Wall clock time and date at job start Tue Mar 31 2020 12:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00284 * 2 1 4 4 H 1.09001 * 109.46793 * 0.02562 * 3 2 1 5 5 C 1.50693 * 109.47133 * 239.99896 * 3 2 1 6 6 O 1.21282 * 120.00280 * 240.00043 * 5 3 2 7 7 N 1.34779 * 120.00000 * 60.00138 * 5 3 2 8 8 C 1.46928 * 120.63059 * 359.71809 * 7 5 3 9 9 C 1.53621 * 108.54413 * 126.36738 * 8 7 5 10 10 C 1.53041 * 109.23860 * 54.85647 * 9 8 7 11 11 N 1.46509 * 109.44717 * 178.49632 * 10 9 8 12 12 C 1.36928 * 119.99979 * 275.06375 * 11 10 9 13 13 H 1.08001 * 120.00147 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00129 * 180.02562 * 12 11 10 15 15 N 1.31623 * 119.99976 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00507 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46668 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46845 * 119.99437 * 16 14 12 19 19 H 1.48496 * 109.47416 * 240.00036 * 16 14 12 20 20 C 1.53039 * 109.54147 * 298.50824 * 10 9 8 21 21 C 1.46928 * 120.63038 * 179.97438 * 7 5 3 22 22 C 1.50702 * 109.46878 * 119.99885 * 3 2 1 23 23 C 1.38234 * 119.99895 * 59.72875 * 22 3 2 24 24 C 1.38240 * 120.00061 * 180.34228 * 23 22 3 25 25 C 1.38234 * 119.99667 * 359.88520 * 24 23 22 26 26 C 1.38234 * 120.00244 * 0.09088 * 25 24 23 27 27 C 1.38230 * 119.99880 * 359.97438 * 26 25 24 28 28 H 1.08004 * 119.99977 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00970 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99527 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.58694 * 246.20580 * 8 7 5 32 32 H 1.09004 * 109.58510 * 6.62877 * 8 7 5 33 33 H 1.08999 * 109.63615 * 294.87019 * 9 8 7 34 34 H 1.08994 * 109.43079 * 174.72367 * 9 8 7 35 35 H 1.09002 * 109.46190 * 58.53315 * 10 9 8 36 36 H 0.96998 * 119.99437 * 95.06412 * 11 10 9 37 37 H 0.96991 * 120.00378 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.49948 * 301.41632 * 20 10 9 39 39 H 1.09000 * 109.52474 * 181.33205 * 20 10 9 40 40 H 1.08992 * 109.58573 * 353.37149 * 21 7 5 41 41 H 1.09001 * 109.58535 * 113.65574 * 21 7 5 42 42 H 1.08001 * 120.00279 * 0.27436 * 23 22 3 43 43 H 1.07996 * 119.99812 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.99733 * 180.10835 * 25 24 23 45 45 H 1.08001 * 119.99769 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.00376 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9299 1.3848 -1.2304 6 8 4.1325 1.4956 -1.1191 7 7 2.3683 1.3331 -2.4545 8 6 0.9135 1.1930 -2.6055 9 6 0.4052 2.3240 -3.5123 10 6 1.1791 2.2983 -4.8323 11 7 0.6732 3.3527 -5.7149 12 6 -0.4223 3.1193 -6.5024 13 1 -0.9133 2.1577 -6.4734 14 6 -0.9013 4.1181 -7.3390 15 7 -0.3027 5.2898 -7.3748 16 14 -2.3954 3.7994 -8.4140 17 1 -2.8805 2.4140 -8.1892 18 1 -3.4707 4.7625 -8.0650 19 1 -2.0234 3.9687 -9.8416 20 6 2.6664 2.5328 -4.5584 21 6 3.1998 1.4103 -3.6634 22 6 2.9299 1.3848 1.2305 23 6 3.9052 0.4306 1.4521 24 6 4.6952 0.4997 2.5844 25 6 4.5114 1.5244 3.4939 26 6 3.5364 2.4789 3.2720 27 6 2.7455 2.4090 2.1405 28 1 -0.5400 0.9353 0.0004 29 1 -0.5402 -0.9353 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 0.6843 0.2277 -3.0571 32 1 0.4363 1.2639 -1.6280 33 1 0.5573 3.2845 -3.0200 34 1 -0.6569 2.1803 -3.7104 35 1 1.0466 1.3286 -5.3122 36 1 1.1144 4.2162 -5.7412 37 1 -0.6375 5.9878 -7.9591 38 1 2.7972 3.4913 -4.0563 39 1 3.2140 2.5380 -5.5009 40 1 4.2313 1.6247 -3.3843 41 1 3.1556 0.4616 -4.1984 42 1 4.0493 -0.3695 0.7412 43 1 5.4575 -0.2455 2.7573 44 1 5.1298 1.5794 4.3776 45 1 3.3931 3.2797 3.9824 46 1 1.9840 3.1549 1.9669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997348539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:28 Heat of formation + Delta-G solvation = 8.406537 kcal Electronic energy + Delta-G solvation = -26085.134555 eV Core-core repulsion = 22553.609510 eV Total energy + Delta-G solvation = -3531.525045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.70037 -39.95003 -38.60514 -36.53307 -35.94183 -33.73911 -32.21349 -31.90264 -31.72800 -31.01314 -28.31503 -26.37848 -24.37324 -24.21777 -23.59229 -22.60751 -21.90481 -20.91911 -19.87796 -19.05972 -18.42073 -17.73834 -16.97534 -16.69802 -16.41786 -16.13446 -15.69572 -15.48602 -15.40097 -15.26625 -14.91430 -14.70119 -14.44786 -14.20414 -14.01830 -13.77189 -13.47165 -13.30020 -13.24121 -13.05528 -12.86721 -12.66251 -12.34192 -12.13960 -12.09236 -12.00066 -11.95860 -11.77336 -11.68741 -11.31091 -11.17970 -10.92860 -10.06891 -9.76128 -9.66142 -9.60344 -8.99772 -7.92690 -5.21499 0.42253 0.55559 1.26250 1.48851 1.49218 1.59100 1.62040 2.01396 2.57321 2.92718 3.40737 3.53066 3.71814 3.81749 3.83978 3.96453 4.01112 4.10962 4.18950 4.20038 4.20282 4.30639 4.35996 4.40793 4.52554 4.63392 4.66491 4.78016 4.79002 4.82610 4.86632 5.02194 5.03903 5.06663 5.11600 5.18555 5.30296 5.49415 5.54598 5.57741 5.62018 5.64106 5.65128 5.66850 5.75446 6.14140 6.28946 6.41851 7.13033 7.34904 8.10509 8.33632 9.31287 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025312 B = 0.002781 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.915985 B =10064.920124 C =10285.561053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.161 4.161 3 C -0.034 4.034 4 H 0.116 0.884 5 C 0.520 3.480 6 O -0.574 6.574 7 N -0.602 5.602 8 C 0.107 3.893 9 C -0.141 4.141 10 C 0.174 3.826 11 N -0.739 5.739 12 C -0.231 4.231 13 H 0.080 0.920 14 C -0.080 4.080 15 N -0.973 5.973 16 Si 0.971 3.029 17 H -0.262 1.262 18 H -0.296 1.296 19 H -0.297 1.297 20 C -0.127 4.127 21 C 0.122 3.878 22 C -0.076 4.076 23 C -0.101 4.101 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.129 4.129 27 C -0.126 4.126 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.369 0.631 37 H 0.249 0.751 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -12.745 21.997 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C -0.055 4.055 4 H 0.134 0.866 5 C 0.309 3.691 6 O -0.453 6.453 7 N -0.334 5.334 8 C -0.015 4.015 9 C -0.182 4.182 10 C 0.065 3.935 11 N -0.378 5.378 12 C -0.363 4.363 13 H 0.098 0.902 14 C -0.272 4.272 15 N -0.624 5.624 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.223 1.223 19 H -0.225 1.225 20 C -0.167 4.167 21 C -0.001 4.001 22 C -0.077 4.077 23 C -0.119 4.119 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.147 4.147 27 C -0.144 4.144 28 H 0.130 0.870 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.974 -12.806 21.944 25.890 hybrid contribution -0.467 0.795 -1.169 1.488 sum 4.507 -12.012 20.775 24.417 Atomic orbital electron populations 1.24189 0.94850 1.03926 0.96559 1.22497 0.96238 0.95699 1.03465 1.19458 0.96447 0.99899 0.89661 0.86647 1.20792 0.88270 0.75184 0.84834 1.90672 1.16531 1.51407 1.86719 1.48191 1.08606 1.71358 1.05210 1.22344 0.78343 0.98796 1.02018 1.22549 1.00743 0.98041 0.96886 1.20413 0.91432 0.91790 0.89827 1.42687 1.33869 1.13386 1.47852 1.19667 1.04178 0.97811 1.14674 0.90183 1.25562 1.02827 0.96157 1.02626 1.69833 1.44133 1.04898 1.43568 0.85105 0.79121 0.77748 0.78009 1.18625 1.22330 1.22494 1.22047 0.96664 0.98436 0.99507 1.21500 0.95161 0.98741 0.84710 1.19381 0.97063 0.96301 0.94947 1.20983 0.95235 0.98615 0.97035 1.21387 0.99742 0.99547 0.94450 1.21470 0.98390 0.94563 0.99975 1.21407 0.95897 0.99690 0.97686 1.21278 1.00609 0.97712 0.94780 0.87049 0.85658 0.86582 0.89806 0.87032 0.93668 0.91366 0.93245 0.79927 0.94218 0.93369 0.91047 0.90036 0.89824 0.87117 0.84610 0.83882 0.83901 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 12.37 67.79 0.84 -1.14 16 2 C -0.16 -2.65 7.18 25.65 0.18 -2.47 16 3 C -0.03 -0.71 1.94 -13.03 -0.03 -0.74 16 4 H 0.12 2.19 7.08 -2.39 -0.02 2.17 16 5 C 0.52 14.46 6.96 87.65 0.61 15.07 16 6 O -0.57 -19.93 14.54 -3.03 -0.04 -19.97 16 7 N -0.60 -15.92 2.97 -818.14 -2.43 -18.35 16 8 C 0.11 2.49 5.48 86.51 0.47 2.96 16 9 C -0.14 -4.47 5.67 30.82 0.17 -4.29 16 10 C 0.17 6.46 2.73 45.02 0.12 6.59 16 11 N -0.74 -36.30 5.12 -322.80 -1.65 -37.95 16 12 C -0.23 -12.41 9.93 84.03 0.83 -11.57 16 13 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 14 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 15 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 16 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 20 C -0.13 -4.23 5.55 30.66 0.17 -4.06 16 21 C 0.12 3.42 6.43 86.35 0.55 3.97 16 22 C -0.08 -1.75 4.38 -19.87 -0.09 -1.83 16 23 C -0.10 -2.32 8.04 22.27 0.18 -2.14 16 24 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 25 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 26 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 27 C -0.13 -2.57 9.67 22.27 0.22 -2.35 16 28 H 0.11 1.24 7.32 -2.91 -0.02 1.22 16 29 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.12 1.89 8.01 -2.91 -0.02 1.87 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 2.07 3.07 -2.38 -0.01 2.06 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 36 H 0.37 19.99 7.80 -92.71 -0.72 19.27 16 37 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.08 2.43 7.00 -2.39 -0.02 2.42 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.11 2.59 7.95 -2.91 -0.02 2.57 16 43 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 45 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.13 2.24 7.95 -2.91 -0.02 2.22 16 Total: -1.00 -69.56 370.02 3.81 -65.75 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.24 Total: 34.85 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.38 Total: -12.52 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -3.80 Total: -115.44 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.04 Total: -19.97 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.56 3.81 -65.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997348539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.154 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds