Wall clock time and date at job start Tue Mar 31 2020 12:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00284 * 2 1 4 4 H 1.09001 * 109.46793 * 0.02562 * 3 2 1 5 5 C 1.50693 * 109.47133 * 239.99896 * 3 2 1 6 6 O 1.21282 * 120.00280 * 240.00043 * 5 3 2 7 7 N 1.34779 * 120.00000 * 60.00138 * 5 3 2 8 8 C 1.46928 * 120.63059 * 359.71809 * 7 5 3 9 9 C 1.53621 * 108.54413 * 126.36738 * 8 7 5 10 10 C 1.53041 * 109.23860 * 54.85647 * 9 8 7 11 11 N 1.46509 * 109.44717 * 178.49632 * 10 9 8 12 12 C 1.36928 * 119.99979 * 275.06375 * 11 10 9 13 13 H 1.08001 * 120.00147 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00129 * 180.02562 * 12 11 10 15 15 N 1.31623 * 119.99976 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00507 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46668 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46845 * 119.99437 * 16 14 12 19 19 H 1.48496 * 109.47416 * 240.00036 * 16 14 12 20 20 C 1.53039 * 109.54147 * 298.50824 * 10 9 8 21 21 C 1.46928 * 120.63038 * 179.97438 * 7 5 3 22 22 C 1.50702 * 109.46878 * 119.99885 * 3 2 1 23 23 C 1.38234 * 119.99895 * 59.72875 * 22 3 2 24 24 C 1.38240 * 120.00061 * 180.34228 * 23 22 3 25 25 C 1.38234 * 119.99667 * 359.88520 * 24 23 22 26 26 C 1.38234 * 120.00244 * 0.09088 * 25 24 23 27 27 C 1.38230 * 119.99880 * 359.97438 * 26 25 24 28 28 H 1.08004 * 119.99977 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00970 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99527 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.58694 * 246.20580 * 8 7 5 32 32 H 1.09004 * 109.58510 * 6.62877 * 8 7 5 33 33 H 1.08999 * 109.63615 * 294.87019 * 9 8 7 34 34 H 1.08994 * 109.43079 * 174.72367 * 9 8 7 35 35 H 1.09002 * 109.46190 * 58.53315 * 10 9 8 36 36 H 0.96998 * 119.99437 * 95.06412 * 11 10 9 37 37 H 0.96991 * 120.00378 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.49948 * 301.41632 * 20 10 9 39 39 H 1.09000 * 109.52474 * 181.33205 * 20 10 9 40 40 H 1.08992 * 109.58573 * 353.37149 * 21 7 5 41 41 H 1.09001 * 109.58535 * 113.65574 * 21 7 5 42 42 H 1.08001 * 120.00279 * 0.27436 * 23 22 3 43 43 H 1.07996 * 119.99812 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.99733 * 180.10835 * 25 24 23 45 45 H 1.08001 * 119.99769 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.00376 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9299 1.3848 -1.2304 6 8 4.1325 1.4956 -1.1191 7 7 2.3683 1.3331 -2.4545 8 6 0.9135 1.1930 -2.6055 9 6 0.4052 2.3240 -3.5123 10 6 1.1791 2.2983 -4.8323 11 7 0.6732 3.3527 -5.7149 12 6 -0.4223 3.1193 -6.5024 13 1 -0.9133 2.1577 -6.4734 14 6 -0.9013 4.1181 -7.3390 15 7 -0.3027 5.2898 -7.3748 16 14 -2.3954 3.7994 -8.4140 17 1 -2.8805 2.4140 -8.1892 18 1 -3.4707 4.7625 -8.0650 19 1 -2.0234 3.9687 -9.8416 20 6 2.6664 2.5328 -4.5584 21 6 3.1998 1.4103 -3.6634 22 6 2.9299 1.3848 1.2305 23 6 3.9052 0.4306 1.4521 24 6 4.6952 0.4997 2.5844 25 6 4.5114 1.5244 3.4939 26 6 3.5364 2.4789 3.2720 27 6 2.7455 2.4090 2.1405 28 1 -0.5400 0.9353 0.0004 29 1 -0.5402 -0.9353 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 0.6843 0.2277 -3.0571 32 1 0.4363 1.2639 -1.6280 33 1 0.5573 3.2845 -3.0200 34 1 -0.6569 2.1803 -3.7104 35 1 1.0466 1.3286 -5.3122 36 1 1.1144 4.2162 -5.7412 37 1 -0.6375 5.9878 -7.9591 38 1 2.7972 3.4913 -4.0563 39 1 3.2140 2.5380 -5.5009 40 1 4.2313 1.6247 -3.3843 41 1 3.1556 0.4616 -4.1984 42 1 4.0493 -0.3695 0.7412 43 1 5.4575 -0.2455 2.7573 44 1 5.1298 1.5794 4.3776 45 1 3.3931 3.2797 3.9824 46 1 1.9840 3.1549 1.9669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997348539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:29 Heat of formation + Delta-G solvation = 25.954048 kcal Electronic energy + Delta-G solvation = -26084.373638 eV Core-core repulsion = 22553.609510 eV Total energy + Delta-G solvation = -3530.764127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66136 -39.02733 -37.29054 -35.59258 -34.38565 -31.99975 -31.40641 -30.97465 -30.69051 -29.31716 -27.34875 -24.74275 -23.00955 -22.85435 -22.74841 -21.67756 -20.86064 -19.79325 -18.76655 -17.46702 -17.06774 -16.87162 -15.88513 -15.47924 -15.32367 -14.85501 -14.69992 -14.41902 -13.85579 -13.76826 -13.62962 -13.53315 -13.44795 -13.24706 -12.91287 -12.73010 -12.43927 -12.31205 -11.92280 -11.65653 -11.46240 -11.22198 -11.03590 -10.96743 -10.88187 -10.83834 -10.49911 -10.22451 -10.18139 -9.83930 -9.69933 -9.25593 -8.97424 -8.89728 -8.82280 -8.46917 -6.99851 -5.79970 -3.09218 1.20583 1.33897 1.95305 2.69253 3.09431 3.40248 3.45707 3.48194 3.72445 4.43989 4.54264 4.55470 4.74112 4.74759 4.90209 4.90548 5.01466 5.12004 5.24641 5.33584 5.34218 5.40297 5.43570 5.50465 5.52803 5.64417 5.66773 5.71381 5.84238 5.94037 5.95145 6.01561 6.22072 6.27523 6.31963 6.34852 6.36813 6.40155 6.41046 6.50372 6.51530 6.63081 6.88649 6.89485 7.02424 7.53011 7.66388 8.24418 8.38248 9.49502 10.07199 10.41887 11.42671 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.002781 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.915985 B =10064.920124 C =10285.561053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.145 4.145 3 C -0.041 4.041 4 H 0.107 0.893 5 C 0.523 3.477 6 O -0.539 6.539 7 N -0.600 5.600 8 C 0.096 3.904 9 C -0.151 4.151 10 C 0.179 3.821 11 N -0.725 5.725 12 C -0.239 4.239 13 H 0.071 0.929 14 C -0.014 4.014 15 N -0.932 5.932 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.139 4.139 21 C 0.115 3.885 22 C -0.059 4.059 23 C -0.082 4.082 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.111 4.111 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -11.066 20.404 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.062 4.062 4 H 0.125 0.875 5 C 0.310 3.690 6 O -0.416 6.416 7 N -0.333 5.333 8 C -0.026 4.026 9 C -0.193 4.193 10 C 0.069 3.931 11 N -0.365 5.365 12 C -0.370 4.370 13 H 0.089 0.911 14 C -0.210 4.210 15 N -0.580 5.580 16 Si 0.737 3.263 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.178 4.178 21 C -0.007 4.007 22 C -0.060 4.060 23 C -0.100 4.100 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.129 4.129 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.010 -11.066 20.317 23.903 hybrid contribution -0.850 0.304 -0.751 1.174 sum 5.160 -10.762 19.566 22.919 Atomic orbital electron populations 1.23957 0.95445 1.02665 0.99108 1.22583 0.95800 0.96670 1.01235 1.19485 0.96822 0.98428 0.91463 0.87520 1.20206 0.88333 0.76345 0.84100 1.90693 1.14815 1.49927 1.86196 1.48128 1.08241 1.71556 1.05372 1.22326 0.79095 0.99753 1.01474 1.22760 1.01537 0.97098 0.97856 1.20162 0.90008 0.93405 0.89530 1.42451 1.34278 1.12804 1.46954 1.19269 1.04239 0.97870 1.15595 0.91130 1.24756 0.99649 0.96088 1.00502 1.69671 1.42234 1.03920 1.42215 0.86140 0.82574 0.77257 0.80350 1.20554 1.21894 1.21875 1.22193 0.98068 0.98185 0.99306 1.21610 0.95484 0.98969 0.84648 1.19209 0.96571 0.95773 0.94407 1.20888 0.94395 0.98339 0.96397 1.21100 0.99582 0.98784 0.94682 1.21122 0.98323 0.95125 0.99405 1.21057 0.96332 0.99135 0.97633 1.21011 0.99873 0.97615 0.94412 0.87812 0.87475 0.86645 0.91541 0.89493 0.92279 0.90710 0.93466 0.78279 0.93537 0.91881 0.90590 0.89430 0.91646 0.86411 0.86223 0.86323 0.86131 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 12.37 29.02 0.36 -1.02 16 2 C -0.14 -1.35 7.18 -36.02 -0.26 -1.61 16 3 C -0.04 -0.46 1.94 -94.08 -0.18 -0.64 16 4 H 0.11 1.11 7.08 -51.93 -0.37 0.74 16 5 C 0.52 7.48 6.96 -10.99 -0.08 7.40 16 6 O -0.54 -9.34 14.54 5.56 0.08 -9.26 16 7 N -0.60 -8.35 2.97 -172.53 -0.51 -8.86 16 8 C 0.10 1.23 5.48 -3.49 -0.02 1.21 16 9 C -0.15 -2.48 5.67 -26.39 -0.15 -2.63 16 10 C 0.18 3.39 2.73 -67.88 -0.19 3.20 16 11 N -0.72 -17.65 5.12 -53.38 -0.27 -17.93 16 12 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 13 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 15 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 16 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C -0.14 -2.30 5.55 -26.63 -0.15 -2.44 16 21 C 0.12 1.67 6.43 -3.73 -0.02 1.65 16 22 C -0.06 -0.70 4.38 -104.62 -0.46 -1.16 16 23 C -0.08 -0.96 8.04 -39.58 -0.32 -1.28 16 24 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 26 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 27 C -0.11 -1.20 9.67 -39.59 -0.38 -1.59 16 28 H 0.10 0.77 7.32 -52.48 -0.38 0.38 16 29 H 0.11 0.70 8.06 -52.48 -0.42 0.28 16 30 H 0.12 1.03 8.01 -52.48 -0.42 0.61 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.94 3.07 -51.93 -0.16 0.78 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.38 10.09 7.80 -40.82 -0.32 9.78 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.12 1.36 7.95 -52.49 -0.42 0.94 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.12 1.11 7.95 -52.49 -0.42 0.69 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -31.94 370.02 -9.75 -41.69 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.04 Total: 9.79 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.28 Total: -10.83 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.06 Total: -53.93 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.94 -9.75 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997348539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.642 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds