Wall clock time and date at job start Tue Mar 31 2020 10:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47116 * 2 1 4 4 C 1.52998 * 109.47197 * 239.99826 * 2 1 3 5 5 C 1.50696 * 109.47395 * 60.00081 * 4 2 1 6 6 C 1.38238 * 120.00459 * 269.72996 * 5 4 2 7 7 C 1.38231 * 120.00128 * 179.76292 * 6 5 4 8 8 C 1.38234 * 120.00000 * 0.50409 * 7 6 5 9 9 C 1.38239 * 119.99993 * 359.74559 * 8 7 6 10 10 C 1.38226 * 119.99714 * 0.02562 * 9 8 7 11 11 C 1.50705 * 109.46826 * 120.00189 * 2 1 3 12 12 O 1.21279 * 119.99966 * 130.68872 * 11 2 1 13 13 N 1.34772 * 119.99905 * 310.68184 * 11 2 1 14 14 C 1.46497 * 120.00076 * 355.91484 * 13 11 2 15 15 C 1.50699 * 109.47423 * 96.95799 * 14 13 11 16 16 H 1.08008 * 119.99897 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00444 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99845 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00267 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47136 * 59.99300 * 19 17 15 21 21 H 1.48499 * 109.47191 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46839 * 299.99560 * 19 17 15 23 23 C 1.46505 * 119.99810 * 175.91168 * 13 11 2 24 24 C 1.52997 * 109.47143 * 94.11199 * 23 13 11 25 25 C 1.47193 * 109.47102 * 184.86889 * 24 23 13 26 26 N 7.00945 * 110.79450 * 106.49133 * 2 1 3 27 27 H 1.09003 * 109.47083 * 79.82783 * 1 2 3 28 28 H 1.08996 * 109.47201 * 319.82304 * 1 2 3 29 29 H 1.09002 * 109.47324 * 199.82189 * 1 2 3 30 30 H 1.09000 * 109.47069 * 78.26395 * 3 2 1 31 31 H 1.09005 * 109.47281 * 198.26103 * 3 2 1 32 32 H 1.08994 * 109.47491 * 318.26021 * 3 2 1 33 33 H 1.09004 * 109.47530 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.47563 * 300.00201 * 4 2 1 35 35 H 1.08004 * 119.99735 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.99844 * 180.23498 * 7 6 5 37 37 H 1.07998 * 119.99856 * 179.72845 * 8 7 6 38 38 H 1.08002 * 119.99511 * 179.97438 * 9 8 7 39 39 H 1.08004 * 119.99847 * 179.97438 * 10 9 8 40 40 H 1.09004 * 109.47125 * 216.95650 * 14 13 11 41 41 H 1.08999 * 109.47303 * 336.95310 * 14 13 11 42 42 H 0.96998 * 120.00286 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.46893 * 214.10932 * 23 13 11 44 44 H 1.08993 * 109.47057 * 334.10258 * 23 13 11 45 45 H 1.09007 * 109.46797 * 304.86907 * 24 23 13 46 46 H 1.09000 * 109.47323 * 64.86617 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0110 -2.4797 6 6 0.3326 -0.3800 -3.0474 7 6 -0.1304 0.2749 -4.1733 8 6 0.6167 1.2918 -4.7376 9 6 1.8244 1.6575 -4.1729 10 6 2.2850 1.0058 -3.0443 11 6 2.0323 -0.7105 1.2305 12 8 2.8800 -1.5719 1.1297 13 7 1.5395 -0.3884 2.4429 14 6 0.5822 0.7125 2.5756 15 6 -0.8195 0.1595 2.5978 16 1 -0.9811 -0.9056 2.5202 17 6 -1.8957 1.0132 2.7159 18 7 -1.6989 2.3102 2.8098 19 14 -3.6332 0.3278 2.7426 20 1 -3.7821 -0.5988 3.8935 21 1 -4.6035 1.4438 2.8773 22 1 -3.8950 -0.4066 1.4788 23 6 1.9612 -1.1394 3.6280 24 6 3.1344 -0.4202 4.2968 25 6 3.6334 -1.2329 5.4180 26 7 4.0185 -1.8602 6.2833 27 1 -0.3633 0.1815 -1.0115 28 1 -0.3633 0.7852 0.6630 29 1 -0.3634 -0.9668 0.3485 30 1 1.9640 1.8547 1.0062 31 1 3.0813 1.4597 -0.3220 32 1 1.4382 2.0406 -0.6841 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2493 35 1 -0.2489 -1.1778 -2.6093 36 1 -1.0738 -0.0110 -4.6145 37 1 0.2570 1.8005 -5.6197 38 1 2.4082 2.4518 -4.6141 39 1 3.2288 1.2911 -2.6034 40 1 0.7748 1.2516 3.5032 41 1 0.6912 1.3926 1.7309 42 1 -2.4560 2.9108 2.8933 43 1 1.1297 -1.2082 4.3294 44 1 2.2705 -2.1417 3.3319 45 1 3.9334 -0.2745 3.5697 46 1 2.8017 0.5484 4.6700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182604508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:16 Heat of formation + Delta-G solvation = 16.181201 kcal Electronic energy + Delta-G solvation = -26813.801200 eV Core-core repulsion = 23282.613290 eV Total energy + Delta-G solvation = -3531.187910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27164 -38.92984 -36.73079 -35.52392 -35.27787 -32.93550 -31.59168 -30.82048 -30.28736 -27.55543 -26.74749 -26.14503 -24.35778 -23.19871 -22.30430 -21.83873 -20.21078 -18.07458 -17.40473 -16.62480 -16.44818 -15.99686 -15.68841 -15.04410 -14.99109 -14.64800 -14.45425 -14.35717 -13.93990 -13.41756 -13.28170 -13.10457 -12.84196 -12.66953 -12.51347 -12.32823 -12.26887 -12.10745 -11.80243 -11.69450 -11.40155 -11.36954 -11.24816 -10.98948 -10.88638 -10.76428 -10.72395 -10.62985 -10.30543 -10.16868 -9.82011 -9.54127 -8.93712 -8.70847 -8.57428 -8.46548 -7.89348 -6.25171 -4.27957 1.51656 1.55150 2.86537 2.96125 3.20190 3.25664 3.26527 3.33630 3.68350 3.96544 4.27396 4.39956 4.93167 4.99694 5.08231 5.11508 5.19676 5.27600 5.30054 5.34360 5.42766 5.50072 5.66383 5.67927 5.69041 5.82181 5.99422 6.08736 6.10625 6.16265 6.20898 6.27934 6.32192 6.43956 6.51483 6.60777 6.64161 6.65260 6.71945 6.81893 6.89278 7.10419 7.16617 7.37613 7.55647 7.68181 7.72282 7.96461 8.22243 8.69936 8.89672 9.35010 10.81122 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.005169 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.366678 B = 5415.303670 C = 7551.553030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.058 4.058 5 C -0.064 4.064 6 C -0.111 4.111 7 C -0.122 4.122 8 C -0.131 4.131 9 C -0.123 4.123 10 C -0.115 4.115 11 C 0.527 3.473 12 O -0.572 6.572 13 N -0.592 5.592 14 C 0.216 3.784 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.125 3.875 24 C -0.045 4.045 25 C 0.222 3.778 26 N -0.452 5.452 27 H 0.047 0.953 28 H 0.121 0.879 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 1.015 -10.542 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.096 4.096 5 C -0.064 4.064 6 C -0.129 4.129 7 C -0.140 4.140 8 C -0.149 4.149 9 C -0.141 4.141 10 C -0.133 4.133 11 C 0.315 3.685 12 O -0.452 6.452 13 N -0.322 5.322 14 C 0.097 3.903 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 C 0.000 4.000 24 C -0.086 4.086 25 C -0.096 4.096 26 N -0.130 5.130 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.126 0.874 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.503 -0.170 -9.257 10.771 hybrid contribution -1.372 0.034 -0.237 1.393 sum 4.131 -0.136 -9.495 10.355 Atomic orbital electron populations 1.22750 0.90676 1.05789 1.02556 1.20540 0.98966 0.95810 0.91474 1.22077 1.00181 0.94371 1.03469 1.20489 1.00833 0.98350 0.89912 1.19889 0.94521 0.96029 0.95972 1.21114 0.95805 1.00303 0.95673 1.21106 0.99664 0.96730 0.96475 1.21058 0.95431 0.98117 1.00269 1.21078 0.96535 0.99936 0.96536 1.21065 1.00035 0.96173 0.96022 1.20544 0.80640 0.82393 0.84893 1.90597 1.33434 1.34329 1.86883 1.48129 1.43946 1.35197 1.04887 1.20080 0.86452 0.84367 0.99429 1.21361 0.90496 0.93940 1.51020 0.92010 1.24849 0.99065 0.94740 0.95043 1.69882 1.31755 1.02002 1.49123 0.86668 0.84075 0.78626 0.78872 1.20230 1.21216 1.20019 1.21106 0.95218 0.95413 0.88299 1.19782 1.00192 0.97751 0.90901 1.29146 0.92934 0.93570 0.93968 1.81171 1.09854 1.10158 1.11780 0.93387 0.86055 0.92727 0.90716 0.93137 0.91585 0.90637 0.90907 0.85994 0.86458 0.86666 0.86518 0.86229 0.94855 0.91571 0.92392 0.89336 0.90171 0.87441 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 6.72 37.16 0.25 -2.64 16 2 C -0.06 -1.06 0.52 -155.66 -0.08 -1.14 16 3 C -0.14 -2.15 6.88 37.15 0.26 -1.90 16 4 C -0.06 -0.86 3.74 -27.89 -0.10 -0.97 16 5 C -0.06 -0.87 4.16 -104.62 -0.44 -1.31 16 6 C -0.11 -1.48 7.64 -39.58 -0.30 -1.78 16 7 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 8 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 9 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 10 C -0.11 -1.43 8.39 -39.59 -0.33 -1.76 16 11 C 0.53 9.54 6.33 -10.98 -0.07 9.47 16 12 O -0.57 -11.38 15.53 5.56 0.09 -11.29 16 13 N -0.59 -10.51 2.45 -175.06 -0.43 -10.94 16 14 C 0.22 4.31 4.23 -5.20 -0.02 4.29 16 15 C -0.53 -11.96 6.14 -34.44 -0.21 -12.17 16 16 H 0.06 1.44 7.60 -52.48 -0.40 1.04 16 17 C 0.07 1.58 5.19 -17.82 -0.09 1.48 16 18 N -0.89 -22.18 13.29 55.43 0.74 -21.44 16 19 Si 0.89 19.22 29.54 -169.99 -5.02 14.19 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 C 0.13 1.96 5.39 -4.04 -0.02 1.94 16 24 C -0.04 -0.58 6.03 -29.52 -0.18 -0.76 16 25 C 0.22 3.21 15.43 -20.76 -0.32 2.89 16 26 N -0.45 -7.60 18.54 42.15 0.78 -6.82 16 27 H 0.05 0.80 4.90 -51.93 -0.25 0.54 16 28 H 0.12 2.49 3.75 -51.93 -0.19 2.30 16 29 H 0.05 1.04 7.31 -51.93 -0.38 0.66 16 30 H 0.07 1.18 5.55 -51.93 -0.29 0.90 16 31 H 0.05 0.67 7.61 -51.93 -0.40 0.27 16 32 H 0.07 0.98 7.37 -51.93 -0.38 0.60 16 33 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 34 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.12 1.57 7.83 -52.48 -0.41 1.16 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.34 7.66 -52.48 -0.40 0.93 16 40 H 0.03 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.07 1.34 2.94 -51.93 -0.15 1.19 16 42 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 43 H 0.09 1.40 8.10 -51.93 -0.42 0.98 16 44 H 0.08 1.31 7.36 -51.93 -0.38 0.93 16 45 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -26.74 368.47 -7.72 -34.46 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.56 Total: 6.16 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.86 Total: -9.87 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 1.09 Total: -39.20 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -26.74 -7.72 -34.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182604508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.636 kcal (2) G-P(sol) polarization free energy of solvation -26.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds