Wall clock time and date at job start Tue Mar 31 2020 11:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.46868 * 2 1 4 4 C 1.52997 * 109.46868 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46652 * 179.97438 * 4 3 2 6 6 C 1.37095 * 119.99614 * 269.99674 * 5 4 3 7 7 H 1.08005 * 119.99463 * 144.56839 * 6 5 4 8 8 C 1.38953 * 120.00392 * 324.56082 * 6 5 4 9 9 N 1.31411 * 119.99728 * 155.71753 * 8 6 5 10 10 Si 1.86798 * 119.99860 * 335.71959 * 8 6 5 11 11 H 1.48502 * 109.46833 * 94.98245 * 10 8 6 12 12 H 1.48499 * 109.47060 * 214.98132 * 10 8 6 13 13 H 1.48497 * 109.47495 * 334.98477 * 10 8 6 14 14 C 1.34773 * 120.00028 * 90.00302 * 5 4 3 15 15 O 1.21290 * 120.00068 * 355.92524 * 14 5 4 16 16 C 1.50703 * 119.99948 * 175.92999 * 14 5 4 17 17 N 1.46504 * 109.46915 * 183.44544 * 16 14 5 18 18 C 1.36832 * 125.05917 * 94.05153 * 17 16 14 19 19 C 1.34244 * 109.92700 * 179.97438 * 18 17 16 20 20 C 1.46488 * 106.99746 * 0.02562 * 19 18 17 21 21 C 1.39623 * 134.02683 * 180.02562 * 20 19 18 22 22 C 1.36634 * 119.75934 * 179.97438 * 21 20 19 23 23 C 1.38828 * 120.52981 * 359.97438 * 22 21 20 24 24 C 1.37749 * 120.66822 * 0.02562 * 23 22 21 25 25 C 1.50695 * 120.11282 * 179.97438 * 24 23 22 26 26 C 1.37683 * 125.06315 * 274.31717 * 17 16 14 27 27 H 1.09000 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47719 * 299.99800 * 1 2 3 29 29 H 1.08999 * 109.47030 * 60.00283 * 1 2 3 30 30 H 1.08993 * 109.47440 * 240.00154 * 2 1 3 31 31 H 1.09007 * 109.47227 * 119.99438 * 2 1 3 32 32 H 1.09002 * 109.46788 * 59.99629 * 3 2 1 33 33 H 1.08999 * 109.47064 * 299.99696 * 3 2 1 34 34 H 1.08993 * 109.47440 * 60.00154 * 4 3 2 35 35 H 1.08999 * 109.47030 * 299.99717 * 4 3 2 36 36 H 0.97003 * 119.99506 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.46953 * 63.45056 * 16 14 5 38 38 H 1.09000 * 109.46857 * 303.44552 * 16 14 5 39 39 H 1.07994 * 125.03714 * 0.02562 * 18 17 16 40 40 H 1.07994 * 126.49635 * 179.97438 * 19 18 17 41 41 H 1.07997 * 120.12198 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.73227 * 179.97438 * 22 21 20 43 43 H 1.07994 * 119.66712 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.47118 * 94.22597 * 25 24 23 45 45 H 1.09002 * 109.47238 * 334.22415 * 25 24 23 46 46 H 1.08997 * 109.47258 * 214.22343 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2871 3.4694 -1.1876 7 1 4.0858 4.5269 -1.2749 8 6 4.7783 2.7632 -2.2788 9 7 4.5611 3.2032 -3.4979 10 14 5.7473 1.1885 -2.0129 11 1 4.8344 0.0219 -2.1180 12 1 6.8094 1.0805 -3.0451 13 1 6.3682 1.2111 -0.6641 14 6 4.2823 3.4600 1.1669 15 8 4.0102 2.9158 2.2162 16 6 4.8709 4.8473 1.1679 17 7 5.0919 5.2829 2.5492 18 6 6.2672 5.1494 3.2370 19 6 6.1321 5.6501 4.4752 20 6 4.7579 6.1442 4.5897 21 6 4.0299 6.7600 5.6097 22 6 2.7266 7.1103 5.3965 23 6 2.1200 6.8594 4.1732 24 6 2.8196 6.2530 3.1533 25 6 2.1487 5.9860 1.8306 26 6 4.1463 5.8830 3.3501 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9287 -0.8890 35 1 3.9329 0.9290 0.8909 36 1 4.9043 2.7103 -4.2597 37 1 4.1825 5.5344 0.6760 38 1 5.8206 4.8394 0.6331 39 1 7.1699 4.7074 2.8420 40 1 6.8923 5.6819 5.2416 41 1 4.4954 6.9587 6.5638 42 1 2.1638 7.5862 6.1859 43 1 1.0892 7.1425 4.0196 44 1 2.3533 6.8097 1.1466 45 1 1.0727 5.8970 1.9805 46 1 2.5347 5.0584 1.4080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184196738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:09 Heat of formation + Delta-G solvation = 12.576685 kcal Electronic energy + Delta-G solvation = -26866.458042 eV Core-core repulsion = 23335.113829 eV Total energy + Delta-G solvation = -3531.344213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.38129 -40.65614 -38.08120 -37.30170 -35.69336 -34.67372 -33.93176 -32.26966 -30.40702 -29.78765 -28.69732 -27.10742 -26.54194 -24.66344 -23.03178 -22.51694 -22.17933 -21.29165 -20.54725 -19.06071 -18.29253 -17.74624 -17.34821 -16.91793 -16.35155 -16.19937 -16.08556 -16.02452 -15.21631 -15.10827 -14.80835 -14.69380 -14.42821 -14.25801 -13.95921 -13.95202 -13.81083 -13.46040 -13.41482 -13.28773 -13.09058 -12.91119 -12.80479 -12.27149 -12.21893 -12.19151 -12.12755 -11.99897 -11.81547 -11.68174 -11.51402 -11.09335 -10.69209 -10.28165 -9.86149 -9.02620 -8.60636 -8.42278 -6.18402 0.26094 0.78973 1.13649 1.28502 1.38024 1.67957 1.74738 1.96952 2.12478 2.58001 2.88577 3.05230 3.78012 3.81204 3.87579 3.97872 4.02260 4.04434 4.05503 4.17896 4.20926 4.28810 4.30315 4.44268 4.48466 4.58352 4.64442 4.70753 4.73417 4.81357 4.83236 4.87296 4.94738 4.99758 5.03394 5.14470 5.17124 5.27796 5.29043 5.33649 5.41751 5.67423 5.73622 5.92544 5.95372 6.00563 6.16240 6.39957 6.41163 6.86878 7.29701 7.66670 8.52931 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013723 B = 0.004660 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.870476 B = 6006.815045 C = 6962.761451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.098 3.902 5 N -0.463 5.463 6 C -0.353 4.353 7 H 0.090 0.910 8 C 0.044 3.956 9 N -0.880 5.880 10 Si 0.917 3.083 11 H -0.259 1.259 12 H -0.281 1.281 13 H -0.270 1.270 14 C 0.458 3.542 15 O -0.607 6.607 16 C 0.110 3.890 17 N -0.469 5.469 18 C 0.044 3.956 19 C -0.215 4.215 20 C -0.133 4.133 21 C -0.087 4.087 22 C -0.148 4.148 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.114 4.114 26 C 0.082 3.918 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.282 0.718 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.184 0.816 40 H 0.171 0.829 41 H 0.143 0.857 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 2.693 9.895 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.024 4.024 5 N -0.183 5.183 6 C -0.480 4.480 7 H 0.108 0.892 8 C -0.163 4.163 9 N -0.515 5.515 10 Si 0.743 3.257 11 H -0.185 1.185 12 H -0.208 1.208 13 H -0.195 1.195 14 C 0.247 3.753 15 O -0.492 6.492 16 C -0.014 4.014 17 N -0.151 5.151 18 C -0.080 4.080 19 C -0.239 4.239 20 C -0.138 4.138 21 C -0.106 4.106 22 C -0.167 4.167 23 C -0.132 4.132 24 C -0.114 4.114 25 C -0.171 4.171 26 C -0.024 4.024 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.201 0.799 40 H 0.188 0.812 41 H 0.161 0.839 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.170 2.291 9.823 10.317 hybrid contribution 0.634 -0.839 -0.724 1.276 sum -1.536 1.452 9.099 9.342 Atomic orbital electron populations 1.21707 0.94124 1.02485 1.01806 1.21483 0.97422 0.94912 1.02058 1.21723 0.94165 0.98238 1.01186 1.21764 0.95811 0.84275 1.00572 1.43840 1.56867 1.12434 1.05198 1.18961 1.45986 0.96189 0.86888 0.89228 1.25716 0.95943 1.00306 0.94303 1.69838 1.41017 1.41809 0.98828 0.86307 0.79677 0.81221 0.78455 1.18536 1.20781 1.19491 1.20969 0.81602 0.89489 0.83284 1.90595 1.57098 1.69297 1.32221 1.21521 1.04695 0.93987 0.81244 1.43717 1.10012 1.50005 1.11344 1.22285 0.90108 1.02397 0.93254 1.21904 0.95892 1.08719 0.97431 1.19625 0.95404 1.04821 0.93923 1.20543 0.94315 0.97790 0.97920 1.20919 0.95130 1.02903 0.97720 1.20990 1.00250 0.99317 0.92600 1.19188 0.91096 1.03038 0.98117 1.20854 1.01121 1.00909 0.94182 1.18473 0.91723 1.00362 0.91867 0.90906 0.92886 0.92756 0.91880 0.91699 0.93341 0.92463 0.91885 0.91953 0.90759 0.87047 0.85802 0.79857 0.81184 0.83897 0.83128 0.83879 0.90729 0.90187 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.68 5.93 30.60 0.18 -3.50 16 3 C -0.11 -4.39 5.54 30.60 0.17 -4.22 16 4 C 0.10 4.23 4.21 86.38 0.36 4.60 16 5 N -0.46 -21.30 2.21 -635.54 -1.40 -22.70 16 6 C -0.35 -17.19 9.04 84.04 0.76 -16.43 16 7 H 0.09 4.55 7.27 -2.91 -0.02 4.53 16 8 C 0.04 2.17 5.28 84.93 0.45 2.62 16 9 N -0.88 -45.57 13.96 21.66 0.30 -45.27 16 10 Si 0.92 39.38 25.11 68.60 1.72 41.10 16 11 H -0.26 -10.55 6.62 99.48 0.66 -9.89 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 C 0.46 20.70 6.21 87.66 0.54 21.25 16 15 O -0.61 -30.60 16.03 -3.06 -0.05 -30.65 16 16 C 0.11 4.29 4.43 85.63 0.38 4.67 16 17 N -0.47 -17.61 2.28 -519.98 -1.18 -18.80 16 18 C 0.04 1.45 11.28 83.00 0.94 2.39 16 19 C -0.21 -6.56 11.08 23.51 0.26 -6.30 16 20 C -0.13 -4.50 6.37 -20.20 -0.13 -4.63 16 21 C -0.09 -2.43 10.05 22.23 0.22 -2.20 16 22 C -0.15 -3.77 9.97 22.04 0.22 -3.55 16 23 C -0.11 -3.20 9.65 22.30 0.22 -2.98 16 24 C -0.11 -3.88 5.89 -19.77 -0.12 -3.99 16 25 C -0.11 -3.79 8.66 71.23 0.62 -3.18 16 26 C 0.08 3.08 6.71 39.03 0.26 3.34 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.72 3.13 -2.39 -0.01 2.72 16 35 H 0.06 2.71 7.48 -2.39 -0.02 2.70 16 36 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 37 H 0.11 4.24 5.62 -2.39 -0.01 4.22 16 38 H 0.12 4.46 8.04 -2.39 -0.02 4.44 16 39 H 0.18 4.87 8.06 -2.91 -0.02 4.84 16 40 H 0.17 3.98 8.06 -2.91 -0.02 3.95 16 41 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 42 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.07 2.26 8.11 -2.38 -0.02 2.24 16 45 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16 46 H 0.04 1.62 4.74 -2.39 -0.01 1.60 16 Total: -1.00 -62.44 368.68 6.36 -56.08 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.92 Total: 35.29 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 6.05 Total: -15.06 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.28 Total: -86.76 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.72 Total: 41.10 kcal Total: -62.44 6.36 -56.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184196738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.653 kcal (2) G-P(sol) polarization free energy of solvation -62.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds