Wall clock time and date at job start Tue Mar 31 2020 10:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47116 * 2 1 4 4 C 1.52998 * 109.47197 * 239.99826 * 2 1 3 5 5 C 1.50696 * 109.47395 * 60.00081 * 4 2 1 6 6 C 1.38238 * 120.00459 * 269.72996 * 5 4 2 7 7 C 1.38231 * 120.00128 * 179.76292 * 6 5 4 8 8 C 1.38234 * 120.00000 * 0.50409 * 7 6 5 9 9 C 1.38239 * 119.99993 * 359.74559 * 8 7 6 10 10 C 1.38226 * 119.99714 * 0.02562 * 9 8 7 11 11 C 1.50705 * 109.46826 * 120.00189 * 2 1 3 12 12 O 1.21279 * 119.99966 * 130.68872 * 11 2 1 13 13 N 1.34772 * 119.99905 * 310.68184 * 11 2 1 14 14 C 1.46497 * 120.00076 * 355.91484 * 13 11 2 15 15 C 1.50699 * 109.47423 * 96.95799 * 14 13 11 16 16 H 1.08008 * 119.99897 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00444 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99845 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00267 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47136 * 59.99300 * 19 17 15 21 21 H 1.48499 * 109.47191 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46839 * 299.99560 * 19 17 15 23 23 C 1.46505 * 119.99810 * 175.91168 * 13 11 2 24 24 C 1.52997 * 109.47143 * 94.11199 * 23 13 11 25 25 C 1.47193 * 109.47102 * 184.86889 * 24 23 13 26 26 N 7.00945 * 110.79450 * 106.49133 * 2 1 3 27 27 H 1.09003 * 109.47083 * 79.82783 * 1 2 3 28 28 H 1.08996 * 109.47201 * 319.82304 * 1 2 3 29 29 H 1.09002 * 109.47324 * 199.82189 * 1 2 3 30 30 H 1.09000 * 109.47069 * 78.26395 * 3 2 1 31 31 H 1.09005 * 109.47281 * 198.26103 * 3 2 1 32 32 H 1.08994 * 109.47491 * 318.26021 * 3 2 1 33 33 H 1.09004 * 109.47530 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.47563 * 300.00201 * 4 2 1 35 35 H 1.08004 * 119.99735 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.99844 * 180.23498 * 7 6 5 37 37 H 1.07998 * 119.99856 * 179.72845 * 8 7 6 38 38 H 1.08002 * 119.99511 * 179.97438 * 9 8 7 39 39 H 1.08004 * 119.99847 * 179.97438 * 10 9 8 40 40 H 1.09004 * 109.47125 * 216.95650 * 14 13 11 41 41 H 1.08999 * 109.47303 * 336.95310 * 14 13 11 42 42 H 0.96998 * 120.00286 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.46893 * 214.10932 * 23 13 11 44 44 H 1.08993 * 109.47057 * 334.10258 * 23 13 11 45 45 H 1.09007 * 109.46797 * 304.86907 * 24 23 13 46 46 H 1.09000 * 109.47323 * 64.86617 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0110 -2.4797 6 6 0.3326 -0.3800 -3.0474 7 6 -0.1304 0.2749 -4.1733 8 6 0.6167 1.2918 -4.7376 9 6 1.8244 1.6575 -4.1729 10 6 2.2850 1.0058 -3.0443 11 6 2.0323 -0.7105 1.2305 12 8 2.8800 -1.5719 1.1297 13 7 1.5395 -0.3884 2.4429 14 6 0.5822 0.7125 2.5756 15 6 -0.8195 0.1595 2.5978 16 1 -0.9811 -0.9056 2.5202 17 6 -1.8957 1.0132 2.7159 18 7 -1.6989 2.3102 2.8098 19 14 -3.6332 0.3278 2.7426 20 1 -3.7821 -0.5988 3.8935 21 1 -4.6035 1.4438 2.8773 22 1 -3.8950 -0.4066 1.4788 23 6 1.9612 -1.1394 3.6280 24 6 3.1344 -0.4202 4.2968 25 6 3.6334 -1.2329 5.4180 26 7 4.0185 -1.8602 6.2833 27 1 -0.3633 0.1815 -1.0115 28 1 -0.3633 0.7852 0.6630 29 1 -0.3634 -0.9668 0.3485 30 1 1.9640 1.8547 1.0062 31 1 3.0813 1.4597 -0.3220 32 1 1.4382 2.0406 -0.6841 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2493 35 1 -0.2489 -1.1778 -2.6093 36 1 -1.0738 -0.0110 -4.6145 37 1 0.2570 1.8005 -5.6197 38 1 2.4082 2.4518 -4.6141 39 1 3.2288 1.2911 -2.6034 40 1 0.7748 1.2516 3.5032 41 1 0.6912 1.3926 1.7309 42 1 -2.4560 2.9108 2.8933 43 1 1.1297 -1.2082 4.3294 44 1 2.2705 -2.1417 3.3319 45 1 3.9334 -0.2745 3.5697 46 1 2.8017 0.5484 4.6700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182604508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:15 Heat of formation + Delta-G solvation = 5.412307 kcal Electronic energy + Delta-G solvation = -26814.268174 eV Core-core repulsion = 23282.613290 eV Total energy + Delta-G solvation = -3531.654884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61713 -39.99670 -37.98157 -37.01209 -36.56755 -34.61498 -32.84711 -31.74119 -31.45547 -29.20546 -28.00599 -27.40247 -25.67527 -24.88469 -23.24002 -22.99467 -21.39164 -19.48605 -18.71401 -18.28809 -17.40988 -17.35752 -17.17029 -16.28242 -16.13794 -16.00653 -15.71789 -15.63840 -15.25986 -14.68195 -14.46574 -14.37741 -14.17602 -13.87462 -13.71621 -13.65826 -13.48834 -13.45553 -13.18932 -13.05128 -12.84013 -12.74061 -12.59880 -12.52779 -12.39894 -12.02845 -11.79484 -11.76635 -11.71966 -11.60556 -11.48850 -11.03650 -10.52360 -10.26564 -9.65513 -9.44415 -9.42848 -8.08652 -6.13450 0.57032 0.62671 1.45816 1.50175 1.53579 1.63192 1.77877 1.86354 2.32758 2.50545 3.00407 3.18715 3.24173 3.65717 3.98375 4.05548 4.09198 4.16088 4.24747 4.26174 4.28767 4.42301 4.51239 4.56202 4.65377 4.76783 4.87064 4.90582 4.94474 4.99631 5.01450 5.05837 5.16783 5.22522 5.26050 5.30911 5.34500 5.37486 5.53303 5.70146 5.74003 5.76287 5.87512 5.90555 6.00482 6.20785 6.25329 6.54433 6.66879 6.93123 7.38568 7.53033 8.96187 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.005169 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.366678 B = 5415.303670 C = 7551.553030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.136 4.136 4 C -0.049 4.049 5 C -0.079 4.079 6 C -0.129 4.129 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.125 4.125 10 C -0.122 4.122 11 C 0.524 3.476 12 O -0.589 6.589 13 N -0.591 5.591 14 C 0.227 3.773 15 C -0.522 4.522 16 H 0.050 0.950 17 C 0.032 3.968 18 N -0.913 5.913 19 Si 0.930 3.070 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.122 3.878 24 C -0.030 4.030 25 C 0.245 3.755 26 N -0.491 5.491 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.028 0.972 41 H 0.069 0.931 42 H 0.264 0.736 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.117 1.968 -11.935 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.194 4.194 4 C -0.087 4.087 5 C -0.079 4.079 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.142 4.142 10 C -0.139 4.139 11 C 0.313 3.687 12 O -0.471 6.471 13 N -0.320 5.320 14 C 0.107 3.893 15 C -0.561 4.561 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.553 5.553 19 Si 0.758 3.242 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.003 4.003 24 C -0.071 4.071 25 C -0.072 4.072 26 N -0.169 5.169 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.046 0.954 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.138 0.862 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.011 0.769 -10.643 12.248 hybrid contribution -1.541 -0.299 0.130 1.575 sum 4.470 0.471 -10.513 11.434 Atomic orbital electron populations 1.22531 0.91990 1.03563 1.02427 1.20529 0.97664 0.96852 0.91411 1.22000 1.01357 0.93032 1.02964 1.20357 1.00740 0.97624 0.89963 1.19815 0.95156 0.96985 0.95907 1.21206 0.96060 1.00821 0.96637 1.21369 1.00506 0.96826 0.96084 1.21424 0.95200 0.97578 1.00790 1.21423 0.96728 1.00126 0.95968 1.21256 1.00392 0.95823 0.96471 1.20864 0.80328 0.82151 0.85348 1.90587 1.34331 1.35078 1.87121 1.48070 1.43486 1.34839 1.05610 1.19846 0.85590 0.84714 0.99123 1.21502 0.91855 0.93226 1.49523 0.93193 1.25278 1.01200 0.94948 0.95406 1.69941 1.32106 1.02578 1.50639 0.86028 0.81712 0.77924 0.78536 1.20500 1.21354 1.20025 1.21163 0.96194 0.95264 0.87714 1.19710 0.99311 0.97698 0.90379 1.29272 0.91856 0.92679 0.93431 1.81198 1.11218 1.11324 1.13151 0.92337 0.88445 0.94668 0.91649 0.91169 0.91444 0.90494 0.92251 0.86568 0.84860 0.84171 0.83988 0.85059 0.95416 0.91337 0.92636 0.89697 0.90891 0.86166 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 6.72 71.98 0.48 -4.85 16 2 C -0.06 -1.97 0.52 -52.93 -0.03 -2.00 16 3 C -0.14 -3.89 6.88 71.98 0.50 -3.39 16 4 C -0.05 -1.43 3.74 29.85 0.11 -1.32 16 5 C -0.08 -2.06 4.16 -19.87 -0.08 -2.14 16 6 C -0.13 -3.35 7.64 22.27 0.17 -3.18 16 7 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 8 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 9 C -0.12 -2.48 10.05 22.27 0.22 -2.25 16 10 C -0.12 -2.76 8.39 22.27 0.19 -2.57 16 11 C 0.52 18.70 6.33 87.66 0.55 19.26 16 12 O -0.59 -23.09 15.53 -3.03 -0.05 -23.14 16 13 N -0.59 -20.68 2.45 -826.16 -2.03 -22.70 16 14 C 0.23 9.00 4.23 85.63 0.36 9.36 16 15 C -0.52 -23.62 6.14 25.60 0.16 -23.46 16 16 H 0.05 2.35 7.60 -2.91 -0.02 2.33 16 17 C 0.03 1.53 5.19 84.66 0.44 1.97 16 18 N -0.91 -45.39 13.29 21.45 0.28 -45.10 16 19 Si 0.93 39.31 29.54 68.60 2.03 41.34 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 C 0.12 3.73 5.39 86.38 0.47 4.20 16 24 C -0.03 -0.72 6.03 28.79 0.17 -0.55 16 25 C 0.24 6.81 15.43 89.44 1.38 8.19 16 26 N -0.49 -16.17 18.54 20.00 0.37 -15.79 16 27 H 0.06 1.95 4.90 -2.39 -0.01 1.94 16 28 H 0.10 4.01 3.75 -2.39 -0.01 4.01 16 29 H 0.03 1.36 7.31 -2.39 -0.02 1.34 16 30 H 0.06 1.99 5.55 -2.39 -0.01 1.97 16 31 H 0.07 1.71 7.61 -2.38 -0.02 1.69 16 32 H 0.07 1.91 7.37 -2.39 -0.02 1.89 16 33 H 0.08 2.20 7.92 -2.38 -0.02 2.18 16 34 H 0.06 1.86 8.08 -2.38 -0.02 1.84 16 35 H 0.12 3.02 7.83 -2.91 -0.02 3.00 16 36 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.13 2.60 7.66 -2.91 -0.02 2.57 16 40 H 0.03 1.14 8.12 -2.38 -0.02 1.12 16 41 H 0.07 2.75 2.94 -2.39 -0.01 2.75 16 42 H 0.26 12.84 8.31 -92.71 -0.77 12.07 16 43 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 44 H 0.07 2.36 7.36 -2.39 -0.02 2.34 16 45 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 46 H 0.13 2.75 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -56.19 368.47 7.14 -49.06 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.99 Total: 24.16 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.54 Total: -7.81 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.37 Total: -83.60 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -56.19 7.14 -49.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182604508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.469 kcal (2) G-P(sol) polarization free energy of solvation -56.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds