Wall clock time and date at job start Tue Mar 31 2020 11:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.46868 * 2 1 4 4 C 1.52997 * 109.46868 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46652 * 179.97438 * 4 3 2 6 6 C 1.37095 * 119.99614 * 269.99674 * 5 4 3 7 7 H 1.08005 * 119.99463 * 144.56839 * 6 5 4 8 8 C 1.38953 * 120.00392 * 324.56082 * 6 5 4 9 9 N 1.31411 * 119.99728 * 155.71753 * 8 6 5 10 10 Si 1.86798 * 119.99860 * 335.71959 * 8 6 5 11 11 H 1.48502 * 109.46833 * 94.98245 * 10 8 6 12 12 H 1.48499 * 109.47060 * 214.98132 * 10 8 6 13 13 H 1.48497 * 109.47495 * 334.98477 * 10 8 6 14 14 C 1.34773 * 120.00028 * 90.00302 * 5 4 3 15 15 O 1.21290 * 120.00068 * 355.92524 * 14 5 4 16 16 C 1.50703 * 119.99948 * 175.92999 * 14 5 4 17 17 N 1.46504 * 109.46915 * 183.44544 * 16 14 5 18 18 C 1.36832 * 125.05917 * 94.05153 * 17 16 14 19 19 C 1.34244 * 109.92700 * 179.97438 * 18 17 16 20 20 C 1.46488 * 106.99746 * 0.02562 * 19 18 17 21 21 C 1.39623 * 134.02683 * 180.02562 * 20 19 18 22 22 C 1.36634 * 119.75934 * 179.97438 * 21 20 19 23 23 C 1.38828 * 120.52981 * 359.97438 * 22 21 20 24 24 C 1.37749 * 120.66822 * 0.02562 * 23 22 21 25 25 C 1.50695 * 120.11282 * 179.97438 * 24 23 22 26 26 C 1.37683 * 125.06315 * 274.31717 * 17 16 14 27 27 H 1.09000 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47719 * 299.99800 * 1 2 3 29 29 H 1.08999 * 109.47030 * 60.00283 * 1 2 3 30 30 H 1.08993 * 109.47440 * 240.00154 * 2 1 3 31 31 H 1.09007 * 109.47227 * 119.99438 * 2 1 3 32 32 H 1.09002 * 109.46788 * 59.99629 * 3 2 1 33 33 H 1.08999 * 109.47064 * 299.99696 * 3 2 1 34 34 H 1.08993 * 109.47440 * 60.00154 * 4 3 2 35 35 H 1.08999 * 109.47030 * 299.99717 * 4 3 2 36 36 H 0.97003 * 119.99506 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.46953 * 63.45056 * 16 14 5 38 38 H 1.09000 * 109.46857 * 303.44552 * 16 14 5 39 39 H 1.07994 * 125.03714 * 0.02562 * 18 17 16 40 40 H 1.07994 * 126.49635 * 179.97438 * 19 18 17 41 41 H 1.07997 * 120.12198 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.73227 * 179.97438 * 22 21 20 43 43 H 1.07994 * 119.66712 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.47118 * 94.22597 * 25 24 23 45 45 H 1.09002 * 109.47238 * 334.22415 * 25 24 23 46 46 H 1.08997 * 109.47258 * 214.22343 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2871 3.4694 -1.1876 7 1 4.0858 4.5269 -1.2749 8 6 4.7783 2.7632 -2.2788 9 7 4.5611 3.2032 -3.4979 10 14 5.7473 1.1885 -2.0129 11 1 4.8344 0.0219 -2.1180 12 1 6.8094 1.0805 -3.0451 13 1 6.3682 1.2111 -0.6641 14 6 4.2823 3.4600 1.1669 15 8 4.0102 2.9158 2.2162 16 6 4.8709 4.8473 1.1679 17 7 5.0919 5.2829 2.5492 18 6 6.2672 5.1494 3.2370 19 6 6.1321 5.6501 4.4752 20 6 4.7579 6.1442 4.5897 21 6 4.0299 6.7600 5.6097 22 6 2.7266 7.1103 5.3965 23 6 2.1200 6.8594 4.1732 24 6 2.8196 6.2530 3.1533 25 6 2.1487 5.9860 1.8306 26 6 4.1463 5.8830 3.3501 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9287 -0.8890 35 1 3.9329 0.9290 0.8909 36 1 4.9043 2.7103 -4.2597 37 1 4.1825 5.5344 0.6760 38 1 5.8206 4.8394 0.6331 39 1 7.1699 4.7074 2.8420 40 1 6.8923 5.6819 5.2416 41 1 4.4954 6.9587 6.5638 42 1 2.1638 7.5862 6.1859 43 1 1.0892 7.1425 4.0196 44 1 2.3533 6.8097 1.1466 45 1 1.0727 5.8970 1.9805 46 1 2.5347 5.0584 1.4080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184196738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:10 Heat of formation + Delta-G solvation = 25.293098 kcal Electronic energy + Delta-G solvation = -26865.906617 eV Core-core repulsion = 23335.113829 eV Total energy + Delta-G solvation = -3530.792788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08672 -38.94115 -36.83426 -35.64112 -34.13090 -33.37070 -32.07840 -30.95008 -28.97819 -28.57013 -27.34351 -25.58878 -24.88268 -23.19281 -21.81308 -21.28441 -20.78151 -19.72963 -19.02733 -17.40465 -16.60855 -16.20480 -16.05019 -15.28264 -15.02488 -14.89739 -14.55704 -14.40587 -13.82267 -13.69448 -13.44154 -13.12219 -12.92712 -12.90257 -12.64363 -12.50409 -12.39708 -12.23043 -11.94507 -11.85713 -11.57915 -11.47963 -11.18945 -10.99685 -10.89167 -10.74382 -10.66524 -10.49596 -10.48774 -10.19349 -9.86642 -9.35381 -9.15645 -8.73955 -8.01175 -7.77307 -7.17171 -6.69865 -4.26436 1.47179 2.01206 2.90065 3.01723 3.08855 3.15254 3.25938 3.47703 3.95436 4.19603 4.30265 4.74276 5.00890 5.12835 5.22893 5.26922 5.31959 5.34471 5.39895 5.47981 5.60177 5.68448 5.74993 5.80593 5.83465 5.88374 5.93497 6.02212 6.06394 6.10366 6.13608 6.17899 6.18901 6.25692 6.32187 6.32772 6.45440 6.49834 6.72687 6.84092 6.87110 6.90937 7.13017 7.16154 7.19786 7.62940 7.67906 7.84737 8.03188 8.74339 9.13332 9.47962 10.40032 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013723 B = 0.004660 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.870476 B = 6006.815045 C = 6962.761451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.104 3.896 5 N -0.455 5.455 6 C -0.359 4.359 7 H 0.105 0.895 8 C 0.074 3.926 9 N -0.846 5.846 10 Si 0.874 3.126 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.262 1.262 14 C 0.455 3.545 15 O -0.580 6.580 16 C 0.101 3.899 17 N -0.457 5.457 18 C 0.067 3.933 19 C -0.219 4.219 20 C -0.108 4.108 21 C -0.083 4.083 22 C -0.150 4.150 23 C -0.114 4.114 24 C -0.082 4.082 25 C -0.121 4.121 26 C 0.115 3.885 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.278 0.722 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 2.804 8.320 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.019 4.019 5 N -0.176 5.176 6 C -0.485 4.485 7 H 0.122 0.878 8 C -0.135 4.135 9 N -0.480 5.480 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.187 1.187 14 C 0.243 3.757 15 O -0.463 6.463 16 C -0.024 4.024 17 N -0.137 5.137 18 C -0.059 4.059 19 C -0.244 4.244 20 C -0.112 4.112 21 C -0.102 4.102 22 C -0.169 4.169 23 C -0.133 4.133 24 C -0.084 4.084 25 C -0.177 4.177 26 C 0.009 3.991 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.180 0.820 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.802 2.402 8.242 8.772 hybrid contribution 0.572 -0.956 -0.349 1.168 sum -1.230 1.446 7.892 8.117 Atomic orbital electron populations 1.21735 0.96082 1.00919 1.01777 1.21479 0.95688 0.97419 1.01546 1.21827 0.95793 0.96076 1.02620 1.21656 0.94294 0.84887 1.01057 1.43734 1.56519 1.11945 1.05387 1.19058 1.46331 0.96604 0.86507 0.87801 1.25293 0.95501 0.98100 0.94606 1.69793 1.39745 1.40286 0.98162 0.87004 0.80501 0.83272 0.79082 1.19851 1.21290 1.18652 1.20480 0.82577 0.88611 0.84020 1.90630 1.56053 1.68280 1.31377 1.21678 1.04619 0.95992 0.80070 1.43656 1.09188 1.49255 1.11600 1.21762 0.89823 1.01616 0.92716 1.21495 0.95790 1.09985 0.97149 1.19155 0.94496 1.03956 0.93643 1.20124 0.93912 0.98780 0.97378 1.20473 0.95190 1.03886 0.97325 1.20589 0.99203 1.00687 0.92850 1.18897 0.90923 1.01426 0.97141 1.20933 1.00470 1.02224 0.94096 1.18012 0.90887 0.99315 0.90936 0.93251 0.92902 0.92739 0.92303 0.92333 0.91988 0.91119 0.91658 0.91491 0.91199 0.87179 0.86721 0.81961 0.84071 0.86713 0.86677 0.86363 0.91508 0.91620 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.12 -2.37 5.54 -26.73 -0.15 -2.52 16 4 C 0.10 2.22 4.21 -4.04 -0.02 2.20 16 5 N -0.46 -10.27 2.21 -114.81 -0.25 -10.52 16 6 C -0.36 -8.53 9.04 -14.93 -0.14 -8.67 16 7 H 0.10 2.54 7.27 -52.48 -0.38 2.16 16 8 C 0.07 1.82 5.28 -17.47 -0.09 1.73 16 9 N -0.85 -21.71 13.96 55.50 0.77 -20.94 16 10 Si 0.87 19.25 25.11 -169.99 -4.27 14.98 16 11 H -0.27 -5.80 6.62 56.52 0.37 -5.43 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 14 C 0.46 10.05 6.21 -10.99 -0.07 9.98 16 15 O -0.58 -14.29 16.03 5.55 0.09 -14.20 16 16 C 0.10 1.90 4.43 -5.19 -0.02 1.88 16 17 N -0.46 -8.46 2.28 -115.70 -0.26 -8.72 16 18 C 0.07 1.11 11.28 -16.73 -0.19 0.92 16 19 C -0.22 -3.48 11.08 -37.67 -0.42 -3.90 16 20 C -0.11 -1.88 6.37 -105.14 -0.67 -2.55 16 21 C -0.08 -1.26 10.05 -39.64 -0.40 -1.66 16 22 C -0.15 -2.12 9.97 -39.94 -0.40 -2.52 16 23 C -0.11 -1.72 9.65 -39.54 -0.38 -2.11 16 24 C -0.08 -1.42 5.89 -104.47 -0.62 -2.04 16 25 C -0.12 -1.97 8.66 36.00 0.31 -1.66 16 26 C 0.12 2.16 6.71 -83.99 -0.56 1.60 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.07 1.42 3.13 -51.93 -0.16 1.26 16 35 H 0.07 1.44 7.48 -51.93 -0.39 1.06 16 36 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.11 2.00 5.62 -51.93 -0.29 1.70 16 38 H 0.11 2.01 8.04 -51.93 -0.42 1.59 16 39 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 45 H 0.06 0.95 8.06 -51.93 -0.42 0.54 16 46 H 0.07 1.36 4.74 -51.93 -0.25 1.11 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -28.84 368.68 -8.92 -37.76 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.96 Total: 9.11 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.60 Total: -13.03 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.26 Total: -40.18 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.09 Total: -14.20 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.27 Total: 14.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.84 -8.92 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184196738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.054 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds