Wall clock time and date at job start Tue Mar 31 2020 11:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 C 1.53001 * 109.47329 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47194 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99920 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47051 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.64055 * 54.29895 * 7 6 5 9 9 C 1.54321 * 110.72129 * 291.15569 * 7 6 5 10 10 N 1.47019 * 107.27531 * 219.26706 * 9 7 6 11 11 C 1.34778 * 125.65277 * 178.97403 * 10 9 7 12 12 O 1.21279 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00123 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.46867 * 180.02562 * 13 11 10 15 15 C 1.76202 * 99.99872 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99807 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00229 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00023 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46955 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46775 * 120.00449 * 19 17 15 22 22 H 1.48498 * 109.47046 * 240.00311 * 19 17 15 23 23 C 1.47431 * 108.70142 * 358.94050 * 10 9 7 24 24 C 1.55157 * 110.71845 * 177.44165 * 7 6 5 25 25 H 1.09001 * 111.00741 * 35.97146 * 24 7 6 26 26 C 1.53000 * 111.00230 * 272.11400 * 24 7 6 27 27 H 1.09000 * 109.46975 * 300.00198 * 1 2 3 28 28 H 1.09001 * 109.46953 * 59.99749 * 1 2 3 29 29 H 1.09002 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47427 * 239.99523 * 2 1 3 31 31 H 1.09001 * 109.46953 * 120.00251 * 2 1 3 32 32 H 1.09000 * 109.47158 * 59.99915 * 3 2 1 33 33 H 1.09003 * 109.46971 * 299.99616 * 3 2 1 34 34 H 1.08999 * 109.47052 * 59.99229 * 4 3 2 35 35 H 1.09003 * 109.46535 * 299.99582 * 4 3 2 36 36 H 1.00902 * 111.00177 * 56.04435 * 5 4 3 37 37 H 1.09003 * 109.47346 * 60.00099 * 6 5 4 38 38 H 1.09004 * 109.47235 * 299.99912 * 6 5 4 39 39 H 1.09001 * 109.88480 * 338.68818 * 9 7 6 40 40 H 1.09004 * 109.87910 * 99.84742 * 9 7 6 41 41 H 1.08998 * 109.47078 * 300.00341 * 13 11 10 42 42 H 1.08989 * 109.46870 * 60.00231 * 13 11 10 43 43 H 0.96995 * 120.00475 * 179.97438 * 18 17 15 44 44 H 1.08999 * 110.36190 * 142.96411 * 23 10 9 45 45 H 1.08998 * 110.36491 * 265.18090 * 23 10 9 46 46 H 1.08998 * 109.47366 * 60.00704 * 26 24 7 47 47 H 1.09006 * 109.46883 * 179.97438 * 26 24 7 48 48 H 1.08999 * 109.47315 * 299.99847 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8273 -0.0013 6 6 5.5283 2.8664 -0.0013 7 6 5.9997 4.3220 -0.0026 8 1 5.5518 4.8717 0.8253 9 6 5.6723 5.0008 -1.3493 10 7 6.8133 5.8619 -1.6929 11 6 6.9239 6.6120 -2.8072 12 8 6.0320 6.6120 -3.6291 13 6 8.1556 7.4506 -3.0319 14 16 8.0047 8.3353 -4.6037 15 6 9.5350 9.2086 -4.6115 16 1 10.2266 9.0934 -3.7900 17 6 9.8521 10.0437 -5.6738 18 7 9.0094 10.1837 -6.6753 19 14 11.4743 10.9701 -5.6816 20 1 12.2369 10.6433 -4.4501 21 1 12.2656 10.5723 -6.8737 22 1 11.2099 12.4306 -5.7278 23 6 7.8163 5.7696 -0.6163 24 6 7.5480 4.3976 0.0622 25 1 8.0030 3.5854 -0.5049 26 6 8.0372 4.3926 1.5119 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8901 34 1 3.9330 0.9285 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 3.6846 3.3439 0.7801 37 1 5.9052 2.3620 -0.8911 38 1 5.9052 2.3628 0.8890 39 1 5.5330 4.2442 -2.1216 40 1 4.7694 5.6035 -1.2508 41 1 8.2589 8.1695 -2.2191 42 1 9.0339 6.8058 -3.0604 43 1 9.2309 10.7675 -7.4175 44 1 8.8233 5.7959 -1.0327 45 1 7.6809 6.5809 0.0988 46 1 7.7114 3.4752 2.0021 47 1 9.1258 4.4458 1.5282 48 1 7.6231 5.2526 2.0380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105847694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:36 Heat of formation + Delta-G solvation = -83.409721 kcal Electronic energy + Delta-G solvation = -23484.558743 eV Core-core repulsion = 20084.496198 eV Total energy + Delta-G solvation = -3400.062545 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.18354 -39.16908 -37.63155 -35.32219 -34.59739 -33.82429 -31.93122 -30.73633 -28.74935 -27.69138 -27.24868 -25.79059 -23.52818 -22.62642 -21.91580 -21.04330 -20.71116 -19.58655 -18.01045 -17.44608 -17.03540 -16.89471 -16.59123 -16.07931 -15.88171 -15.78317 -15.41925 -14.88376 -14.73355 -14.53900 -14.32585 -14.18279 -13.86244 -13.65050 -13.48515 -13.30511 -13.21390 -13.06809 -12.95347 -12.90582 -12.60522 -12.43970 -12.29514 -12.00902 -11.92026 -11.83069 -11.69563 -11.58478 -11.43591 -11.29353 -11.16653 -10.96473 -10.29227 -9.70667 -9.31762 -8.69763 -8.35474 -6.14769 1.23277 1.41492 1.44588 1.54891 1.57047 2.09904 2.26293 2.98600 3.06723 3.24988 3.48852 3.54909 3.80301 3.91290 4.02832 4.12653 4.20498 4.23529 4.29457 4.36689 4.39871 4.41790 4.49954 4.52836 4.63785 4.65073 4.71714 4.73784 4.77734 4.89409 4.91519 4.97026 4.99879 5.07616 5.11124 5.18330 5.27142 5.33561 5.34183 5.40817 5.40883 5.47918 5.50318 6.08901 6.19155 6.39578 6.51119 7.05354 7.10703 8.74241 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.002177 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.216759 B =12860.078580 C =13928.889346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.063 3.937 5 N -0.705 5.705 6 C 0.077 3.923 7 C -0.078 4.078 8 H 0.100 0.900 9 C 0.123 3.877 10 N -0.619 5.619 11 C 0.542 3.458 12 O -0.570 6.570 13 C -0.118 4.118 14 S -0.153 6.153 15 C -0.545 4.545 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 1.002 2.998 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.093 3.907 24 C -0.089 4.089 25 H 0.087 0.913 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.347 0.653 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 -20.077 23.666 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.066 4.066 5 N -0.337 5.337 6 C -0.052 4.052 7 C -0.097 4.097 8 H 0.118 0.882 9 C 0.000 4.000 10 N -0.353 5.353 11 C 0.331 3.669 12 O -0.449 6.449 13 C -0.269 4.269 14 S 0.074 5.926 15 C -0.693 4.693 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.823 3.177 20 H -0.179 1.179 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.029 4.029 24 C -0.108 4.108 25 H 0.106 0.894 26 C -0.192 4.192 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.166 0.834 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.089 -19.899 21.557 30.432 hybrid contribution 1.679 0.514 0.986 2.014 sum -6.410 -19.385 22.543 30.415 Atomic orbital electron populations 1.21772 0.95578 1.01925 1.01795 1.21468 0.96162 0.96158 1.02181 1.21553 0.94353 0.97175 1.02201 1.21939 0.95366 0.88846 1.00489 1.60403 1.08061 1.14369 1.50900 1.21868 0.87569 0.94483 1.01291 1.22258 0.95829 0.96179 0.95417 0.88167 1.21925 0.88156 0.92484 0.97392 1.48504 1.21986 1.44870 1.19985 1.19834 0.87482 0.79313 0.80318 1.90683 1.42763 1.66079 1.45341 1.23295 0.98901 1.01494 1.03235 1.85624 1.28413 1.55827 1.22714 1.23225 1.04305 1.31549 1.10221 0.89843 1.26169 1.02200 0.96984 0.93863 1.70197 1.37772 1.37437 1.09424 0.84868 0.76464 0.77492 0.78869 1.17909 1.19869 1.19851 1.22839 0.92222 0.99194 0.88671 1.22444 0.94259 0.95703 0.98426 0.89419 1.21677 1.01879 1.03075 0.92544 0.92487 0.93221 0.92215 0.92252 0.91399 0.91588 0.92626 0.92017 0.94255 0.83391 0.91847 0.92540 0.93115 0.92941 0.87571 0.87559 0.91952 0.89995 0.89762 0.90856 0.91464 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.30 5.93 30.59 0.18 -1.12 16 3 C -0.11 -1.42 5.47 30.59 0.17 -1.25 16 4 C 0.06 0.79 5.69 86.30 0.49 1.29 16 5 N -0.71 -10.14 6.37 -513.88 -3.27 -13.41 16 6 C 0.08 1.02 5.01 86.30 0.43 1.45 16 7 C -0.08 -1.18 2.58 -9.60 -0.02 -1.20 16 8 H 0.10 1.27 8.04 -2.39 -0.02 1.25 16 9 C 0.12 3.19 6.33 86.73 0.55 3.74 16 10 N -0.62 -18.65 3.33 -810.82 -2.70 -21.35 16 11 C 0.54 22.50 7.87 87.66 0.69 23.19 16 12 O -0.57 -29.23 16.19 -3.03 -0.05 -29.27 16 13 C -0.12 -5.04 5.16 71.23 0.37 -4.67 16 14 S -0.15 -8.84 20.57 -56.49 -1.16 -10.00 16 15 C -0.55 -31.78 9.50 67.95 0.65 -31.13 16 16 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 17 C 0.01 0.72 5.49 84.86 0.47 1.19 16 18 N -0.91 -56.91 13.22 21.65 0.29 -56.63 16 19 Si 1.00 44.04 29.55 68.60 2.03 46.07 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 C 0.09 1.86 6.18 87.02 0.54 2.40 16 24 C -0.09 -1.22 3.11 -9.23 -0.03 -1.24 16 25 H 0.09 1.24 8.05 -2.39 -0.02 1.22 16 26 C -0.13 -1.13 9.32 71.98 0.67 -0.46 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.35 4.08 8.73 -89.69 -0.78 3.29 16 37 H 0.06 1.02 8.00 -2.39 -0.02 1.01 16 38 H 0.06 0.54 8.13 -2.38 -0.02 0.52 16 39 H 0.05 1.51 7.73 -2.39 -0.02 1.49 16 40 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 42 H 0.11 4.10 7.85 -2.40 -0.02 4.09 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.08 1.62 7.48 -2.39 -0.02 1.60 16 45 H 0.08 1.49 8.00 -2.39 -0.02 1.47 16 46 H 0.07 0.45 8.13 -2.39 -0.02 0.43 16 47 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.06 0.52 8.09 -2.39 -0.02 0.50 16 Total: -1.00 -77.99 400.15 1.11 -76.87 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.12 Total: 16.42 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.86 Total: -8.71 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -5.68 Total: -91.38 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -77.99 1.11 -76.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105847694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.539 kcal (2) G-P(sol) polarization free energy of solvation -77.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds