Wall clock time and date at job start Tue Mar 31 2020 11:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47093 * 2 1 4 4 C 1.53000 * 109.47093 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47339 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99918 * 264.15916 * 5 4 3 7 7 H 1.08005 * 119.99980 * 188.28474 * 6 5 4 8 8 C 1.38810 * 120.00069 * 8.28722 * 6 5 4 9 9 N 1.31623 * 120.00096 * 25.07300 * 8 6 5 10 10 Si 1.86802 * 120.00209 * 205.07681 * 8 6 5 11 11 H 1.48497 * 109.46865 * 84.98576 * 10 8 6 12 12 H 1.48497 * 109.46999 * 204.98467 * 10 8 6 13 13 H 1.48493 * 109.46757 * 324.98546 * 10 8 6 14 14 C 1.46503 * 120.00228 * 84.15398 * 5 4 3 15 15 C 1.50697 * 109.46956 * 270.00361 * 14 5 4 16 16 C 1.36339 * 120.05323 * 105.00524 * 15 14 5 17 17 C 1.40908 * 118.25470 * 180.02562 * 16 15 14 18 18 C 1.40375 * 121.29134 * 179.97438 * 17 16 15 19 19 C 1.36181 * 119.63145 * 180.02562 * 18 17 16 20 20 C 1.39309 * 120.86227 * 0.02562 * 19 18 17 21 21 C 1.36117 * 121.04113 * 0.02562 * 20 19 18 22 22 C 1.40559 * 119.75725 * 359.97438 * 21 20 19 23 23 N 1.33758 * 121.00112 * 179.72610 * 22 21 20 24 24 C 1.31565 * 121.25725 * 179.72596 * 23 22 21 25 25 O 1.35577 * 119.19916 * 180.30996 * 24 23 22 26 26 C 1.42897 * 117.00135 * 0.25421 * 25 24 23 27 27 H 1.09008 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47220 * 299.99659 * 1 2 3 29 29 H 1.08995 * 109.47049 * 60.00243 * 1 2 3 30 30 H 1.09004 * 109.46995 * 239.99579 * 2 1 3 31 31 H 1.09005 * 109.47230 * 120.00284 * 2 1 3 32 32 H 1.08998 * 109.47131 * 60.00478 * 3 2 1 33 33 H 1.08996 * 109.47120 * 300.00336 * 3 2 1 34 34 H 1.09004 * 109.47433 * 60.00214 * 4 3 2 35 35 H 1.09005 * 109.47230 * 300.00284 * 4 3 2 36 36 H 0.96998 * 120.00468 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.47136 * 150.00511 * 14 5 4 38 38 H 1.08998 * 109.46737 * 30.00640 * 14 5 4 39 39 H 1.07992 * 120.87072 * 359.97438 * 16 15 14 40 40 H 1.08002 * 120.18391 * 0.03169 * 18 17 16 41 41 H 1.08008 * 119.56773 * 180.02562 * 19 18 17 42 42 H 1.08001 * 119.47991 * 179.97438 * 20 19 18 43 43 H 1.07996 * 120.12479 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.47052 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.46647 * 299.99670 * 26 25 24 46 46 H 1.09000 * 109.47335 * 60.00015 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.4009 3.4293 -1.1782 7 1 4.8850 4.3947 -1.1689 8 6 4.1259 2.8024 -2.3858 9 7 3.1476 1.9253 -2.4642 10 14 5.1442 3.2035 -3.8996 11 1 6.3707 2.3665 -3.9071 12 1 4.3468 2.9242 -5.1208 13 1 5.5244 4.6387 -3.8742 14 6 4.1802 3.5570 1.2637 15 6 2.8895 4.2796 1.5514 16 6 2.0401 3.8059 2.5069 17 6 0.8435 4.5110 2.7445 18 6 -0.0768 4.0798 3.7128 19 6 -1.2232 4.7868 3.9142 20 6 -1.4957 5.9331 3.1711 21 6 -0.6258 6.3786 2.2236 22 6 0.5681 5.6757 1.9870 23 7 1.4380 6.0881 1.0583 24 6 2.5595 5.4370 0.8363 25 8 3.4142 5.8957 -0.1109 26 6 3.0311 7.0809 -0.8112 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 2.9556 1.4870 -3.3079 37 1 4.9921 4.2802 1.1868 38 1 4.3926 2.8568 2.0715 39 1 2.2779 2.9134 3.0664 40 1 0.1232 3.1923 4.2950 41 1 -1.9304 4.4543 4.6598 42 1 -2.4119 6.4765 3.3489 43 1 -0.8521 7.2690 1.6558 44 1 3.8010 7.3379 -1.5388 45 1 2.0868 6.9085 -1.3277 46 1 2.9131 7.9001 -0.1019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137207025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:07 Heat of formation + Delta-G solvation = 37.449275 kcal Electronic energy + Delta-G solvation = -27387.558128 eV Core-core repulsion = 23857.292471 eV Total energy + Delta-G solvation = -3530.265657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.56616 -38.37967 -36.64106 -35.58966 -33.68886 -33.05380 -31.50228 -29.89864 -29.42582 -27.97254 -26.91944 -25.68933 -23.71098 -22.99049 -22.21694 -21.72626 -20.56740 -19.84567 -18.23256 -17.51899 -16.63487 -16.35739 -15.51880 -15.10224 -14.83004 -14.48976 -14.16035 -13.92105 -13.63137 -13.55136 -13.40392 -13.32491 -13.02685 -12.76671 -12.62050 -11.82875 -11.62571 -11.56814 -11.49448 -11.39256 -11.28093 -11.23340 -10.87878 -10.63344 -10.42098 -10.25262 -10.18439 -10.16245 -9.99897 -9.84083 -9.54489 -9.18797 -9.12541 -8.32107 -7.89245 -7.69180 -6.89252 -5.74515 -3.00006 0.82964 1.32028 2.41524 3.30679 3.40477 3.48353 3.48912 3.69631 4.47711 4.59112 4.68605 4.95471 5.12243 5.24400 5.33202 5.38392 5.48430 5.53709 5.65700 5.72528 5.73369 5.81130 5.81728 5.91253 6.01617 6.02791 6.08608 6.15263 6.27638 6.38573 6.44886 6.50827 6.56823 6.60499 6.67673 6.72880 6.75889 6.86949 6.92048 6.94046 7.07987 7.20874 7.28090 7.75886 7.82712 7.85793 8.15928 8.35119 8.39083 9.25528 9.85575 10.29678 11.28399 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.005711 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.716032 B = 4901.570732 C = 6207.378792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.122 4.122 4 C 0.169 3.831 5 N -0.579 5.579 6 C -0.227 4.227 7 H 0.084 0.916 8 C -0.007 4.007 9 N -0.892 5.892 10 Si 0.896 3.104 11 H -0.290 1.290 12 H -0.295 1.295 13 H -0.282 1.282 14 C 0.188 3.812 15 C -0.133 4.133 16 C -0.053 4.053 17 C -0.125 4.125 18 C -0.084 4.084 19 C -0.144 4.144 20 C -0.107 4.107 21 C -0.107 4.107 22 C 0.159 3.841 23 N -0.557 5.557 24 C 0.381 3.619 25 O -0.274 6.274 26 C 0.043 3.957 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.022 0.978 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.003 0.997 36 H 0.250 0.750 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 3.945 10.391 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.161 4.161 4 C 0.044 3.956 5 N -0.296 5.296 6 C -0.356 4.356 7 H 0.102 0.898 8 C -0.204 4.204 9 N -0.538 5.538 10 Si 0.727 3.273 11 H -0.217 1.217 12 H -0.222 1.222 13 H -0.208 1.208 14 C 0.060 3.940 15 C -0.140 4.140 16 C -0.080 4.080 17 C -0.127 4.127 18 C -0.103 4.103 19 C -0.162 4.162 20 C -0.127 4.127 21 C -0.126 4.126 22 C 0.038 3.962 23 N -0.285 5.285 24 C 0.188 3.812 25 O -0.176 6.176 26 C -0.053 4.053 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.153 0.847 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.096 4.490 9.617 11.774 hybrid contribution 0.018 -0.338 -0.602 0.691 sum -5.078 4.152 9.015 11.149 Atomic orbital electron populations 1.21722 0.97584 0.99716 1.01107 1.21398 0.94212 0.99465 1.00104 1.22201 0.98601 0.93836 1.01504 1.20993 0.92065 0.84144 0.98426 1.44648 1.73709 1.09594 1.01692 1.19476 1.29741 1.03317 0.83067 0.89795 1.24744 0.98102 1.00289 0.97252 1.70168 1.27197 1.31642 1.24757 0.86370 0.80373 0.77847 0.82741 1.21711 1.22197 1.20765 1.19868 0.90876 0.93751 0.89506 1.21069 1.03987 0.93699 0.95258 1.21005 0.92076 0.98475 0.96433 1.18721 0.96789 0.97538 0.99682 1.20872 0.93661 0.99055 0.96676 1.20694 0.97847 0.96547 1.01115 1.20704 0.99100 0.96758 0.96166 1.20629 0.92825 1.00206 0.98904 1.18344 0.93623 0.92526 0.91669 1.67646 1.04322 1.34892 1.21686 1.19924 0.86148 0.88752 0.86331 1.86485 1.42162 1.42307 1.46682 1.22743 1.01522 0.85364 0.95682 0.94277 0.93873 0.93074 0.92359 0.94413 0.95951 0.88588 0.89112 0.97869 0.93919 0.91997 0.92989 0.84717 0.85992 0.86423 0.86216 0.85658 0.89132 0.92630 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.16 0.37 -2.09 16 2 C -0.11 -2.16 5.93 -26.73 -0.16 -2.32 16 3 C -0.12 -2.69 4.88 -26.73 -0.13 -2.82 16 4 C 0.17 3.85 4.92 -4.04 -0.02 3.83 16 5 N -0.58 -13.53 2.52 -174.60 -0.44 -13.97 16 6 C -0.23 -5.81 8.51 -15.06 -0.13 -5.94 16 7 H 0.08 2.16 6.85 -52.48 -0.36 1.80 16 8 C -0.01 -0.18 4.90 -17.43 -0.09 -0.27 16 9 N -0.89 -24.07 8.58 55.49 0.48 -23.59 16 10 Si 0.90 21.23 29.62 -169.99 -5.04 16.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.19 3.73 5.52 -5.19 -0.03 3.70 16 15 C -0.13 -2.60 4.90 -104.65 -0.51 -3.11 16 16 C -0.05 -0.93 7.88 -39.26 -0.31 -1.24 16 17 C -0.12 -2.13 5.74 -106.78 -0.61 -2.74 16 18 C -0.08 -1.17 9.77 -39.52 -0.39 -1.56 16 19 C -0.14 -1.80 9.96 -39.92 -0.40 -2.19 16 20 C -0.11 -1.37 9.94 -39.95 -0.40 -1.77 16 21 C -0.11 -1.63 9.98 -39.47 -0.39 -2.02 16 22 C 0.16 2.90 6.60 -84.85 -0.56 2.34 16 23 N -0.56 -11.07 9.13 -11.05 -0.10 -11.17 16 24 C 0.38 7.86 7.46 -17.01 -0.13 7.73 16 25 O -0.27 -5.63 7.45 -18.43 -0.14 -5.77 16 26 C 0.04 0.72 10.36 101.05 1.05 1.76 16 27 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.48 5.96 -51.93 -0.31 0.17 16 33 H 0.10 2.53 6.32 -51.93 -0.33 2.20 16 34 H 0.09 2.33 5.86 -51.93 -0.30 2.02 16 35 H 0.00 0.07 7.98 -51.93 -0.41 -0.35 16 36 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.06 1.22 7.88 -51.93 -0.41 0.81 16 38 H 0.05 0.91 7.76 -51.93 -0.40 0.51 16 39 H 0.14 2.02 8.01 -52.49 -0.42 1.60 16 40 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 46 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -28.65 368.01 -9.68 -38.32 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.15 Total: 3.13 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.83 Total: -8.69 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.07 Total: -48.73 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.14 Total: -5.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.04 Total: 16.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.65 -9.68 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137207025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.771 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds