Wall clock time and date at job start Tue Mar 31 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47067 * 2 1 4 4 H 1.08998 * 109.47371 * 55.00212 * 3 2 1 5 5 C 1.53008 * 109.47283 * 294.99873 * 3 2 1 6 6 C 1.53003 * 109.46928 * 175.00171 * 3 2 1 7 7 N 1.46909 * 109.47040 * 184.99973 * 6 3 2 8 8 C 1.46905 * 110.99785 * 66.04340 * 7 6 3 9 9 C 1.46893 * 110.99908 * 190.00205 * 7 6 3 10 10 H 1.09004 * 110.91561 * 297.54606 * 9 7 6 11 11 C 1.55448 * 111.11668 * 173.55768 * 9 7 6 12 12 C 1.54321 * 102.96961 * 206.46036 * 11 9 7 13 13 N 1.47026 * 107.26791 * 22.19024 * 12 11 9 14 14 C 1.34780 * 125.64285 * 181.07596 * 13 12 11 15 15 O 1.21287 * 119.99688 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00303 * 359.97438 * 14 13 12 17 17 S 1.80999 * 109.47052 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99912 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99739 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99776 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00209 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99834 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46780 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47160 * 119.99653 * 22 20 18 25 25 H 1.48496 * 109.46857 * 239.99844 * 22 20 18 26 26 C 1.47419 * 108.70576 * 1.06162 * 13 12 11 27 27 H 1.09000 * 109.47169 * 60.00289 * 1 2 3 28 28 H 1.09005 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47074 * 299.99694 * 1 2 3 30 30 H 1.09002 * 109.46881 * 239.99912 * 2 1 3 31 31 H 1.09002 * 109.47051 * 120.00243 * 2 1 3 32 32 H 1.08996 * 109.47164 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.46720 * 300.00222 * 5 3 2 34 34 H 1.09001 * 109.46143 * 59.99820 * 5 3 2 35 35 H 1.08998 * 109.47112 * 65.00376 * 6 3 2 36 36 H 1.08998 * 109.47385 * 304.99506 * 6 3 2 37 37 H 1.09001 * 109.46976 * 183.95809 * 8 7 6 38 38 H 1.09003 * 109.47226 * 303.95501 * 8 7 6 39 39 H 1.08999 * 109.46852 * 63.95239 * 8 7 6 40 40 H 1.08998 * 110.70855 * 88.08840 * 11 9 7 41 41 H 1.08997 * 110.70436 * 324.83588 * 11 9 7 42 42 H 1.08998 * 109.88101 * 262.77542 * 12 11 9 43 43 H 1.09000 * 109.88483 * 141.60664 * 12 11 9 44 44 H 1.09004 * 109.47049 * 299.99920 * 16 14 13 45 45 H 1.08999 * 109.47179 * 59.99802 * 16 14 13 46 46 H 0.97002 * 120.00358 * 180.02562 * 21 20 18 47 47 H 1.09002 * 110.36926 * 94.70918 * 26 13 12 48 48 H 1.08995 * 110.36556 * 216.92202 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5649 1.4443 0.1257 7 7 4.0447 2.8276 0.2461 8 6 3.5895 3.4350 1.5039 9 6 5.5078 2.8892 0.1308 10 1 5.9855 2.3344 0.9384 11 6 6.0053 4.3615 0.0957 12 6 7.3345 4.2595 -0.6817 13 7 7.2809 3.0245 -1.4776 14 6 8.2608 2.5644 -2.2806 15 8 8.1071 1.5286 -2.8925 16 6 9.5473 3.3371 -2.4181 17 16 10.6541 2.4682 -3.5566 18 6 12.0376 3.5591 -3.5305 19 1 12.0102 4.4516 -2.9229 20 6 13.1623 3.2719 -4.2915 21 7 13.1955 2.1844 -5.0323 22 14 14.6293 4.4280 -4.2633 23 1 14.3426 5.5694 -3.3577 24 1 15.8264 3.6970 -3.7754 25 1 14.8849 4.9369 -5.6347 26 6 5.9781 2.3726 -1.2518 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.9982 3.1543 -1.3072 33 1 2.0699 1.5875 -2.1491 34 1 0.5489 2.1252 -1.3969 35 1 4.0030 0.9836 -0.7597 36 1 3.8572 0.8800 1.0113 37 1 3.8988 4.4797 1.5356 38 1 2.5027 3.3759 1.5635 39 1 4.0292 2.9001 2.3456 40 1 6.1767 4.7346 1.1054 41 1 5.2955 4.9955 -0.4355 42 1 8.1699 4.2143 0.0169 43 1 7.4456 5.1206 -1.3406 44 1 9.3335 4.3325 -2.8074 45 1 10.0253 3.4235 -1.4423 46 1 13.9816 1.9834 -5.5639 47 1 5.2689 2.6634 -2.0267 48 1 6.0945 1.2890 -1.2323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188958573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:33 Heat of formation + Delta-G solvation = -64.191685 kcal Electronic energy + Delta-G solvation = -24124.689749 eV Core-core repulsion = 20725.460560 eV Total energy + Delta-G solvation = -3399.229188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20748 -39.60914 -37.93552 -35.81785 -34.59834 -32.42984 -31.08994 -30.42070 -29.41550 -27.85590 -27.67110 -25.73522 -24.55289 -23.16432 -21.19418 -20.87134 -20.48007 -19.56702 -18.13335 -17.79336 -16.89792 -16.75395 -16.54905 -16.01081 -15.96926 -15.67887 -15.53632 -14.99697 -14.74480 -14.44756 -14.38767 -14.11154 -13.86517 -13.79968 -13.36995 -13.29899 -13.15912 -12.91947 -12.87122 -12.84286 -12.66149 -12.56817 -12.50076 -12.26599 -11.89714 -11.85534 -11.72091 -11.42422 -11.33363 -11.27197 -11.16818 -11.01767 -10.29663 -9.74529 -9.31780 -8.69812 -8.35718 -6.14755 1.21757 1.41333 1.43638 1.52063 1.56438 2.01622 2.26016 2.88926 2.98455 3.19015 3.39234 3.64505 3.83604 3.90003 3.98865 4.04851 4.15038 4.19314 4.30061 4.33374 4.41068 4.42481 4.47595 4.59902 4.64765 4.67938 4.74165 4.75685 4.82142 4.83892 4.88614 4.93952 4.97978 5.11490 5.17195 5.19389 5.21299 5.25168 5.28958 5.33630 5.41024 5.55173 5.59993 6.06470 6.09752 6.19114 6.35402 7.05259 7.06716 8.73913 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002306 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.263727 B =12138.223097 C =12819.293006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.080 4.080 4 H 0.080 0.920 5 C -0.136 4.136 6 C 0.054 3.946 7 N -0.530 5.530 8 C 0.022 3.978 9 C 0.079 3.921 10 H 0.056 0.944 11 C -0.106 4.106 12 C 0.091 3.909 13 N -0.617 5.617 14 C 0.545 3.455 15 O -0.568 6.568 16 C -0.118 4.118 17 S -0.153 6.153 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.116 3.884 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.071 0.929 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.644 5.487 17.268 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.099 4.099 4 H 0.098 0.902 5 C -0.194 4.194 6 C -0.074 4.074 7 N -0.254 5.254 8 C -0.126 4.126 9 C -0.031 4.031 10 H 0.074 0.926 11 C -0.144 4.144 12 C -0.031 4.031 13 N -0.352 5.352 14 C 0.334 3.666 15 O -0.447 6.447 16 C -0.269 4.269 17 S 0.074 5.926 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.007 4.007 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.934 4.116 15.832 29.821 hybrid contribution 1.596 0.669 0.820 1.915 sum -23.338 4.785 16.652 29.066 Atomic orbital electron populations 1.21781 0.94976 1.01799 1.02153 1.21563 0.96696 0.96009 1.01710 1.21134 0.93269 0.96214 0.99262 0.90188 1.21726 1.00674 1.00852 0.96104 1.22264 0.96294 0.88494 1.00329 1.61966 1.08185 1.18609 1.36647 1.22506 1.01608 1.00239 0.88236 1.22700 0.88463 0.97542 0.94371 0.92567 1.22721 0.94570 0.95140 1.01969 1.22380 1.00174 0.85944 0.94575 1.48370 1.15523 1.26044 1.45273 1.19823 0.84160 0.84620 0.78013 1.90686 1.81071 1.25841 1.47124 1.23285 0.95725 1.03036 1.04837 1.85614 1.13735 1.35350 1.57874 1.23221 1.01970 1.10934 1.33072 0.89809 1.26167 1.01737 0.97593 0.93787 1.70193 1.30708 1.26361 1.27554 0.84874 0.76490 0.77854 0.78520 1.17890 1.19891 1.19904 1.22172 0.83677 0.96941 0.97880 0.92435 0.92652 0.92256 0.92761 0.92033 0.92173 0.94296 0.92358 0.92089 0.94762 0.89923 0.90170 0.95465 0.87390 0.88660 0.90125 0.90002 0.87437 0.87428 0.91964 0.91034 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 71.98 0.70 -0.90 16 2 C -0.12 -1.54 5.40 30.59 0.17 -1.37 16 3 C -0.08 -1.04 2.31 -10.79 -0.02 -1.06 16 4 H 0.08 0.90 6.26 -2.39 -0.01 0.89 16 5 C -0.14 -1.97 8.84 71.98 0.64 -1.33 16 6 C 0.05 0.85 4.22 86.30 0.36 1.21 16 7 N -0.53 -7.81 4.12 -888.25 -3.66 -11.47 16 8 C 0.02 0.22 9.18 127.69 1.17 1.39 16 9 C 0.08 1.36 2.72 46.41 0.13 1.49 16 10 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 11 C -0.11 -1.42 5.42 31.88 0.17 -1.25 16 12 C 0.09 1.78 6.49 86.73 0.56 2.34 16 13 N -0.62 -18.11 3.33 -811.81 -2.70 -20.81 16 14 C 0.55 22.03 7.87 87.66 0.69 22.72 16 15 O -0.57 -28.37 16.12 -3.05 -0.05 -28.42 16 16 C -0.12 -4.91 5.35 71.24 0.38 -4.53 16 17 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 18 C -0.54 -31.44 9.50 67.95 0.65 -30.80 16 19 H 0.08 4.49 7.80 -2.91 -0.02 4.46 16 20 C 0.01 0.68 5.49 84.86 0.47 1.14 16 21 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 22 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 C 0.12 2.97 5.31 86.85 0.46 3.43 16 27 H 0.06 0.62 6.57 -2.39 -0.02 0.60 16 28 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.94 7.75 -2.39 -0.02 0.92 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.73 6.56 -2.39 -0.02 0.71 16 35 H 0.06 1.18 6.67 -2.39 -0.02 1.16 16 36 H 0.03 0.53 8.12 -2.39 -0.02 0.52 16 37 H 0.08 0.67 7.22 -2.39 -0.02 0.65 16 38 H 0.08 0.71 6.21 -2.39 -0.01 0.69 16 39 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.11 0.92 8.09 -2.39 -0.02 0.90 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 44 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 45 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 46 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 47 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.05 1.59 7.67 -2.39 -0.02 1.57 16 Total: -1.00 -75.86 389.08 2.16 -73.69 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.90 Total: 14.85 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 6.51 Total: -7.52 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -6.07 Total: -88.58 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -75.86 2.16 -73.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.503 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds