9128 3.8396 -6.8855 45 1 0.6019 3.5383 -6.7441 46 1 0.3624 2.0208 -5.7234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894564171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:05 Heat of formation + Delta-G solvation = 27.152032 kcal Electronic energy + Delta-G solvation = -26483.031181 eV Core-core repulsion = 22952.319002 eV Total energy + Delta-G solvation = -3530.712179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04225 -40.26656 -38.63428 -37.21163 -35.45840 -34.13801 -33.86577 -31.94426 -31.79032 -28.30245 -28.07347 -27.22098 -25.73409 -23.65315 -23.04965 -22.38207 -22.00276 -21.14043 -20.58702 -19.19528 -17.99827 -17.51768 -17.21905 -17.08198 -16.66451 -15.98497 -15.90885 -15.60664 -15.34645 -15.20130 -14.97199 -14.49316 -14.47486 -14.06274 -13.89526 -13.69183 -13.45122 -13.32663 -13.20226 -12.95359 -12.84489 -12.76708 -12.49269 -12.31611 -12.06956 -12.00064 -11.75035 -11.58364 -11.39193 -10.94626 -10.87211 -10.59487 -10.09763 -10.02440 -9.74986 -9.69892 -9.21337 -8.10650 -6.22493 0.34730 0.44608 1.40137 1.44072 1.53267 1.55233 2.19281 2.41359 2.78728 2.98983 3.13074 3.36972 3.41123 3.61278 3.95111 4.07430 4.19891 4.23555 4.27190 4.39631 4.43306 4.47231 4.54465 4.58608 4.66064 4.67939 4.73574 4.81344 4.89721 4.94394 4.94886 5.03156 5.05737 5.12939 5.21757 5.25416 5.33310 5.50217 5.54479 5.58546 5.60307 5.61276 5.68380 5.81653 5.88306 6.05804 6.13208 6.36576 6.81509 7.09195 7.44230 7.66248 8.95251 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.003697 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.448546 B = 7571.453630 C = 8205.303896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.196 3.804 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.100 4.100 7 C -0.115 4.115 8 C -0.114 4.114 9 C -0.101 4.101 10 C -0.115 4.115 11 C 0.140 3.860 12 N -0.632 5.632 13 C 0.713 3.287 14 O -0.608 6.608 15 N -0.719 5.719 16 C 0.198 3.802 17 C 0.012 3.988 18 C -0.502 4.502 19 H 0.062 0.938 20 C 0.024 3.976 21 N -0.907 5.907 22 Si 0.951 3.049 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.289 1.289 26 C -0.185 4.185 27 C -0.172 4.172 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.401 0.599 40 H 0.024 0.976 41 H 0.051 0.949 42 H 0.260 0.740 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.383 -9.710 8.272 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C 0.092 3.908 4 H 0.083 0.917 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.132 4.132 8 C -0.132 4.132 9 C -0.119 4.119 10 C -0.115 4.115 11 C 0.017 3.983 12 N -0.370 5.370 13 C 0.416 3.584 14 O -0.488 6.488 15 N -0.373 5.373 16 C 0.074 3.926 17 C 0.011 3.989 18 C -0.540 4.540 19 H 0.080 0.920 20 C -0.177 4.177 21 N -0.545 5.545 22 Si 0.777 3.223 23 H -0.185 1.185 24 H -0.208 1.208 25 H -0.215 1.215 26 C -0.223 4.223 27 C -0.209 4.209 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.236 0.764 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.382 -9.896 8.768 22.643 hybrid contribution -0.496 1.277 -0.345 1.412 sum 17.885 -8.620 8.423 21.567 Atomic orbital electron populations 1.21982 0.95239 0.99340 1.02424 1.21789 0.96123 0.94477 1.02687 1.19832 0.91962 0.94189 0.84838 0.91699 1.20273 0.93466 1.00963 0.96680 1.20747 0.93928 0.99664 0.97437 1.21449 0.93862 0.98694 0.99235 1.21467 1.01240 0.97445 0.93041 1.20780 0.90580 1.00085 1.00432 1.20309 0.94656 1.00578 0.95983 1.20367 0.80692 1.00793 0.96422 1.46975 1.04211 1.63806 1.22048 1.15431 0.82192 0.79446 0.81356 1.90936 1.36956 1.56373 1.64568 1.45130 1.10267 1.61087 1.20772 1.20424 0.81205 0.95852 0.95088 1.19096 1.00673 0.92808 0.86361 1.20807 1.08496 0.89775 1.34929 0.91970 1.25690 0.95020 1.02520 0.94438 1.70054 1.07940 1.36127 1.40377 0.85616 0.78534 0.80839 0.77331 1.18540 1.20805 1.21491 1.22813 0.93672 1.01963 1.03886 1.22849 0.93955 1.00562 1.03547 0.93082 0.93579 0.94202 0.92471 0.88941 0.84271 0.82704 0.82693 0.83897 0.90098 0.89391 0.76413 0.95814 0.93090 0.93084 0.91167 0.90968 0.89223 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.10 71.98 0.58 -3.74 16 2 C -0.11 -2.98 5.58 30.60 0.17 -2.81 16 3 C 0.20 5.53 3.10 44.24 0.14 5.67 16 4 H 0.07 2.02 7.93 -2.38 -0.02 2.00 16 5 C -0.11 -2.56 5.50 -19.83 -0.11 -2.67 16 6 C -0.10 -1.69 9.99 22.30 0.22 -1.47 16 7 C -0.11 -1.49 10.05 22.25 0.22 -1.26 16 8 C -0.11 -1.47 10.05 22.25 0.22 -1.24 16 9 C -0.10 -1.64 10.05 22.30 0.22 -1.42 16 10 C -0.11 -2.51 6.22 -19.83 -0.12 -2.63 16 11 C 0.14 3.52 6.22 85.63 0.53 4.06 16 12 N -0.63 -20.37 3.09 -823.30 -2.54 -22.92 16 13 C 0.71 28.93 8.16 179.06 1.46 30.39 16 14 O -0.61 -28.45 11.23 -4.01 -0.05 -28.49 16 15 N -0.72 -29.34 5.39 -478.55 -2.58 -31.92 16 16 C 0.20 9.64 5.47 86.38 0.47 10.12 16 17 C 0.01 0.54 1.54 -52.93 -0.08 0.46 16 18 C -0.50 -26.11 8.90 25.60 0.23 -25.88 16 19 H 0.06 3.15 7.82 -2.91 -0.02 3.12 16 20 C 0.02 1.28 5.22 84.66 0.44 1.72 16 21 N -0.91 -51.98 11.72 21.45 0.25 -51.73 16 22 Si 0.95 42.75 29.54 68.60 2.03 44.77 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 C -0.18 -8.24 9.88 30.60 0.30 -7.94 16 27 C -0.17 -6.72 9.64 30.60 0.29 -6.43 16 28 H 0.05 2.02 5.71 -3.82 -0.02 1.99 16 29 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.04 1.44 6.90 -2.39 -0.02 1.43 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 33 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.40 14.47 7.38 -92.70 -0.68 13.79 16 40 H 0.02 1.19 7.85 -2.38 -0.02 1.17 16 41 H 0.05 2.92 6.35 -2.39 -0.02 2.91 16 42 H 0.26 14.36 8.32 -92.70 -0.77 13.59 16 43 H 0.07 3.03 8.04 -2.39 -0.02 3.01 16 44 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 46 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -65.72 369.54 2.60 -63.12 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.28 Total: 32.25 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.20 Total: -5.08 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -4.87 Total: -106.57 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.05 Total: -28.49 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -65.72 2.60 -63.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894564171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.272 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds