Wall clock time and date at job start Tue Mar 31 2020 11:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47416 * 2 1 4 4 C 1.52999 * 109.46776 * 295.22644 * 3 2 1 5 5 C 1.52994 * 109.47199 * 175.22485 * 3 2 1 6 6 N 1.46505 * 109.46700 * 55.22555 * 3 2 1 7 7 C 1.46496 * 119.99560 * 237.81190 * 6 3 2 8 8 C 1.50698 * 109.47172 * 275.34670 * 7 6 3 9 9 H 1.07999 * 120.00040 * 4.46966 * 8 7 6 10 10 C 1.37880 * 119.99755 * 184.46826 * 8 7 6 11 11 N 1.31514 * 120.00394 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99913 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47312 * 59.99797 * 12 10 8 14 14 H 1.48500 * 109.47068 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.46886 * 300.00009 * 12 10 8 16 16 C 1.34775 * 120.00121 * 57.81532 * 6 3 2 17 17 O 1.21551 * 119.99722 * 4.37927 * 16 6 3 18 18 C 1.47862 * 119.99990 * 184.37967 * 16 6 3 19 19 C 1.39331 * 120.06947 * 305.52461 * 18 16 6 20 20 C 1.39353 * 119.70087 * 179.97438 * 19 18 16 21 21 C 1.43201 * 120.08418 * 180.02562 * 20 19 18 22 22 N 8.65259 * 85.19499 * 36.73954 * 2 1 3 23 23 C 1.39758 * 119.84016 * 359.97438 * 20 19 18 24 24 C 1.38044 * 120.13650 * 0.02562 * 23 20 19 25 25 C 1.38105 * 120.30486 * 359.73732 * 24 23 20 26 26 C 1.50698 * 119.92146 * 180.26245 * 25 24 23 27 27 H 1.08995 * 109.47030 * 65.81731 * 1 2 3 28 28 H 1.08995 * 109.46915 * 185.81673 * 1 2 3 29 29 H 1.09000 * 109.47059 * 305.81575 * 1 2 3 30 30 H 1.09007 * 109.47463 * 240.00056 * 2 1 3 31 31 H 1.09008 * 109.47254 * 119.99977 * 2 1 3 32 32 H 1.09003 * 109.46889 * 182.32550 * 4 3 2 33 33 H 1.08988 * 109.47279 * 302.32649 * 4 3 2 34 34 H 1.09000 * 109.47215 * 62.33201 * 4 3 2 35 35 H 1.09008 * 109.47503 * 300.00069 * 5 3 2 36 36 H 1.09001 * 109.47536 * 60.00117 * 5 3 2 37 37 H 1.09004 * 109.47168 * 179.97438 * 5 3 2 38 38 H 1.08997 * 109.47249 * 35.35361 * 7 6 3 39 39 H 1.09006 * 109.46587 * 155.35040 * 7 6 3 40 40 H 0.96997 * 120.00109 * 180.02562 * 11 10 8 41 41 H 1.07997 * 120.14868 * 359.95135 * 19 18 16 42 42 H 1.08000 * 119.93211 * 180.02562 * 23 20 19 43 43 H 1.08005 * 119.84987 * 180.02562 * 24 23 20 44 44 H 1.09007 * 109.46980 * 273.53824 * 26 25 24 45 45 H 1.09003 * 109.47493 * 33.53615 * 26 25 24 46 46 H 1.09001 * 109.47836 * 153.53992 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6305 2.1282 -1.3049 5 6 3.5653 1.4441 0.1201 6 7 1.4601 2.1655 1.1346 7 6 0.6722 3.3789 0.9044 8 6 1.5959 4.5648 0.7971 9 1 2.6658 4.4196 0.8187 10 6 1.0749 5.8352 0.6714 11 7 -0.2280 6.0121 0.6456 12 14 2.2198 7.3051 0.5377 13 1 3.0845 7.1519 -0.6598 14 1 1.4169 8.5482 0.4134 15 1 3.0682 7.3840 1.7540 16 6 1.6515 1.7143 2.3901 17 8 2.3704 0.7543 2.5879 18 6 0.9870 2.3871 3.5268 19 6 1.1485 3.7577 3.7181 20 6 0.5182 4.3840 4.7916 21 6 0.6781 5.7924 4.9957 22 7 0.8052 6.9095 5.1576 23 6 -0.2712 3.6345 5.6681 24 6 -0.4267 2.2769 5.4723 25 6 0.1913 1.6511 4.4075 26 6 0.0109 0.1696 4.1985 27 1 -0.3633 0.4210 -0.9374 28 1 -0.3633 -1.0223 0.1041 29 1 -0.3633 0.6014 0.8333 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0290 3.1426 -1.3230 33 1 2.0274 1.5668 -2.1506 34 1 0.5430 2.1640 -1.3708 35 1 3.8572 0.9556 1.0498 36 1 3.9969 0.9062 -0.7240 37 1 3.9287 2.4718 0.1196 38 1 0.1061 3.2743 -0.0211 39 1 -0.0160 3.5284 1.7364 40 1 -0.5945 6.9057 0.5568 41 1 1.7596 4.3320 3.0377 42 1 -0.7607 4.1185 6.5004 43 1 -1.0382 1.7022 6.1523 44 1 0.7530 -0.3729 4.7843 45 1 -0.9892 -0.1233 4.5181 46 1 0.1385 -0.0666 3.1421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904678199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:49 Heat of formation + Delta-G solvation = -1.325913 kcal Electronic energy + Delta-G solvation = -27869.116293 eV Core-core repulsion = 24337.169218 eV Total energy + Delta-G solvation = -3531.947075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.72191 -39.97426 -37.92005 -37.34081 -35.56066 -33.88270 -33.76670 -31.97806 -31.08580 -29.48940 -28.51219 -27.86763 -25.02497 -24.78182 -23.83574 -23.32013 -22.18215 -20.01491 -18.80089 -18.54040 -17.37234 -17.09833 -16.74536 -16.39564 -16.35387 -15.83496 -15.49929 -15.09580 -14.96189 -14.64872 -14.38771 -14.26538 -14.15532 -14.07534 -13.97706 -13.76189 -13.49103 -13.34148 -13.00148 -12.94525 -12.85617 -12.80228 -12.68603 -12.52369 -12.47735 -12.26579 -12.22995 -12.12172 -11.95201 -11.71060 -11.51412 -11.31355 -10.61656 -10.35041 -9.79694 -9.64439 -9.29153 -8.20837 -6.29329 -0.21402 0.25135 1.29072 1.35306 1.36746 1.59226 1.74055 2.05559 2.27338 2.43026 2.91580 2.95184 3.09916 3.65691 3.94341 3.98748 4.04107 4.13253 4.20706 4.28030 4.45636 4.50050 4.68087 4.71300 4.75214 4.83266 4.86859 4.88456 4.90112 5.01304 5.05378 5.07068 5.13708 5.18857 5.21323 5.28269 5.30454 5.32648 5.36956 5.45664 5.53887 5.58513 5.63687 5.71156 5.89164 6.04974 6.10562 6.44785 6.63699 6.90123 7.34733 7.47271 8.82292 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.008083 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.336817 B = 3463.407277 C = 5594.553305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.170 3.830 4 C -0.142 4.142 5 C -0.153 4.153 6 N -0.578 5.578 7 C 0.249 3.751 8 C -0.524 4.524 9 H 0.050 0.950 10 C 0.041 3.959 11 N -0.904 5.904 12 Si 0.917 3.083 13 H -0.264 1.264 14 H -0.289 1.289 15 H -0.285 1.285 16 C 0.562 3.438 17 O -0.568 6.568 18 C -0.148 4.148 19 C -0.028 4.028 20 C -0.066 4.066 21 C 0.281 3.719 22 N -0.472 5.472 23 C -0.038 4.038 24 C -0.121 4.121 25 C -0.016 4.016 26 C -0.113 4.113 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.263 0.737 41 H 0.129 0.871 42 H 0.165 0.835 43 H 0.182 0.818 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 -13.501 4.415 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.086 3.914 4 C -0.200 4.200 5 C -0.211 4.211 6 N -0.307 5.307 7 C 0.129 3.871 8 C -0.562 4.562 9 H 0.069 0.931 10 C -0.161 4.161 11 N -0.542 5.542 12 Si 0.744 3.256 13 H -0.189 1.189 14 H -0.215 1.215 15 H -0.212 1.212 16 C 0.351 3.649 17 O -0.450 6.450 18 C -0.151 4.151 19 C -0.049 4.049 20 C -0.069 4.069 21 C -0.033 4.033 22 N -0.148 5.148 23 C -0.058 4.058 24 C -0.139 4.139 25 C -0.017 4.017 26 C -0.169 4.169 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.183 0.817 43 H 0.199 0.801 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.954 -12.104 4.678 13.123 hybrid contribution 0.756 1.503 -0.542 1.767 sum -1.197 -10.602 4.136 11.443 Atomic orbital electron populations 1.21694 0.95445 1.01451 1.01348 1.21861 0.96505 0.94845 1.03087 1.20482 0.92942 0.92033 0.85940 1.22038 1.01597 1.00900 0.95430 1.22128 0.95032 1.01097 1.02801 1.48267 1.50889 1.26564 1.04980 1.19172 0.90476 0.80201 0.97293 1.21473 0.93155 0.91584 1.50026 0.93142 1.25256 0.95522 1.00116 0.95203 1.69945 1.11314 1.22902 1.50076 0.86235 0.79997 0.80618 0.78709 1.18903 1.21458 1.21155 1.18276 0.80710 0.82877 0.83085 1.90616 1.39749 1.29409 1.85244 1.19782 1.03330 0.93394 0.98550 1.21730 0.95540 0.93736 0.93916 1.16016 1.06143 0.84423 1.00345 1.25990 0.92257 0.93038 0.91983 1.81143 1.10310 1.12945 1.10386 1.21591 0.93271 0.94147 0.96792 1.21242 1.01102 0.93680 0.97846 1.20464 0.91831 0.97223 0.92227 1.20913 1.03991 0.89501 1.02541 0.92588 0.91566 0.94579 0.89694 0.91466 0.92882 0.90010 0.92514 0.92282 0.90270 0.94410 0.95307 0.95166 0.92814 0.85317 0.81727 0.80122 0.89539 0.88114 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.40 71.98 0.68 -3.17 16 2 C -0.12 -3.57 4.65 30.60 0.14 -3.43 16 3 C 0.17 5.71 0.72 3.60 0.00 5.72 16 4 C -0.14 -4.64 6.99 71.98 0.50 -4.14 16 5 C -0.15 -5.09 8.43 71.98 0.61 -4.48 16 6 N -0.58 -22.33 1.42 -782.43 -1.11 -23.45 16 7 C 0.25 11.12 4.08 85.63 0.35 11.47 16 8 C -0.52 -25.77 5.91 25.60 0.15 -25.62 16 9 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 10 C 0.04 2.11 5.46 84.66 0.46 2.57 16 11 N -0.90 -48.93 13.29 21.45 0.28 -48.65 16 12 Si 0.92 43.27 29.54 68.60 2.03 45.30 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 16 C 0.56 21.53 5.18 86.79 0.45 21.98 16 17 O -0.57 -22.44 12.29 -3.88 -0.05 -22.49 16 18 C -0.15 -5.24 4.70 -20.12 -0.09 -5.33 16 19 C -0.03 -1.08 7.40 22.80 0.17 -0.91 16 20 C -0.07 -2.20 5.73 -21.40 -0.12 -2.33 16 21 C 0.28 10.77 15.32 88.33 1.35 12.12 16 22 N -0.47 -19.92 18.54 19.00 0.35 -19.57 16 23 C -0.04 -0.89 9.75 22.59 0.22 -0.67 16 24 C -0.12 -2.49 9.68 22.19 0.21 -2.28 16 25 C -0.02 -0.43 5.92 -19.55 -0.12 -0.54 16 26 C -0.11 -2.53 9.21 71.24 0.66 -1.87 16 27 H 0.06 1.46 6.91 -2.39 -0.02 1.45 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.12 7.04 -2.39 -0.02 1.10 16 30 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.07 2.13 6.31 -2.38 -0.02 2.11 16 32 H 0.05 2.02 6.92 -2.39 -0.02 2.00 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.90 5.47 -2.39 -0.01 1.89 16 35 H 0.06 2.14 6.18 -2.38 -0.01 2.12 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.03 1.36 5.92 -2.39 -0.01 1.34 16 39 H 0.03 1.45 5.73 -2.38 -0.01 1.44 16 40 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.13 5.87 5.42 -2.91 -0.02 5.85 16 42 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 44 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.10 1.54 8.11 -2.39 -0.02 1.53 16 46 H 0.05 1.38 6.66 -2.39 -0.02 1.37 16 Total: -1.00 -61.78 366.67 8.12 -53.66 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.99 Total: 16.10 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.62 Total: -0.91 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -0.47 Total: -91.66 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -61.78 8.12 -53.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904678199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.332 kcal (2) G-P(sol) polarization free energy of solvation -61.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds