Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 C 1.53001 * 109.47329 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47194 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99920 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47051 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.64055 * 54.29895 * 7 6 5 9 9 C 1.54321 * 110.72129 * 291.15569 * 7 6 5 10 10 N 1.47019 * 107.27531 * 219.26706 * 9 7 6 11 11 C 1.34778 * 125.65277 * 178.97403 * 10 9 7 12 12 O 1.21279 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00123 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.46867 * 180.02562 * 13 11 10 15 15 C 1.76202 * 99.99872 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99807 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00229 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00023 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46955 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46775 * 120.00449 * 19 17 15 22 22 H 1.48498 * 109.47046 * 240.00311 * 19 17 15 23 23 C 1.47431 * 108.70142 * 358.94050 * 10 9 7 24 24 C 1.55157 * 110.71845 * 177.44165 * 7 6 5 25 25 H 1.09001 * 111.00741 * 35.97146 * 24 7 6 26 26 C 1.53000 * 111.00230 * 272.11400 * 24 7 6 27 27 H 1.09000 * 109.46975 * 300.00198 * 1 2 3 28 28 H 1.09001 * 109.46953 * 59.99749 * 1 2 3 29 29 H 1.09002 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47427 * 239.99523 * 2 1 3 31 31 H 1.09001 * 109.46953 * 120.00251 * 2 1 3 32 32 H 1.09000 * 109.47158 * 59.99915 * 3 2 1 33 33 H 1.09003 * 109.46971 * 299.99616 * 3 2 1 34 34 H 1.08999 * 109.47052 * 59.99229 * 4 3 2 35 35 H 1.09003 * 109.46535 * 299.99582 * 4 3 2 36 36 H 1.00902 * 111.00177 * 56.04435 * 5 4 3 37 37 H 1.09003 * 109.47346 * 60.00099 * 6 5 4 38 38 H 1.09004 * 109.47235 * 299.99912 * 6 5 4 39 39 H 1.09001 * 109.88480 * 338.68818 * 9 7 6 40 40 H 1.09004 * 109.87910 * 99.84742 * 9 7 6 41 41 H 1.08998 * 109.47078 * 300.00341 * 13 11 10 42 42 H 1.08989 * 109.46870 * 60.00231 * 13 11 10 43 43 H 0.96995 * 120.00475 * 179.97438 * 18 17 15 44 44 H 1.08999 * 110.36190 * 142.96411 * 23 10 9 45 45 H 1.08998 * 110.36491 * 265.18090 * 23 10 9 46 46 H 1.08998 * 109.47366 * 60.00704 * 26 24 7 47 47 H 1.09006 * 109.46883 * 179.97438 * 26 24 7 48 48 H 1.08999 * 109.47315 * 299.99847 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8273 -0.0013 6 6 5.5283 2.8664 -0.0013 7 6 5.9997 4.3220 -0.0026 8 1 5.5518 4.8717 0.8253 9 6 5.6723 5.0008 -1.3493 10 7 6.8133 5.8619 -1.6929 11 6 6.9239 6.6120 -2.8072 12 8 6.0320 6.6120 -3.6291 13 6 8.1556 7.4506 -3.0319 14 16 8.0047 8.3353 -4.6037 15 6 9.5350 9.2086 -4.6115 16 1 10.2266 9.0934 -3.7900 17 6 9.8521 10.0437 -5.6738 18 7 9.0094 10.1837 -6.6753 19 14 11.4743 10.9701 -5.6816 20 1 12.2369 10.6433 -4.4501 21 1 12.2656 10.5723 -6.8737 22 1 11.2099 12.4306 -5.7278 23 6 7.8163 5.7696 -0.6163 24 6 7.5480 4.3976 0.0622 25 1 8.0030 3.5854 -0.5049 26 6 8.0372 4.3926 1.5119 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8901 34 1 3.9330 0.9285 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 3.6846 3.3439 0.7801 37 1 5.9052 2.3620 -0.8911 38 1 5.9052 2.3628 0.8890 39 1 5.5330 4.2442 -2.1216 40 1 4.7694 5.6035 -1.2508 41 1 8.2589 8.1695 -2.2191 42 1 9.0339 6.8058 -3.0604 43 1 9.2309 10.7675 -7.4175 44 1 8.8233 5.7959 -1.0327 45 1 7.6809 6.5809 0.0988 46 1 7.7114 3.4752 2.0021 47 1 9.1258 4.4458 1.5282 48 1 7.6231 5.2526 2.0380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105847694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = -61.068138 kcal Electronic energy + Delta-G solvation = -23483.589939 eV Core-core repulsion = 20084.496198 eV Total energy + Delta-G solvation = -3399.093741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.98592 -37.97059 -36.88665 -34.63171 -32.83838 -32.40207 -31.02416 -29.47521 -27.88509 -26.41648 -25.51852 -24.84420 -22.92340 -21.85074 -21.35265 -20.26892 -19.25662 -17.63894 -16.60355 -16.50193 -16.16304 -15.39355 -15.17528 -15.06071 -14.78496 -14.55488 -14.12561 -14.00497 -13.71786 -13.66121 -13.24511 -13.12997 -12.91966 -12.67739 -12.48264 -12.32743 -12.16465 -11.93723 -11.74674 -11.60887 -11.44605 -11.42110 -11.07626 -11.05310 -10.98622 -10.91444 -10.84721 -10.73707 -10.64039 -9.77514 -9.31542 -9.05017 -8.74909 -8.38939 -8.18787 -6.46802 -6.19121 -3.89371 2.99354 3.15339 3.23104 3.28487 3.33191 3.67190 3.69260 4.22472 4.26667 4.36313 4.50391 4.55376 4.63500 4.78066 4.92403 4.96547 5.04185 5.12561 5.15866 5.16107 5.18985 5.24407 5.26333 5.35308 5.39040 5.43072 5.48310 5.50989 5.59736 5.60932 5.64354 5.69381 5.74836 5.82735 5.89448 5.90336 5.97229 5.99357 6.04852 6.16515 6.18070 6.52975 6.67671 7.03732 7.62218 7.77615 8.37976 8.65453 9.26088 10.88388 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.002177 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.216759 B =12860.078580 C =13928.889346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.059 3.941 5 N -0.690 5.690 6 C 0.071 3.929 7 C -0.093 4.093 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.629 5.629 11 C 0.547 3.453 12 O -0.515 6.515 13 C -0.146 4.146 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.105 3.895 24 C -0.101 4.101 25 H 0.086 0.914 26 C -0.140 4.140 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.340 0.660 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.455 -19.233 20.463 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.070 4.070 5 N -0.320 5.320 6 C -0.058 4.058 7 C -0.113 4.113 8 H 0.102 0.898 9 C 0.003 3.997 10 N -0.366 5.366 11 C 0.335 3.665 12 O -0.389 6.389 13 C -0.297 4.297 14 S 0.165 5.835 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.018 4.018 24 C -0.120 4.120 25 H 0.105 0.895 26 C -0.198 4.198 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.158 0.842 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.870 -19.019 18.286 28.169 hybrid contribution 2.305 0.339 1.900 3.006 sum -7.565 -18.680 20.186 28.524 Atomic orbital electron populations 1.21764 0.95701 1.01565 1.01968 1.21482 0.96054 0.96690 1.01933 1.21604 0.94511 0.96778 1.02824 1.21979 0.95299 0.89288 1.00443 1.60435 1.07808 1.13638 1.50159 1.21952 0.87585 0.95443 1.00860 1.22305 0.95240 0.95751 0.97981 0.89811 1.21770 0.89271 0.93347 0.95290 1.48529 1.20421 1.46742 1.20895 1.19997 0.88390 0.78751 0.79343 1.90709 1.41252 1.63980 1.43008 1.23506 0.97552 1.01508 1.07124 1.85413 1.27021 1.53989 1.17040 1.22906 1.04453 1.31308 1.09560 0.90908 1.24994 0.97878 0.96148 0.94597 1.70031 1.35265 1.36466 1.08513 0.86118 0.81966 0.79234 0.78175 1.19633 1.20579 1.20569 1.22424 0.93212 0.96618 0.89558 1.22467 0.94871 0.97686 0.97002 0.89530 1.21700 1.01483 1.02018 0.94576 0.92816 0.92529 0.92826 0.91893 0.92292 0.92179 0.90836 0.90982 0.95523 0.84213 0.90584 0.94819 0.91284 0.91569 0.89397 0.89405 0.92255 0.90394 0.91390 0.92371 0.92065 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.78 5.47 -26.73 -0.15 -0.93 16 4 C 0.06 0.41 5.69 -3.83 -0.02 0.39 16 5 N -0.69 -5.44 6.37 -113.78 -0.72 -6.16 16 6 C 0.07 0.55 5.01 -3.82 -0.02 0.53 16 7 C -0.09 -0.82 2.58 -88.78 -0.23 -1.05 16 8 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 9 C 0.13 1.65 6.33 -3.07 -0.02 1.63 16 10 N -0.63 -9.64 3.33 -170.21 -0.57 -10.20 16 11 C 0.55 11.14 7.87 -10.99 -0.09 11.05 16 12 O -0.52 -12.60 16.19 5.56 0.09 -12.51 16 13 C -0.15 -3.12 5.16 36.00 0.19 -2.93 16 14 S -0.06 -1.71 20.57 -107.50 -2.21 -3.93 16 15 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 16 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 19 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.11 1.19 6.18 -2.26 -0.01 1.17 16 24 C -0.10 -0.84 3.11 -88.21 -0.27 -1.12 16 25 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 26 C -0.14 -0.89 9.32 37.16 0.35 -0.54 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.34 2.33 8.73 -39.29 -0.34 1.99 16 37 H 0.08 0.67 8.00 -51.93 -0.42 0.25 16 38 H 0.03 0.22 8.13 -51.93 -0.42 -0.20 16 39 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 42 H 0.09 1.73 7.85 -51.92 -0.41 1.33 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 45 H 0.07 0.71 8.00 -51.93 -0.42 0.29 16 46 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -34.35 400.15 -10.63 -44.98 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -9.09 Total: -2.74 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 0.13 Total: -6.30 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.56 Total: -42.12 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.35 -10.63 -44.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105847694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.090 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds