Wall clock time and date at job start Tue Mar 31 2020 11:33:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53011 * 109.46868 * 2 1
4 4 C 1.52997 * 109.46868 * 179.97438 * 3 2 1
5 5 N 1.46505 * 109.46652 * 179.97438 * 4 3 2
6 6 C 1.37095 * 119.99614 * 269.99674 * 5 4 3
7 7 H 1.08005 * 119.99463 * 144.56839 * 6 5 4
8 8 C 1.38953 * 120.00392 * 324.56082 * 6 5 4
9 9 N 1.31411 * 119.99728 * 155.71753 * 8 6 5
10 10 Si 1.86798 * 119.99860 * 335.71959 * 8 6 5
11 11 H 1.48502 * 109.46833 * 94.98245 * 10 8 6
12 12 H 1.48499 * 109.47060 * 214.98132 * 10 8 6
13 13 H 1.48497 * 109.47495 * 334.98477 * 10 8 6
14 14 C 1.34773 * 120.00028 * 90.00302 * 5 4 3
15 15 O 1.21290 * 120.00068 * 355.92524 * 14 5 4
16 16 C 1.50703 * 119.99948 * 175.92999 * 14 5 4
17 17 N 1.46504 * 109.46915 * 183.44544 * 16 14 5
18 18 C 1.36832 * 125.05917 * 94.05153 * 17 16 14
19 19 C 1.34244 * 109.92700 * 179.97438 * 18 17 16
20 20 C 1.46488 * 106.99746 * 0.02562 * 19 18 17
21 21 C 1.39623 * 134.02683 * 180.02562 * 20 19 18
22 22 C 1.36634 * 119.75934 * 179.97438 * 21 20 19
23 23 C 1.38828 * 120.52981 * 359.97438 * 22 21 20
24 24 C 1.37749 * 120.66822 * 0.02562 * 23 22 21
25 25 C 1.50695 * 120.11282 * 179.97438 * 24 23 22
26 26 C 1.37683 * 125.06315 * 274.31717 * 17 16 14
27 27 H 1.09000 * 109.47091 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.47719 * 299.99800 * 1 2 3
29 29 H 1.08999 * 109.47030 * 60.00283 * 1 2 3
30 30 H 1.08993 * 109.47440 * 240.00154 * 2 1 3
31 31 H 1.09007 * 109.47227 * 119.99438 * 2 1 3
32 32 H 1.09002 * 109.46788 * 59.99629 * 3 2 1
33 33 H 1.08999 * 109.47064 * 299.99696 * 3 2 1
34 34 H 1.08993 * 109.47440 * 60.00154 * 4 3 2
35 35 H 1.08999 * 109.47030 * 299.99717 * 4 3 2
36 36 H 0.97003 * 119.99506 * 179.97438 * 9 8 6
37 37 H 1.08996 * 109.46953 * 63.45056 * 16 14 5
38 38 H 1.09000 * 109.46857 * 303.44552 * 16 14 5
39 39 H 1.07994 * 125.03714 * 0.02562 * 18 17 16
40 40 H 1.07994 * 126.49635 * 179.97438 * 19 18 17
41 41 H 1.07997 * 120.12198 * 359.97438 * 21 20 19
42 42 H 1.08001 * 119.73227 * 179.97438 * 22 21 20
43 43 H 1.07994 * 119.66712 * 180.02562 * 23 22 21
44 44 H 1.09005 * 109.47118 * 94.22597 * 25 24 23
45 45 H 1.09002 * 109.47238 * 334.22415 * 25 24 23
46 46 H 1.08997 * 109.47258 * 214.22343 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5699 1.4426 0.0006
5 7 4.0582 2.8239 0.0000
6 6 4.2871 3.4694 -1.1876
7 1 4.0858 4.5269 -1.2749
8 6 4.7783 2.7632 -2.2788
9 7 4.5611 3.2032 -3.4979
10 14 5.7473 1.1885 -2.0129
11 1 4.8344 0.0219 -2.1180
12 1 6.8094 1.0805 -3.0451
13 1 6.3682 1.2111 -0.6641
14 6 4.2823 3.4600 1.1669
15 8 4.0102 2.9158 2.2162
16 6 4.8709 4.8473 1.1679
17 7 5.0919 5.2829 2.5492
18 6 6.2672 5.1494 3.2370
19 6 6.1321 5.6501 4.4752
20 6 4.7579 6.1442 4.5897
21 6 4.0299 6.7600 5.6097
22 6 2.7266 7.1103 5.3965
23 6 2.1200 6.8594 4.1732
24 6 2.8196 6.2530 3.1533
25 6 2.1487 5.9860 1.8306
26 6 4.1463 5.8830 3.3501
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8933 -0.5138 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 1.6765 1.9564 0.8900
33 1 1.6766 1.9564 -0.8900
34 1 3.9337 0.9287 -0.8890
35 1 3.9329 0.9290 0.8909
36 1 4.9043 2.7103 -4.2597
37 1 4.1825 5.5344 0.6760
38 1 5.8206 4.8394 0.6331
39 1 7.1699 4.7074 2.8420
40 1 6.8923 5.6819 5.2416
41 1 4.4954 6.9587 6.5638
42 1 2.1638 7.5862 6.1859
43 1 1.0892 7.1425 4.0196
44 1 2.3533 6.8097 1.1466
45 1 1.0727 5.8970 1.9805
46 1 2.5347 5.0584 1.4080
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001184196738.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:33:09
Heat of formation + Delta-G solvation = 12.576685 kcal
Electronic energy + Delta-G solvation = -26866.458042 eV
Core-core repulsion = 23335.113829 eV
Total energy + Delta-G solvation = -3531.344213 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.38129 -40.65614 -38.08120 -37.30170 -35.69336 -34.67372 -33.93176 -32.26966
-30.40702 -29.78765 -28.69732 -27.10742 -26.54194 -24.66344 -23.03178 -22.51694
-22.17933 -21.29165 -20.54725 -19.06071 -18.29253 -17.74624 -17.34821 -16.91793
-16.35155 -16.19937 -16.08556 -16.02452 -15.21631 -15.10827 -14.80835 -14.69380
-14.42821 -14.25801 -13.95921 -13.95202 -13.81083 -13.46040 -13.41482 -13.28773
-13.09058 -12.91119 -12.80479 -12.27149 -12.21893 -12.19151 -12.12755 -11.99897
-11.81547 -11.68174 -11.51402 -11.09335 -10.69209 -10.28165 -9.86149 -9.02620
-8.60636 -8.42278 -6.18402 0.26094 0.78973 1.13649 1.28502 1.38024
1.67957 1.74738 1.96952 2.12478 2.58001 2.88577 3.05230 3.78012
3.81204 3.87579 3.97872 4.02260 4.04434 4.05503 4.17896 4.20926
4.28810 4.30315 4.44268 4.48466 4.58352 4.64442 4.70753 4.73417
4.81357 4.83236 4.87296 4.94738 4.99758 5.03394 5.14470 5.17124
5.27796 5.29043 5.33649 5.41751 5.67423 5.73622 5.92544 5.95372
6.00563 6.16240 6.39957 6.41163 6.86878 7.29701 7.66670 8.52931
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013723 B = 0.004660 C = 0.004020
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2039.870476 B = 6006.815045 C = 6962.761451
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.121 4.121
3 C -0.115 4.115
4 C 0.098 3.902
5 N -0.463 5.463
6 C -0.353 4.353
7 H 0.090 0.910
8 C 0.044 3.956
9 N -0.880 5.880
10 Si 0.917 3.083
11 H -0.259 1.259
12 H -0.281 1.281
13 H -0.270 1.270
14 C 0.458 3.542
15 O -0.607 6.607
16 C 0.110 3.890
17 N -0.469 5.469
18 C 0.044 3.956
19 C -0.215 4.215
20 C -0.133 4.133
21 C -0.087 4.087
22 C -0.148 4.148
23 C -0.113 4.113
24 C -0.112 4.112
25 C -0.114 4.114
26 C 0.082 3.918
27 H 0.072 0.928
28 H 0.052 0.948
29 H 0.053 0.947
30 H 0.062 0.938
31 H 0.064 0.936
32 H 0.048 0.952
33 H 0.057 0.943
34 H 0.063 0.937
35 H 0.062 0.938
36 H 0.282 0.718
37 H 0.112 0.888
38 H 0.124 0.876
39 H 0.184 0.816
40 H 0.171 0.829
41 H 0.143 0.857
42 H 0.151 0.849
43 H 0.143 0.857
44 H 0.074 0.926
45 H 0.079 0.921
46 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.039 2.693 9.895 10.456
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.159 4.159
3 C -0.153 4.153
4 C -0.024 4.024
5 N -0.183 5.183
6 C -0.480 4.480
7 H 0.108 0.892
8 C -0.163 4.163
9 N -0.515 5.515
10 Si 0.743 3.257
11 H -0.185 1.185
12 H -0.208 1.208
13 H -0.195 1.195
14 C 0.247 3.753
15 O -0.492 6.492
16 C -0.014 4.014
17 N -0.151 5.151
18 C -0.080 4.080
19 C -0.239 4.239
20 C -0.138 4.138
21 C -0.106 4.106
22 C -0.167 4.167
23 C -0.132 4.132
24 C -0.114 4.114
25 C -0.171 4.171
26 C -0.024 4.024
27 H 0.091 0.909
28 H 0.071 0.929
29 H 0.072 0.928
30 H 0.081 0.919
31 H 0.083 0.917
32 H 0.067 0.933
33 H 0.075 0.925
34 H 0.081 0.919
35 H 0.080 0.920
36 H 0.092 0.908
37 H 0.130 0.870
38 H 0.142 0.858
39 H 0.201 0.799
40 H 0.188 0.812
41 H 0.161 0.839
42 H 0.169 0.831
43 H 0.161 0.839
44 H 0.093 0.907
45 H 0.098 0.902
46 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -2.170 2.291 9.823 10.317
hybrid contribution 0.634 -0.839 -0.724 1.276
sum -1.536 1.452 9.099 9.342
Atomic orbital electron populations
1.21707 0.94124 1.02485 1.01806 1.21483 0.97422 0.94912 1.02058
1.21723 0.94165 0.98238 1.01186 1.21764 0.95811 0.84275 1.00572
1.43840 1.56867 1.12434 1.05198 1.18961 1.45986 0.96189 0.86888
0.89228 1.25716 0.95943 1.00306 0.94303 1.69838 1.41017 1.41809
0.98828 0.86307 0.79677 0.81221 0.78455 1.18536 1.20781 1.19491
1.20969 0.81602 0.89489 0.83284 1.90595 1.57098 1.69297 1.32221
1.21521 1.04695 0.93987 0.81244 1.43717 1.10012 1.50005 1.11344
1.22285 0.90108 1.02397 0.93254 1.21904 0.95892 1.08719 0.97431
1.19625 0.95404 1.04821 0.93923 1.20543 0.94315 0.97790 0.97920
1.20919 0.95130 1.02903 0.97720 1.20990 1.00250 0.99317 0.92600
1.19188 0.91096 1.03038 0.98117 1.20854 1.01121 1.00909 0.94182
1.18473 0.91723 1.00362 0.91867 0.90906 0.92886 0.92756 0.91880
0.91699 0.93341 0.92463 0.91885 0.91953 0.90759 0.87047 0.85802
0.79857 0.81184 0.83897 0.83128 0.83879 0.90729 0.90187 0.94044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16
2 C -0.12 -3.68 5.93 30.60 0.18 -3.50 16
3 C -0.11 -4.39 5.54 30.60 0.17 -4.22 16
4 C 0.10 4.23 4.21 86.38 0.36 4.60 16
5 N -0.46 -21.30 2.21 -635.54 -1.40 -22.70 16
6 C -0.35 -17.19 9.04 84.04 0.76 -16.43 16
7 H 0.09 4.55 7.27 -2.91 -0.02 4.53 16
8 C 0.04 2.17 5.28 84.93 0.45 2.62 16
9 N -0.88 -45.57 13.96 21.66 0.30 -45.27 16
10 Si 0.92 39.38 25.11 68.60 1.72 41.10 16
11 H -0.26 -10.55 6.62 99.48 0.66 -9.89 16
12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
14 C 0.46 20.70 6.21 87.66 0.54 21.25 16
15 O -0.61 -30.60 16.03 -3.06 -0.05 -30.65 16
16 C 0.11 4.29 4.43 85.63 0.38 4.67 16
17 N -0.47 -17.61 2.28 -519.98 -1.18 -18.80 16
18 C 0.04 1.45 11.28 83.00 0.94 2.39 16
19 C -0.21 -6.56 11.08 23.51 0.26 -6.30 16
20 C -0.13 -4.50 6.37 -20.20 -0.13 -4.63 16
21 C -0.09 -2.43 10.05 22.23 0.22 -2.20 16
22 C -0.15 -3.77 9.97 22.04 0.22 -3.55 16
23 C -0.11 -3.20 9.65 22.30 0.22 -2.98 16
24 C -0.11 -3.88 5.89 -19.77 -0.12 -3.99 16
25 C -0.11 -3.79 8.66 71.23 0.62 -3.18 16
26 C 0.08 3.08 6.71 39.03 0.26 3.34 16
27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
31 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16
32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
34 H 0.06 2.72 3.13 -2.39 -0.01 2.72 16
35 H 0.06 2.71 7.48 -2.39 -0.02 2.70 16
36 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16
37 H 0.11 4.24 5.62 -2.39 -0.01 4.22 16
38 H 0.12 4.46 8.04 -2.39 -0.02 4.44 16
39 H 0.18 4.87 8.06 -2.91 -0.02 4.84 16
40 H 0.17 3.98 8.06 -2.91 -0.02 3.95 16
41 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16
42 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16
43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16
44 H 0.07 2.26 8.11 -2.38 -0.02 2.24 16
45 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16
46 H 0.04 1.62 4.74 -2.39 -0.01 1.60 16
Total: -1.00 -62.44 368.68 6.36 -56.08
By element:
Atomic # 1 Polarization: 34.37 SS G_CDS: 0.92 Total: 35.29 kcal
Atomic # 6 Polarization: -21.11 SS G_CDS: 6.05 Total: -15.06 kcal
Atomic # 7 Polarization: -84.48 SS G_CDS: -2.28 Total: -86.76 kcal
Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal
Atomic # 14 Polarization: 39.38 SS G_CDS: 1.72 Total: 41.10 kcal
Total: -62.44 6.36 -56.08 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001184196738.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.653 kcal
(2) G-P(sol) polarization free energy of solvation -62.437 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds