Wall clock time and date at job start Tue Mar 31 2020 11:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 C 1.53006 * 109.46997 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46935 * 179.97438 * 4 3 2 6 6 C 1.37094 * 120.00153 * 263.61513 * 5 4 3 7 7 H 1.07997 * 120.00059 * 142.25855 * 6 5 4 8 8 C 1.38958 * 119.99870 * 322.25495 * 6 5 4 9 9 N 1.31407 * 119.99749 * 157.62430 * 8 6 5 10 10 Si 1.86800 * 119.99717 * 337.62811 * 8 6 5 11 11 H 1.48491 * 109.47218 * 95.70347 * 10 8 6 12 12 H 1.48502 * 109.46931 * 215.70102 * 10 8 6 13 13 H 1.48500 * 109.47307 * 335.69974 * 10 8 6 14 14 C 1.34783 * 119.99585 * 83.61212 * 5 4 3 15 15 O 1.21286 * 120.00145 * 0.02562 * 14 5 4 16 16 C 1.50700 * 119.99508 * 179.97438 * 14 5 4 17 17 C 1.50700 * 109.46922 * 180.02562 * 16 14 5 18 18 C 1.34238 * 125.03027 * 85.00342 * 17 16 14 19 19 C 1.46491 * 106.99404 * 179.97438 * 18 17 16 20 20 C 1.39629 * 134.03094 * 179.97438 * 19 18 17 21 21 C 1.36630 * 119.76421 * 180.02562 * 20 19 18 22 22 C 1.38824 * 120.52674 * 359.97438 * 21 20 19 23 23 C 1.37754 * 120.66792 * 0.24759 * 22 21 20 24 24 C 1.39121 * 119.77743 * 359.50936 * 23 22 21 25 25 N 1.36826 * 125.03746 * 264.99578 * 17 16 14 26 26 C 1.46504 * 125.06047 * 359.97438 * 25 17 16 27 27 H 1.09002 * 109.46916 * 300.00356 * 1 2 3 28 28 H 1.08998 * 109.46881 * 60.00223 * 1 2 3 29 29 H 1.09002 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46916 * 239.99644 * 2 1 3 31 31 H 1.09001 * 109.47311 * 120.00057 * 2 1 3 32 32 H 1.08987 * 109.47352 * 59.99981 * 3 2 1 33 33 H 1.08998 * 109.46974 * 299.99720 * 3 2 1 34 34 H 1.08994 * 109.47066 * 59.99655 * 4 3 2 35 35 H 1.08998 * 109.46678 * 299.99470 * 4 3 2 36 36 H 0.97006 * 119.99588 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47344 * 59.99637 * 16 14 5 38 38 H 1.09007 * 109.47250 * 300.00182 * 16 14 5 39 39 H 1.07997 * 126.50807 * 359.97438 * 18 17 16 40 40 H 1.07997 * 120.11950 * 359.97438 * 20 19 18 41 41 H 1.07998 * 119.73397 * 179.97438 * 21 20 19 42 42 H 1.08007 * 119.66721 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.10955 * 179.68046 * 23 22 21 44 44 H 1.08993 * 109.46991 * 269.99675 * 26 25 17 45 45 H 1.08997 * 109.47003 * 29.99909 * 26 25 17 46 46 H 1.08997 * 109.47021 * 149.99667 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.4110 3.4255 -1.1815 7 1 4.1883 4.4699 -1.3426 8 6 5.0548 2.6918 -2.1704 9 7 5.0065 3.0912 -3.4214 10 14 5.9890 1.1377 -1.7215 11 1 5.1143 -0.0437 -1.9315 12 1 7.1949 1.0196 -2.5800 13 1 6.4005 1.2018 -0.2961 14 6 4.1611 3.5025 1.1586 15 8 3.8497 2.9699 2.2027 16 6 4.6641 4.9231 1.1580 17 6 4.6835 5.4497 2.5699 18 6 5.6860 5.2718 3.4448 19 6 5.2947 5.9435 4.6865 20 6 5.9012 6.1084 5.9333 21 6 5.2569 6.8090 6.9136 22 6 4.0039 7.3590 6.6798 23 6 3.3855 7.2046 5.4586 24 6 4.0254 6.4994 4.4444 25 7 3.6822 6.1799 3.1498 26 6 2.4323 6.5664 2.4906 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.9330 0.9286 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 5.4563 2.5792 -4.1117 37 1 4.0054 5.5415 0.5482 38 1 5.6729 4.9513 0.7461 39 1 6.6063 4.7354 3.2671 40 1 6.8756 5.6829 6.1225 41 1 5.7263 6.9358 7.8779 42 1 3.5070 7.9099 7.4648 43 1 2.4084 7.6320 5.2882 44 1 2.5642 7.5297 1.9980 45 1 2.1642 5.8132 1.7498 46 1 1.6386 6.6440 3.2336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182265120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:57 Heat of formation + Delta-G solvation = 6.808780 kcal Electronic energy + Delta-G solvation = -26217.093950 eV Core-core repulsion = 22685.499622 eV Total energy + Delta-G solvation = -3531.594329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.33364 -40.67482 -38.09008 -37.21502 -35.66435 -33.89864 -33.86966 -32.49169 -31.11350 -30.11830 -28.18096 -27.01210 -26.66423 -24.82964 -22.85101 -22.42018 -22.14589 -21.21531 -20.50122 -18.79634 -18.11250 -17.85604 -17.31285 -17.11750 -16.33143 -16.25743 -15.99317 -15.85687 -15.51335 -15.06048 -14.76049 -14.68815 -14.55252 -14.32553 -13.98163 -13.85642 -13.75408 -13.52802 -13.40889 -13.19028 -13.02506 -12.92664 -12.81804 -12.34778 -12.19571 -12.11753 -12.04696 -11.94621 -11.81706 -11.68959 -11.47762 -11.10620 -10.58297 -10.46516 -9.76572 -8.98092 -8.55108 -8.49738 -6.15106 0.23615 0.77189 1.16667 1.30680 1.41345 1.67647 1.83657 1.94988 2.15921 2.63124 2.95990 3.05572 3.65106 3.78725 3.88946 3.92720 4.00761 4.17990 4.18778 4.24082 4.27544 4.34404 4.35097 4.40605 4.52559 4.53616 4.59604 4.66796 4.70619 4.73097 4.76437 4.86523 4.89616 5.01191 5.02077 5.11422 5.19488 5.22251 5.31385 5.37824 5.46018 5.60537 5.74343 5.90863 5.98625 6.02601 6.23073 6.31657 6.45354 6.93076 7.37845 7.75480 8.58752 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.003849 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.005902 B = 7272.668078 C = 8124.304572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.099 3.901 5 N -0.471 5.471 6 C -0.346 4.346 7 H 0.091 0.909 8 C 0.040 3.960 9 N -0.888 5.888 10 Si 0.915 3.085 11 H -0.259 1.259 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.479 3.521 15 O -0.609 6.609 16 C -0.055 4.055 17 C 0.104 3.896 18 C -0.220 4.220 19 C -0.134 4.134 20 C -0.088 4.088 21 C -0.151 4.151 22 C -0.103 4.103 23 C -0.138 4.138 24 C 0.077 3.923 25 N -0.485 5.485 26 C 0.074 3.926 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.280 0.720 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.137 0.863 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 4.777 12.179 13.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.023 4.023 5 N -0.192 5.192 6 C -0.473 4.473 7 H 0.109 0.891 8 C -0.166 4.166 9 N -0.524 5.524 10 Si 0.741 3.259 11 H -0.185 1.185 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.269 3.731 15 O -0.494 6.494 16 C -0.095 4.095 17 C -0.004 4.004 18 C -0.245 4.245 19 C -0.138 4.138 20 C -0.107 4.107 21 C -0.170 4.170 22 C -0.121 4.121 23 C -0.158 4.158 24 C -0.029 4.029 25 N -0.168 5.168 26 C -0.067 4.067 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.873 4.557 12.252 13.951 hybrid contribution 0.717 -0.838 -0.692 1.302 sum -4.156 3.719 11.559 12.834 Atomic orbital electron populations 1.21706 0.94102 1.02457 1.01821 1.21485 0.97405 0.94994 1.02064 1.21732 0.94105 0.98253 1.01226 1.21723 0.95790 0.84421 1.00404 1.43853 1.57151 1.12262 1.05928 1.18981 1.39097 0.98012 0.91211 0.89136 1.25737 0.96189 1.00211 0.94420 1.69815 1.40614 1.41662 1.00338 0.86314 0.79415 0.81327 0.78836 1.18515 1.20873 1.19644 1.20621 0.80474 0.89312 0.82664 1.90572 1.55057 1.71521 1.32260 1.20011 1.05183 0.93156 0.91178 1.19848 0.89026 0.96510 0.95022 1.21538 1.01307 1.08671 0.92979 1.19488 0.95747 1.03085 0.95504 1.20536 1.00168 0.98935 0.91056 1.20955 0.96184 1.00015 0.99799 1.21182 0.95326 0.99571 0.96069 1.20335 1.01040 1.02288 0.92165 1.18636 0.96193 1.02206 0.85855 1.43857 1.16679 1.46026 1.10209 1.22081 0.83899 1.01793 0.98946 0.92875 0.92667 0.91000 0.91864 0.91794 0.93129 0.92404 0.91809 0.92389 0.90954 0.87871 0.86519 0.84174 0.85200 0.83334 0.82642 0.84495 0.89344 0.91125 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.91 71.98 0.71 -2.83 16 2 C -0.12 -3.67 5.93 30.59 0.18 -3.49 16 3 C -0.11 -4.34 5.49 30.59 0.17 -4.17 16 4 C 0.10 4.32 3.93 86.38 0.34 4.66 16 5 N -0.47 -22.06 2.18 -635.53 -1.39 -23.45 16 6 C -0.35 -17.22 9.05 84.04 0.76 -16.46 16 7 H 0.09 4.67 7.23 -2.91 -0.02 4.65 16 8 C 0.04 2.03 5.26 84.93 0.45 2.47 16 9 N -0.89 -47.21 13.96 21.66 0.30 -46.91 16 10 Si 0.92 40.79 25.06 68.60 1.72 42.51 16 11 H -0.26 -10.88 6.69 99.48 0.67 -10.22 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 14 C 0.48 21.92 7.58 87.66 0.66 22.58 16 15 O -0.61 -30.64 15.72 -3.05 -0.05 -30.69 16 16 C -0.06 -2.14 4.39 29.10 0.13 -2.02 16 17 C 0.10 3.93 5.32 40.87 0.22 4.15 16 18 C -0.22 -8.35 10.95 23.51 0.26 -8.09 16 19 C -0.13 -4.64 6.37 -20.20 -0.13 -4.77 16 20 C -0.09 -2.49 10.05 22.23 0.22 -2.27 16 21 C -0.15 -3.39 9.97 22.03 0.22 -3.17 16 22 C -0.10 -2.19 10.01 22.30 0.22 -1.97 16 23 C -0.14 -3.51 9.96 22.37 0.22 -3.28 16 24 C 0.08 2.53 6.81 39.03 0.27 2.79 16 25 N -0.48 -16.32 3.18 -524.71 -1.67 -17.99 16 26 C 0.07 1.90 10.57 127.77 1.35 3.25 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.81 3.65 -2.39 -0.01 2.80 16 35 H 0.06 2.56 7.62 -2.39 -0.02 2.54 16 36 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 37 H 0.10 3.72 6.86 -2.39 -0.02 3.70 16 38 H 0.12 4.44 8.10 -2.38 -0.02 4.42 16 39 H 0.14 5.07 8.06 -2.91 -0.02 5.05 16 40 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 41 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.07 1.99 7.39 -2.39 -0.02 1.98 16 46 H 0.10 2.05 8.10 -2.39 -0.02 2.03 16 Total: -1.00 -64.44 375.27 6.09 -58.35 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.92 Total: 30.80 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 6.25 Total: -12.62 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -2.75 Total: -88.35 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.05 Total: -30.69 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.72 Total: 42.51 kcal Total: -64.44 6.09 -58.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182265120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.158 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds