Wall clock time and date at job start Tue Mar 31 2020 11:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52999 * 109.46925 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.46974 * 180.02562 * 4 3 2 6 6 C 1.46844 * 111.00235 * 289.70332 * 5 4 3 7 7 C 1.53036 * 109.52791 * 174.15862 * 6 5 4 8 8 H 1.08998 * 109.50023 * 299.24285 * 7 6 5 9 9 N 1.46501 * 109.53763 * 179.13676 * 7 6 5 10 10 C 1.34771 * 119.99432 * 155.17872 * 9 7 6 11 11 O 1.21283 * 120.00628 * 359.97438 * 10 9 7 12 12 C 1.50710 * 119.99621 * 180.02562 * 10 9 7 13 13 S 1.81000 * 109.47131 * 179.97438 * 12 10 9 14 14 C 1.76196 * 100.00057 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99445 * 0.02562 * 14 13 12 16 16 C 1.38793 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.31631 * 120.00380 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99974 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47126 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46632 * 120.00096 * 18 16 14 21 21 H 1.48495 * 109.47236 * 240.00288 * 18 16 14 22 22 C 1.53119 * 109.27329 * 59.17605 * 7 6 5 23 23 C 1.53118 * 109.16262 * 302.34508 * 22 7 6 24 24 C 1.46838 * 111.00116 * 165.48922 * 5 4 3 25 25 H 1.09007 * 109.46203 * 65.82322 * 24 5 4 26 26 C 1.53003 * 109.46131 * 305.85896 * 24 5 4 27 27 H 1.09006 * 109.47083 * 299.99924 * 1 2 3 28 28 H 1.08995 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46854 * 59.99493 * 1 2 3 30 30 H 1.08999 * 109.47191 * 120.00179 * 2 1 3 31 31 H 1.08996 * 109.46612 * 240.00336 * 2 1 3 32 32 H 1.08999 * 109.47173 * 300.00190 * 3 2 1 33 33 H 1.09006 * 109.47019 * 60.00037 * 3 2 1 34 34 H 1.08991 * 109.47134 * 300.00154 * 4 3 2 35 35 H 1.08996 * 109.46676 * 60.00492 * 4 3 2 36 36 H 1.09006 * 109.46205 * 294.17716 * 6 5 4 37 37 H 1.09003 * 109.46306 * 54.13894 * 6 5 4 38 38 H 0.97001 * 119.99502 * 335.17820 * 9 7 6 39 39 H 1.08996 * 109.46802 * 300.00080 * 12 10 9 40 40 H 1.09002 * 109.46946 * 59.99782 * 12 10 9 41 41 H 0.96992 * 120.00467 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.52233 * 182.44189 * 22 7 6 43 43 H 1.09000 * 109.57659 * 62.28738 * 22 7 6 44 44 H 1.08996 * 109.50794 * 297.71506 * 23 22 7 45 45 H 1.09004 * 109.50326 * 177.59695 * 23 22 7 46 46 H 1.08997 * 109.47186 * 67.29943 * 26 24 5 47 47 H 1.09005 * 109.47005 * 187.29024 * 26 24 5 48 48 H 1.09000 * 109.47018 * 307.28672 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8275 0.0013 6 6 3.8000 3.4781 -1.2893 7 6 4.1890 4.9558 -1.2046 8 1 3.5904 5.4462 -0.4370 9 7 3.9493 5.6004 -2.4982 10 6 3.7303 6.9288 -2.5586 11 8 3.7314 7.5906 -1.5423 12 6 3.4831 7.5919 -3.8893 13 16 3.2249 9.3661 -3.6405 14 6 2.9676 9.8745 -5.3078 15 1 2.9998 9.1469 -6.1053 16 6 2.7226 11.2099 -5.5961 17 7 2.6829 12.0966 -4.6242 18 14 2.4506 11.7491 -7.3639 19 1 2.5455 10.5697 -8.2613 20 1 1.1039 12.3614 -7.4928 21 1 3.4854 12.7444 -7.7427 22 6 5.6731 5.0679 -0.8448 23 6 5.9257 4.3409 0.4789 24 6 5.4863 2.8811 0.3454 25 1 6.0677 2.3971 -0.4395 26 6 5.7182 2.1555 1.6723 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9330 0.9287 0.8908 35 1 3.9336 0.9285 -0.8891 36 1 4.3893 2.9914 -2.0665 37 1 2.7405 3.3948 -1.5313 38 1 3.9481 5.0710 -3.3110 39 1 4.3452 7.4373 -4.5380 40 1 2.5972 7.1576 -4.3526 41 1 2.5121 13.0299 -4.8257 42 1 5.9443 6.1185 -0.7409 43 1 6.2750 4.6125 -1.6312 44 1 5.3544 4.8217 1.2730 45 1 6.9882 4.3807 0.7190 46 1 5.5295 1.0899 1.5415 47 1 6.7493 2.3051 1.9928 48 1 5.0413 2.5545 2.4277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131829861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:06 Heat of formation + Delta-G solvation = -80.864703 kcal Electronic energy + Delta-G solvation = -24068.783425 eV Core-core repulsion = 20668.831240 eV Total energy + Delta-G solvation = -3399.952185 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19188 -39.90580 -36.76686 -35.65222 -34.58741 -33.59122 -32.71131 -30.44903 -29.55597 -27.74742 -27.23573 -25.41313 -23.42558 -22.57366 -21.78247 -21.44330 -20.75984 -19.81000 -17.93310 -17.68463 -16.88621 -16.57321 -16.51969 -16.24801 -16.05374 -15.74017 -15.39280 -14.99733 -14.85804 -14.68284 -14.44620 -14.20890 -13.97636 -13.60946 -13.42699 -13.16545 -13.15103 -13.12196 -12.91580 -12.79417 -12.59619 -12.27294 -12.19646 -11.98381 -11.89095 -11.77729 -11.71513 -11.64288 -11.26506 -11.23523 -11.16089 -10.87839 -10.27277 -10.10491 -9.26824 -8.67040 -8.34953 -6.13063 1.26205 1.41318 1.46449 1.57738 1.61222 2.17063 2.27246 2.94464 2.99180 3.32334 3.66336 3.78863 3.88426 3.90771 4.00937 4.11617 4.18123 4.28619 4.28974 4.30830 4.42696 4.44081 4.49823 4.53233 4.59019 4.64685 4.75257 4.81579 4.85474 4.91425 4.98371 4.99971 5.04361 5.06782 5.15104 5.20357 5.26241 5.32377 5.41439 5.41778 5.41980 5.49293 5.52379 6.12289 6.19609 6.19900 6.50803 7.06355 7.25233 8.74564 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.018542 B = 0.002451 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.746277 B =11418.892439 C =12480.059545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.115 4.115 4 C 0.055 3.945 5 N -0.543 5.543 6 C 0.061 3.939 7 C 0.152 3.848 8 H 0.063 0.937 9 N -0.710 5.710 10 C 0.536 3.464 11 O -0.563 6.563 12 C -0.128 4.128 13 S -0.152 6.152 14 C -0.544 4.544 15 H 0.083 0.917 16 C 0.012 3.988 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.128 4.128 23 C -0.105 4.105 24 C 0.082 3.918 25 H 0.048 0.952 26 C -0.144 4.144 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.415 0.585 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 -29.099 7.607 30.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.153 4.153 4 C -0.073 4.073 5 N -0.269 5.269 6 C -0.068 4.068 7 C 0.047 3.953 8 H 0.081 0.919 9 N -0.363 5.363 10 C 0.322 3.678 11 O -0.441 6.441 12 C -0.280 4.280 13 S 0.075 5.925 14 C -0.692 4.692 15 H 0.101 0.899 16 C -0.193 4.193 17 N -0.548 5.548 18 Si 0.822 3.178 19 H -0.180 1.180 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.167 4.167 23 C -0.143 4.143 24 C -0.026 4.026 25 H 0.066 0.934 26 C -0.201 4.201 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.252 0.748 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.600 -27.603 9.712 29.483 hybrid contribution 0.136 -0.312 -2.869 2.889 sum 3.736 -27.915 6.843 28.984 Atomic orbital electron populations 1.21779 0.95907 1.01882 1.01612 1.21453 0.95857 0.95929 1.02402 1.21599 0.94597 0.97132 1.01940 1.22258 0.95490 0.87589 1.01914 1.61805 1.17387 1.17805 1.29877 1.22157 1.01966 0.91590 0.91057 1.20860 0.96364 0.93226 0.84866 0.91854 1.45734 1.73009 1.06813 1.10769 1.20058 0.75213 0.82654 0.89872 1.90695 1.51386 1.64486 1.37517 1.23368 1.06366 1.00095 0.98130 1.85605 1.93499 0.99930 1.13483 1.23229 1.56364 0.96953 0.92678 0.89903 1.26148 0.94060 0.95492 1.03587 1.70190 1.47191 1.03015 1.34430 0.84889 0.78027 0.78511 0.76408 1.17998 1.19932 1.19923 1.21939 0.95664 1.00258 0.98862 1.21575 1.01779 0.94636 0.96329 1.21667 0.87272 0.95591 0.98054 0.93419 1.21899 1.02385 1.00100 0.95719 0.93038 0.92068 0.93206 0.91338 0.91689 0.92766 0.92294 0.89028 0.94217 0.92868 0.89816 0.74831 0.87214 0.87193 0.91998 0.93969 0.90762 0.92264 0.89762 0.91366 0.91031 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.12 -1.27 5.93 30.60 0.18 -1.09 16 3 C -0.11 -1.56 5.23 30.59 0.16 -1.40 16 4 C 0.05 0.70 4.75 86.30 0.41 1.11 16 5 N -0.54 -9.09 4.46 -871.11 -3.88 -12.97 16 6 C 0.06 1.08 4.78 86.33 0.41 1.50 16 7 C 0.15 3.74 2.61 45.04 0.12 3.85 16 8 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 9 N -0.71 -18.56 5.08 -442.28 -2.25 -20.81 16 10 C 0.54 20.23 7.81 87.66 0.68 20.91 16 11 O -0.56 -26.79 15.53 -3.04 -0.05 -26.84 16 12 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 13 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 14 C -0.54 -31.29 9.50 67.95 0.65 -30.64 16 15 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 16 C 0.01 0.67 5.49 84.86 0.47 1.14 16 17 N -0.91 -56.46 13.22 21.65 0.29 -56.18 16 18 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.13 -2.98 5.58 30.67 0.17 -2.81 16 23 C -0.10 -1.96 5.37 30.65 0.16 -1.80 16 24 C 0.08 1.24 2.44 44.94 0.11 1.35 16 25 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 26 C -0.14 -1.69 8.56 71.98 0.62 -1.07 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.82 6.59 -2.39 -0.02 0.81 16 33 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.09 1.01 5.61 -2.39 -0.01 0.99 16 35 H 0.04 0.47 8.07 -2.39 -0.02 0.45 16 36 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.08 1.50 6.42 -2.39 -0.02 1.49 16 38 H 0.41 7.78 8.60 -92.71 -0.80 6.98 16 39 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 40 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.07 0.63 6.46 -2.39 -0.02 0.62 16 47 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -74.93 389.60 0.39 -74.55 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.12 Total: 20.81 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 5.29 Total: -14.70 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -5.84 Total: -89.95 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -74.93 0.39 -74.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131829861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.318 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds