Wall clock time and date at job start Tue Mar 31 2020 12:01:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30993 * 1
3 3 C 1.50700 * 120.00284 * 2 1
4 4 H 1.09001 * 109.46793 * 0.02562 * 3 2 1
5 5 C 1.50693 * 109.47133 * 239.99896 * 3 2 1
6 6 O 1.21282 * 120.00280 * 240.00043 * 5 3 2
7 7 N 1.34779 * 120.00000 * 60.00138 * 5 3 2
8 8 C 1.46928 * 120.63059 * 359.71809 * 7 5 3
9 9 C 1.53621 * 108.54413 * 126.36738 * 8 7 5
10 10 C 1.53041 * 109.23860 * 54.85647 * 9 8 7
11 11 N 1.46509 * 109.44717 * 178.49632 * 10 9 8
12 12 C 1.36928 * 119.99979 * 275.06375 * 11 10 9
13 13 H 1.08001 * 120.00147 * 359.97438 * 12 11 10
14 14 C 1.38812 * 120.00129 * 180.02562 * 12 11 10
15 15 N 1.31623 * 119.99976 * 359.97438 * 14 12 11
16 16 Si 1.86804 * 120.00507 * 179.97438 * 14 12 11
17 17 H 1.48502 * 109.46668 * 0.02562 * 16 14 12
18 18 H 1.48501 * 109.46845 * 119.99437 * 16 14 12
19 19 H 1.48496 * 109.47416 * 240.00036 * 16 14 12
20 20 C 1.53039 * 109.54147 * 298.50824 * 10 9 8
21 21 C 1.46928 * 120.63038 * 179.97438 * 7 5 3
22 22 C 1.50702 * 109.46878 * 119.99885 * 3 2 1
23 23 C 1.38234 * 119.99895 * 59.72875 * 22 3 2
24 24 C 1.38240 * 120.00061 * 180.34228 * 23 22 3
25 25 C 1.38234 * 119.99667 * 359.88520 * 24 23 22
26 26 C 1.38234 * 120.00244 * 0.09088 * 25 24 23
27 27 C 1.38230 * 119.99880 * 359.97438 * 26 25 24
28 28 H 1.08004 * 119.99977 * 359.97438 * 1 2 3
29 29 H 1.08004 * 120.00970 * 180.02562 * 1 2 3
30 30 H 1.08006 * 119.99527 * 180.02562 * 2 1 3
31 31 H 1.09001 * 109.58694 * 246.20580 * 8 7 5
32 32 H 1.09004 * 109.58510 * 6.62877 * 8 7 5
33 33 H 1.08999 * 109.63615 * 294.87019 * 9 8 7
34 34 H 1.08994 * 109.43079 * 174.72367 * 9 8 7
35 35 H 1.09002 * 109.46190 * 58.53315 * 10 9 8
36 36 H 0.96998 * 119.99437 * 95.06412 * 11 10 9
37 37 H 0.96991 * 120.00378 * 180.02562 * 15 14 12
38 38 H 1.08998 * 109.49948 * 301.41632 * 20 10 9
39 39 H 1.09000 * 109.52474 * 181.33205 * 20 10 9
40 40 H 1.08992 * 109.58573 * 353.37149 * 21 7 5
41 41 H 1.09001 * 109.58535 * 113.65574 * 21 7 5
42 42 H 1.08001 * 120.00279 * 0.27436 * 23 22 3
43 43 H 1.07996 * 119.99812 * 180.02562 * 24 23 22
44 44 H 1.07999 * 119.99733 * 180.10835 * 25 24 23
45 45 H 1.08001 * 119.99769 * 180.02562 * 26 25 24
46 46 H 1.08000 * 120.00376 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 1 1.3552 2.1336 0.0005
5 6 2.9299 1.3848 -1.2304
6 8 4.1325 1.4956 -1.1191
7 7 2.3683 1.3331 -2.4545
8 6 0.9135 1.1930 -2.6055
9 6 0.4052 2.3240 -3.5123
10 6 1.1791 2.2983 -4.8323
11 7 0.6732 3.3527 -5.7149
12 6 -0.4223 3.1193 -6.5024
13 1 -0.9133 2.1577 -6.4734
14 6 -0.9013 4.1181 -7.3390
15 7 -0.3027 5.2898 -7.3748
16 14 -2.3954 3.7994 -8.4140
17 1 -2.8805 2.4140 -8.1892
18 1 -3.4707 4.7625 -8.0650
19 1 -2.0234 3.9687 -9.8416
20 6 2.6664 2.5328 -4.5584
21 6 3.1998 1.4103 -3.6634
22 6 2.9299 1.3848 1.2305
23 6 3.9052 0.4306 1.4521
24 6 4.6952 0.4997 2.5844
25 6 4.5114 1.5244 3.4939
26 6 3.5364 2.4789 3.2720
27 6 2.7455 2.4090 2.1405
28 1 -0.5400 0.9353 0.0004
29 1 -0.5402 -0.9353 0.0004
30 1 1.8499 -0.9354 -0.0004
31 1 0.6843 0.2277 -3.0571
32 1 0.4363 1.2639 -1.6280
33 1 0.5573 3.2845 -3.0200
34 1 -0.6569 2.1803 -3.7104
35 1 1.0466 1.3286 -5.3122
36 1 1.1144 4.2162 -5.7412
37 1 -0.6375 5.9878 -7.9591
38 1 2.7972 3.4913 -4.0563
39 1 3.2140 2.5380 -5.5009
40 1 4.2313 1.6247 -3.3843
41 1 3.1556 0.4616 -4.1984
42 1 4.0493 -0.3695 0.7412
43 1 5.4575 -0.2455 2.7573
44 1 5.1298 1.5794 4.3776
45 1 3.3931 3.2797 3.9824
46 1 1.9840 3.1549 1.9669
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000997348539.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:01:29
Heat of formation + Delta-G solvation = 25.954048 kcal
Electronic energy + Delta-G solvation = -26084.373638 eV
Core-core repulsion = 22553.609510 eV
Total energy + Delta-G solvation = -3530.764127 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.66136 -39.02733 -37.29054 -35.59258 -34.38565 -31.99975 -31.40641 -30.97465
-30.69051 -29.31716 -27.34875 -24.74275 -23.00955 -22.85435 -22.74841 -21.67756
-20.86064 -19.79325 -18.76655 -17.46702 -17.06774 -16.87162 -15.88513 -15.47924
-15.32367 -14.85501 -14.69992 -14.41902 -13.85579 -13.76826 -13.62962 -13.53315
-13.44795 -13.24706 -12.91287 -12.73010 -12.43927 -12.31205 -11.92280 -11.65653
-11.46240 -11.22198 -11.03590 -10.96743 -10.88187 -10.83834 -10.49911 -10.22451
-10.18139 -9.83930 -9.69933 -9.25593 -8.97424 -8.89728 -8.82280 -8.46917
-6.99851 -5.79970 -3.09218 1.20583 1.33897 1.95305 2.69253 3.09431
3.40248 3.45707 3.48194 3.72445 4.43989 4.54264 4.55470 4.74112
4.74759 4.90209 4.90548 5.01466 5.12004 5.24641 5.33584 5.34218
5.40297 5.43570 5.50465 5.52803 5.64417 5.66773 5.71381 5.84238
5.94037 5.95145 6.01561 6.22072 6.27523 6.31963 6.34852 6.36813
6.40155 6.41046 6.50372 6.51530 6.63081 6.88649 6.89485 7.02424
7.53011 7.66388 8.24418 8.38248 9.49502 10.07199 10.41887 11.42671
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.025312 B = 0.002781 C = 0.002722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1105.915985 B =10064.920124 C =10285.561053
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.145 4.145
3 C -0.041 4.041
4 H 0.107 0.893
5 C 0.523 3.477
6 O -0.539 6.539
7 N -0.600 5.600
8 C 0.096 3.904
9 C -0.151 4.151
10 C 0.179 3.821
11 N -0.725 5.725
12 C -0.239 4.239
13 H 0.071 0.929
14 C -0.014 4.014
15 N -0.932 5.932
16 Si 0.906 3.094
17 H -0.280 1.280
18 H -0.292 1.292
19 H -0.292 1.292
20 C -0.139 4.139
21 C 0.115 3.885
22 C -0.059 4.059
23 C -0.082 4.082
24 C -0.123 4.123
25 C -0.122 4.122
26 C -0.124 4.124
27 C -0.111 4.111
28 H 0.104 0.896
29 H 0.107 0.893
30 H 0.116 0.884
31 H 0.066 0.934
32 H 0.087 0.913
33 H 0.058 0.942
34 H 0.074 0.926
35 H 0.047 0.953
36 H 0.384 0.616
37 H 0.255 0.745
38 H 0.062 0.938
39 H 0.076 0.924
40 H 0.087 0.913
41 H 0.065 0.935
42 H 0.118 0.882
43 H 0.120 0.880
44 H 0.119 0.881
45 H 0.121 0.879
46 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.519 -11.066 20.404 23.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.163 4.163
3 C -0.062 4.062
4 H 0.125 0.875
5 C 0.310 3.690
6 O -0.416 6.416
7 N -0.333 5.333
8 C -0.026 4.026
9 C -0.193 4.193
10 C 0.069 3.931
11 N -0.365 5.365
12 C -0.370 4.370
13 H 0.089 0.911
14 C -0.210 4.210
15 N -0.580 5.580
16 Si 0.737 3.263
17 H -0.206 1.206
18 H -0.219 1.219
19 H -0.219 1.219
20 C -0.178 4.178
21 C -0.007 4.007
22 C -0.060 4.060
23 C -0.100 4.100
24 C -0.141 4.141
25 C -0.140 4.140
26 C -0.142 4.142
27 C -0.129 4.129
28 H 0.122 0.878
29 H 0.125 0.875
30 H 0.134 0.866
31 H 0.085 0.915
32 H 0.105 0.895
33 H 0.077 0.923
34 H 0.093 0.907
35 H 0.065 0.935
36 H 0.217 0.783
37 H 0.065 0.935
38 H 0.081 0.919
39 H 0.094 0.906
40 H 0.106 0.894
41 H 0.084 0.916
42 H 0.136 0.864
43 H 0.138 0.862
44 H 0.137 0.863
45 H 0.139 0.861
46 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 6.010 -11.066 20.317 23.903
hybrid contribution -0.850 0.304 -0.751 1.174
sum 5.160 -10.762 19.566 22.919
Atomic orbital electron populations
1.23957 0.95445 1.02665 0.99108 1.22583 0.95800 0.96670 1.01235
1.19485 0.96822 0.98428 0.91463 0.87520 1.20206 0.88333 0.76345
0.84100 1.90693 1.14815 1.49927 1.86196 1.48128 1.08241 1.71556
1.05372 1.22326 0.79095 0.99753 1.01474 1.22760 1.01537 0.97098
0.97856 1.20162 0.90008 0.93405 0.89530 1.42451 1.34278 1.12804
1.46954 1.19269 1.04239 0.97870 1.15595 0.91130 1.24756 0.99649
0.96088 1.00502 1.69671 1.42234 1.03920 1.42215 0.86140 0.82574
0.77257 0.80350 1.20554 1.21894 1.21875 1.22193 0.98068 0.98185
0.99306 1.21610 0.95484 0.98969 0.84648 1.19209 0.96571 0.95773
0.94407 1.20888 0.94395 0.98339 0.96397 1.21100 0.99582 0.98784
0.94682 1.21122 0.98323 0.95125 0.99405 1.21057 0.96332 0.99135
0.97633 1.21011 0.99873 0.97615 0.94412 0.87812 0.87475 0.86645
0.91541 0.89493 0.92279 0.90710 0.93466 0.78279 0.93537 0.91881
0.90590 0.89430 0.91646 0.86411 0.86223 0.86323 0.86131 0.86125
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.38 12.37 29.02 0.36 -1.02 16
2 C -0.14 -1.35 7.18 -36.02 -0.26 -1.61 16
3 C -0.04 -0.46 1.94 -94.08 -0.18 -0.64 16
4 H 0.11 1.11 7.08 -51.93 -0.37 0.74 16
5 C 0.52 7.48 6.96 -10.99 -0.08 7.40 16
6 O -0.54 -9.34 14.54 5.56 0.08 -9.26 16
7 N -0.60 -8.35 2.97 -172.53 -0.51 -8.86 16
8 C 0.10 1.23 5.48 -3.49 -0.02 1.21 16
9 C -0.15 -2.48 5.67 -26.39 -0.15 -2.63 16
10 C 0.18 3.39 2.73 -67.88 -0.19 3.20 16
11 N -0.72 -17.65 5.12 -53.38 -0.27 -17.93 16
12 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16
13 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16
15 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16
16 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16
17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
20 C -0.14 -2.30 5.55 -26.63 -0.15 -2.44 16
21 C 0.12 1.67 6.43 -3.73 -0.02 1.65 16
22 C -0.06 -0.70 4.38 -104.62 -0.46 -1.16 16
23 C -0.08 -0.96 8.04 -39.58 -0.32 -1.28 16
24 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16
25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16
26 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16
27 C -0.11 -1.20 9.67 -39.59 -0.38 -1.59 16
28 H 0.10 0.77 7.32 -52.48 -0.38 0.38 16
29 H 0.11 0.70 8.06 -52.48 -0.42 0.28 16
30 H 0.12 1.03 8.01 -52.48 -0.42 0.61 16
31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
32 H 0.09 0.94 3.07 -51.93 -0.16 0.78 16
33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16
35 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16
36 H 0.38 10.09 7.80 -40.82 -0.32 9.78 16
37 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16
38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
40 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16
41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
42 H 0.12 1.36 7.95 -52.49 -0.42 0.94 16
43 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16
44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16
46 H 0.12 1.11 7.95 -52.49 -0.42 0.69 16
LS Contribution 370.02 15.07 5.58 5.58
Total: -1.00 -31.94 370.02 -9.75 -41.69
By element:
Atomic # 1 Polarization: 16.83 SS G_CDS: -7.04 Total: 9.79 kcal
Atomic # 6 Polarization: -7.54 SS G_CDS: -3.28 Total: -10.83 kcal
Atomic # 7 Polarization: -53.87 SS G_CDS: -0.06 Total: -53.93 kcal
Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal
Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -31.94 -9.75 -41.69 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997348539.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.642 kcal
(2) G-P(sol) polarization free energy of solvation -31.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.706 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds