Wall clock time and date at job start Tue Mar 31 2020 11:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 C 1.53006 * 109.46997 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46935 * 179.97438 * 4 3 2 6 6 C 1.37094 * 120.00153 * 263.61513 * 5 4 3 7 7 H 1.07997 * 120.00059 * 142.25855 * 6 5 4 8 8 C 1.38958 * 119.99870 * 322.25495 * 6 5 4 9 9 N 1.31407 * 119.99749 * 157.62430 * 8 6 5 10 10 Si 1.86800 * 119.99717 * 337.62811 * 8 6 5 11 11 H 1.48491 * 109.47218 * 95.70347 * 10 8 6 12 12 H 1.48502 * 109.46931 * 215.70102 * 10 8 6 13 13 H 1.48500 * 109.47307 * 335.69974 * 10 8 6 14 14 C 1.34783 * 119.99585 * 83.61212 * 5 4 3 15 15 O 1.21286 * 120.00145 * 0.02562 * 14 5 4 16 16 C 1.50700 * 119.99508 * 179.97438 * 14 5 4 17 17 C 1.50700 * 109.46922 * 180.02562 * 16 14 5 18 18 C 1.34238 * 125.03027 * 85.00342 * 17 16 14 19 19 C 1.46491 * 106.99404 * 179.97438 * 18 17 16 20 20 C 1.39629 * 134.03094 * 179.97438 * 19 18 17 21 21 C 1.36630 * 119.76421 * 180.02562 * 20 19 18 22 22 C 1.38824 * 120.52674 * 359.97438 * 21 20 19 23 23 C 1.37754 * 120.66792 * 0.24759 * 22 21 20 24 24 C 1.39121 * 119.77743 * 359.50936 * 23 22 21 25 25 N 1.36826 * 125.03746 * 264.99578 * 17 16 14 26 26 C 1.46504 * 125.06047 * 359.97438 * 25 17 16 27 27 H 1.09002 * 109.46916 * 300.00356 * 1 2 3 28 28 H 1.08998 * 109.46881 * 60.00223 * 1 2 3 29 29 H 1.09002 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46916 * 239.99644 * 2 1 3 31 31 H 1.09001 * 109.47311 * 120.00057 * 2 1 3 32 32 H 1.08987 * 109.47352 * 59.99981 * 3 2 1 33 33 H 1.08998 * 109.46974 * 299.99720 * 3 2 1 34 34 H 1.08994 * 109.47066 * 59.99655 * 4 3 2 35 35 H 1.08998 * 109.46678 * 299.99470 * 4 3 2 36 36 H 0.97006 * 119.99588 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47344 * 59.99637 * 16 14 5 38 38 H 1.09007 * 109.47250 * 300.00182 * 16 14 5 39 39 H 1.07997 * 126.50807 * 359.97438 * 18 17 16 40 40 H 1.07997 * 120.11950 * 359.97438 * 20 19 18 41 41 H 1.07998 * 119.73397 * 179.97438 * 21 20 19 42 42 H 1.08007 * 119.66721 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.10955 * 179.68046 * 23 22 21 44 44 H 1.08993 * 109.46991 * 269.99675 * 26 25 17 45 45 H 1.08997 * 109.47003 * 29.99909 * 26 25 17 46 46 H 1.08997 * 109.47021 * 149.99667 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.4110 3.4255 -1.1815 7 1 4.1883 4.4699 -1.3426 8 6 5.0548 2.6918 -2.1704 9 7 5.0065 3.0912 -3.4214 10 14 5.9890 1.1377 -1.7215 11 1 5.1143 -0.0437 -1.9315 12 1 7.1949 1.0196 -2.5800 13 1 6.4005 1.2018 -0.2961 14 6 4.1611 3.5025 1.1586 15 8 3.8497 2.9699 2.2027 16 6 4.6641 4.9231 1.1580 17 6 4.6835 5.4497 2.5699 18 6 5.6860 5.2718 3.4448 19 6 5.2947 5.9435 4.6865 20 6 5.9012 6.1084 5.9333 21 6 5.2569 6.8090 6.9136 22 6 4.0039 7.3590 6.6798 23 6 3.3855 7.2046 5.4586 24 6 4.0254 6.4994 4.4444 25 7 3.6822 6.1799 3.1498 26 6 2.4323 6.5664 2.4906 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.9330 0.9286 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 5.4563 2.5792 -4.1117 37 1 4.0054 5.5415 0.5482 38 1 5.6729 4.9513 0.7461 39 1 6.6063 4.7354 3.2671 40 1 6.8756 5.6829 6.1225 41 1 5.7263 6.9358 7.8779 42 1 3.5070 7.9099 7.4648 43 1 2.4084 7.6320 5.2882 44 1 2.5642 7.5297 1.9980 45 1 2.1642 5.8132 1.7498 46 1 1.6386 6.6440 3.2336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182265120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:58 Heat of formation + Delta-G solvation = 20.558520 kcal Electronic energy + Delta-G solvation = -26216.497717 eV Core-core repulsion = 22685.499622 eV Total energy + Delta-G solvation = -3530.998095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.10835 -38.91974 -36.93546 -35.54157 -34.08712 -32.69589 -31.96950 -31.11498 -30.02788 -28.70015 -26.89351 -25.78585 -24.83488 -23.36993 -21.67863 -21.27303 -20.75857 -19.71704 -18.87741 -17.09498 -16.68185 -16.37067 -15.99158 -15.46536 -15.01754 -14.85164 -14.64217 -14.38423 -13.88791 -13.79108 -13.62630 -13.29748 -12.85288 -12.80137 -12.75736 -12.64815 -12.34761 -12.24890 -11.93233 -11.81060 -11.67627 -11.41179 -11.19616 -11.03215 -10.90788 -10.72751 -10.62665 -10.61032 -10.41076 -10.09083 -9.83534 -9.37297 -9.26238 -8.68162 -7.88686 -7.78599 -7.28962 -6.58868 -4.18045 1.37123 1.86957 2.97793 3.00070 3.13349 3.16628 3.25384 3.64473 4.04978 4.15672 4.34543 4.85130 4.89070 4.94467 5.04987 5.18706 5.28269 5.32055 5.34198 5.36497 5.48584 5.57707 5.66996 5.72109 5.74631 5.77046 5.89294 6.00126 6.08144 6.09217 6.12577 6.19053 6.21481 6.25817 6.31982 6.35098 6.37584 6.46801 6.66905 6.74923 6.80829 6.85545 7.06340 7.19436 7.28432 7.53233 7.61655 7.96632 8.13978 8.86098 9.25733 9.60771 10.51521 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.003849 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.005902 B = 7272.668078 C = 8124.304572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.105 3.895 5 N -0.462 5.462 6 C -0.352 4.352 7 H 0.104 0.896 8 C 0.072 3.928 9 N -0.855 5.855 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.260 1.260 14 C 0.480 3.520 15 O -0.585 6.585 16 C -0.065 4.065 17 C 0.125 3.875 18 C -0.200 4.200 19 C -0.101 4.101 20 C -0.073 4.073 21 C -0.155 4.155 22 C -0.111 4.111 23 C -0.129 4.129 24 C 0.097 3.903 25 N -0.479 5.479 26 C 0.078 3.922 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.113 0.887 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 4.441 10.285 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.164 4.164 4 C -0.018 4.018 5 N -0.183 5.183 6 C -0.478 4.478 7 H 0.121 0.879 8 C -0.137 4.137 9 N -0.490 5.490 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.184 1.184 14 C 0.269 3.731 15 O -0.469 6.469 16 C -0.106 4.106 17 C 0.018 3.982 18 C -0.224 4.224 19 C -0.106 4.106 20 C -0.091 4.091 21 C -0.175 4.175 22 C -0.130 4.130 23 C -0.149 4.149 24 C -0.009 4.009 25 N -0.162 5.162 26 C -0.063 4.063 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.884 4.221 10.363 11.844 hybrid contribution 0.419 -0.814 -0.254 0.950 sum -3.465 3.407 10.108 11.216 Atomic orbital electron populations 1.21738 0.96180 1.00912 1.01680 1.21479 0.95573 0.97472 1.01627 1.21837 0.96106 0.96051 1.02370 1.21615 0.93957 0.85181 1.01028 1.43726 1.56765 1.11667 1.06139 1.19050 1.39467 0.98372 0.90936 0.87887 1.25317 0.95703 0.98074 0.94573 1.69771 1.39368 1.40202 0.99628 0.86998 0.80046 0.83078 0.79937 1.20052 1.21320 1.18398 1.20106 0.81427 0.88225 0.83341 1.90601 1.54167 1.70631 1.31540 1.20143 1.05247 0.95151 0.90036 1.19959 0.87897 0.95073 0.95312 1.21330 1.01126 1.08170 0.91818 1.19203 0.94627 1.01894 0.94829 1.20233 0.99274 0.98204 0.91427 1.20509 0.96164 1.01694 0.99103 1.20664 0.95638 1.00808 0.95887 1.19941 0.99971 1.02657 0.92376 1.18204 0.95869 1.01401 0.85448 1.43691 1.16277 1.46307 1.09899 1.21883 0.84508 1.01334 0.98613 0.92971 0.92798 0.93247 0.92245 0.92286 0.91995 0.91425 0.91389 0.91812 0.91375 0.88907 0.86592 0.83939 0.86423 0.86590 0.86352 0.86854 0.91443 0.89741 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.36 5.49 -26.73 -0.15 -2.51 16 4 C 0.11 2.27 3.93 -4.04 -0.02 2.26 16 5 N -0.46 -10.62 2.18 -114.81 -0.25 -10.87 16 6 C -0.35 -8.59 9.05 -14.93 -0.14 -8.72 16 7 H 0.10 2.58 7.23 -52.49 -0.38 2.21 16 8 C 0.07 1.80 5.26 -17.47 -0.09 1.71 16 9 N -0.86 -22.53 13.96 55.50 0.77 -21.76 16 10 Si 0.87 19.79 25.06 -169.99 -4.26 15.53 16 11 H -0.27 -6.00 6.69 56.52 0.38 -5.62 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 14 C 0.48 10.70 7.58 -10.98 -0.08 10.62 16 15 O -0.59 -14.38 15.72 5.55 0.09 -14.30 16 16 C -0.07 -1.23 4.39 -29.03 -0.13 -1.36 16 17 C 0.12 2.29 5.32 -81.77 -0.44 1.86 16 18 C -0.20 -3.66 10.95 -37.67 -0.41 -4.07 16 19 C -0.10 -1.74 6.37 -105.14 -0.67 -2.41 16 20 C -0.07 -1.07 10.05 -39.64 -0.40 -1.47 16 21 C -0.16 -1.99 9.97 -39.95 -0.40 -2.39 16 22 C -0.11 -1.39 10.01 -39.54 -0.40 -1.78 16 23 C -0.13 -1.80 9.96 -39.43 -0.39 -2.19 16 24 C 0.10 1.62 6.81 -83.99 -0.57 1.05 16 25 N -0.48 -8.06 3.18 -117.20 -0.37 -8.43 16 26 C 0.08 1.04 10.57 59.85 0.63 1.67 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.22 8.14 -51.94 -0.42 0.79 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.50 3.65 -51.93 -0.19 1.31 16 35 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 36 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.09 1.62 6.86 -51.93 -0.36 1.26 16 38 H 0.12 2.11 8.10 -51.92 -0.42 1.69 16 39 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.18 7.39 -51.93 -0.38 0.79 16 46 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -29.66 375.27 -9.00 -38.66 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.20 Total: 6.94 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -3.43 Total: -11.44 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.15 Total: -41.06 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.26 Total: 15.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.66 -9.00 -38.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182265120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.220 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds