Wall clock time and date at job start Tue Mar 31 2020 11:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 C 1.52993 * 109.47131 * 239.99682 * 2 1 3 5 5 C 1.53000 * 109.47428 * 295.00369 * 4 2 1 6 6 N 1.46896 * 109.47678 * 180.02562 * 5 4 2 7 7 C 1.46902 * 111.00076 * 66.04072 * 6 5 4 8 8 C 1.46898 * 111.00450 * 189.99747 * 6 5 4 9 9 H 1.08996 * 110.88569 * 297.91884 * 8 6 5 10 10 C 1.55160 * 111.00210 * 61.83693 * 8 6 5 11 11 C 1.54324 * 102.93972 * 153.57840 * 10 8 6 12 12 N 1.47021 * 107.27373 * 337.80430 * 11 10 8 13 13 C 1.34776 * 125.65252 * 178.97637 * 12 11 10 14 14 O 1.21271 * 120.00333 * 179.97438 * 13 12 11 15 15 C 1.50703 * 119.99491 * 359.96206 * 13 12 11 16 16 S 1.81000 * 109.46931 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99919 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99772 * 180.02562 * 17 16 15 20 20 N 1.31639 * 119.99849 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00351 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47302 * 90.00152 * 21 19 17 23 23 H 1.48498 * 109.47230 * 210.00564 * 21 19 17 24 24 H 1.48506 * 109.46849 * 330.00074 * 21 19 17 25 25 C 1.47422 * 108.70131 * 358.94145 * 12 11 10 26 26 H 1.08996 * 109.47100 * 59.99932 * 1 2 3 27 27 H 1.08994 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46985 * 300.00143 * 1 2 3 29 29 H 1.09001 * 109.46853 * 119.99654 * 2 1 3 30 30 H 1.08998 * 109.47345 * 59.99976 * 3 2 1 31 31 H 1.08999 * 109.47193 * 180.02562 * 3 2 1 32 32 H 1.09010 * 109.47122 * 299.99796 * 3 2 1 33 33 H 1.09001 * 109.47157 * 54.99882 * 4 2 1 34 34 H 1.09000 * 109.47529 * 175.00035 * 4 2 1 35 35 H 1.09001 * 109.46554 * 299.99883 * 5 4 2 36 36 H 1.09000 * 109.47037 * 59.99365 * 5 4 2 37 37 H 1.08997 * 109.47288 * 54.72553 * 7 6 5 38 38 H 1.09003 * 109.47303 * 174.72780 * 7 6 5 39 39 H 1.09003 * 109.47459 * 294.72413 * 7 6 5 40 40 H 1.08995 * 110.71762 * 271.93991 * 10 8 6 41 41 H 1.08999 * 110.71962 * 35.21242 * 10 8 6 42 42 H 1.09003 * 109.88407 * 218.38762 * 11 10 8 43 43 H 1.08998 * 109.88232 * 97.22539 * 11 10 8 44 44 H 1.09006 * 109.47107 * 299.99779 * 15 13 12 45 45 H 1.08997 * 109.47214 * 59.99664 * 15 13 12 46 46 H 0.96998 * 119.99948 * 179.97438 * 20 19 17 47 47 H 1.08996 * 110.37113 * 265.28483 * 25 12 11 48 48 H 1.09007 * 110.46124 * 143.01264 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6352 -2.1955 -1.1879 6 7 2.1254 -2.8882 -2.3869 7 6 3.5936 -2.9295 -2.4078 8 6 1.5593 -4.2404 -2.4822 9 1 1.8633 -4.8498 -1.6312 10 6 0.0135 -4.1887 -2.6063 11 6 -0.3173 -5.4982 -3.3527 12 7 0.8996 -5.9137 -4.0657 13 6 1.0278 -7.0228 -4.8205 14 8 2.0834 -7.2669 -5.3653 15 6 -0.1407 -7.9599 -4.9873 16 16 0.3430 -9.3444 -6.0480 17 6 -1.1659 -10.2540 -6.0708 18 1 -2.0232 -9.8917 -5.5231 19 6 -1.2523 -11.4368 -6.7919 20 7 -2.3795 -12.1167 -6.8086 21 14 0.2307 -12.0640 -7.7388 22 1 1.0400 -12.9481 -6.8622 23 1 -0.2275 -12.8292 -8.9261 24 1 1.0585 -10.9131 -8.1810 25 6 1.9561 -4.9156 -3.8188 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6054 -0.2618 -2.1369 34 1 3.1263 -0.6444 -1.2951 35 1 2.0698 -2.6549 -0.3001 36 1 0.5489 -2.2724 -1.1419 37 1 3.9578 -3.3753 -1.4822 38 1 3.9283 -3.5276 -3.2554 39 1 3.9844 -1.9162 -2.5015 40 1 -0.4522 -4.1782 -1.6209 41 1 -0.2977 -3.3226 -3.1903 42 1 -1.1236 -5.3252 -4.0655 43 1 -0.6098 -6.2682 -2.6388 44 1 -0.4445 -8.3391 -4.0115 45 1 -0.9731 -7.4249 -5.4444 46 1 -2.4400 -12.9431 -7.3128 47 1 1.9789 -4.1804 -4.6231 48 1 2.9264 -5.4033 -3.7240 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188982565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:02 Heat of formation + Delta-G solvation = -44.881835 kcal Electronic energy + Delta-G solvation = -23897.628584 eV Core-core repulsion = 20499.236733 eV Total energy + Delta-G solvation = -3398.391851 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13025 -38.56788 -37.05921 -35.43525 -32.43128 -31.40924 -30.19222 -29.34453 -27.85802 -27.48847 -26.14898 -25.57737 -23.02064 -22.56235 -20.43062 -20.27038 -19.38508 -17.73183 -17.02478 -16.67281 -15.82774 -15.49397 -15.32975 -15.00820 -14.80158 -14.69797 -14.33949 -14.06132 -13.78241 -13.63979 -13.37507 -13.01373 -12.87350 -12.82160 -12.61420 -12.56234 -12.37349 -12.15118 -11.92109 -11.70911 -11.49224 -11.30582 -11.25027 -11.15173 -11.02600 -10.99975 -10.88920 -10.76114 -10.58919 -9.85072 -9.52224 -8.99523 -8.72945 -8.56021 -8.48936 -6.91241 -6.28189 -3.99902 2.66390 2.95454 3.14611 3.33884 3.51234 3.52549 3.66969 4.12261 4.34095 4.40787 4.45534 4.46458 4.55944 4.71708 4.76575 4.86288 4.92094 5.06357 5.09594 5.10961 5.15458 5.19822 5.22946 5.24729 5.26527 5.30413 5.43507 5.47803 5.51451 5.57775 5.60700 5.63356 5.66630 5.67821 5.73380 5.77726 5.84622 5.89630 5.93979 6.01456 6.02892 6.32021 6.68451 6.73409 7.58775 7.94906 8.42309 8.44397 9.18013 10.80976 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.038902 B = 0.002172 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.589294 B =12888.670222 C =13491.314942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.111 4.111 5 C 0.053 3.947 6 N -0.531 5.531 7 C 0.018 3.982 8 C 0.067 3.933 9 H 0.058 0.942 10 C -0.122 4.122 11 C 0.102 3.898 12 N -0.624 5.624 13 C 0.548 3.452 14 O -0.518 6.518 15 C -0.117 4.117 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.119 3.881 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.076 0.924 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 25.974 15.329 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.149 4.149 5 C -0.075 4.075 6 N -0.255 5.255 7 C -0.130 4.130 8 C -0.042 4.042 9 H 0.076 0.924 10 C -0.160 4.160 11 C -0.022 4.022 12 N -0.362 5.362 13 C 0.336 3.664 14 O -0.393 6.393 15 C -0.268 4.268 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.004 4.004 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.170 25.626 13.982 30.314 hybrid contribution -0.609 -0.669 1.004 1.351 sum 7.561 24.957 14.986 30.077 Atomic orbital electron populations 1.21898 0.95121 1.01880 1.01774 1.21099 0.96069 0.96224 0.98207 1.21828 1.00866 0.95932 1.01787 1.21649 1.00949 0.94175 0.98111 1.22248 1.00841 0.94232 0.90183 1.61984 1.07925 1.16111 1.39492 1.22484 0.87134 1.02466 1.00896 1.22791 0.95144 0.89096 0.97152 0.92405 1.22705 0.94529 0.97808 1.00988 1.22024 0.88151 0.96151 0.95850 1.48377 1.13425 1.23469 1.50910 1.19979 0.89621 0.79626 0.77156 1.90701 1.29181 1.73023 1.46379 1.23251 0.98889 0.99542 1.05070 1.84788 1.21520 1.22650 1.62683 1.22308 0.97008 1.10275 1.37222 0.89376 1.24712 0.96190 0.95220 0.95187 1.69942 1.25241 1.15793 1.40709 0.86733 0.83340 0.81336 0.80445 1.19219 1.19928 1.15907 1.22079 0.91811 0.90591 0.95964 0.92498 0.92477 0.92908 0.91477 0.92773 0.92806 0.92589 0.90962 0.91956 0.94957 0.90171 0.95488 0.90988 0.90964 0.90239 0.89334 0.90828 0.91126 0.88599 0.88485 0.91953 0.90587 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.95 37.16 0.33 -0.44 16 2 C -0.10 -0.52 2.92 -90.62 -0.26 -0.78 16 3 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 4 C -0.11 -0.67 4.60 -26.73 -0.12 -0.79 16 5 C 0.05 0.36 4.59 -3.83 -0.02 0.34 16 6 N -0.53 -4.38 4.66 -232.30 -1.08 -5.46 16 7 C 0.02 0.14 9.13 60.07 0.55 0.69 16 8 C 0.07 0.63 2.71 -65.56 -0.18 0.45 16 9 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 10 C -0.12 -1.00 5.33 -24.89 -0.13 -1.13 16 11 C 0.10 1.08 6.49 -3.06 -0.02 1.06 16 12 N -0.62 -8.96 3.33 -170.52 -0.57 -9.53 16 13 C 0.55 10.38 7.87 -10.98 -0.09 10.29 16 14 O -0.52 -11.72 16.12 5.56 0.09 -11.64 16 15 C -0.12 -2.35 5.35 36.01 0.19 -2.16 16 16 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 17 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16 21 Si 0.86 21.96 27.74 -169.99 -4.71 17.25 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 C 0.12 1.45 5.34 -2.53 -0.01 1.44 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.29 6.57 -51.93 -0.34 -0.05 16 28 H 0.05 0.26 8.14 -51.92 -0.42 -0.17 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.38 6.67 -51.93 -0.35 0.03 16 35 H 0.03 0.23 8.07 -51.93 -0.42 -0.19 16 36 H 0.08 0.52 5.17 -51.93 -0.27 0.25 16 37 H 0.03 0.20 8.07 -51.93 -0.42 -0.22 16 38 H 0.07 0.59 6.73 -51.93 -0.35 0.24 16 39 H 0.07 0.48 6.73 -51.93 -0.35 0.13 16 40 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 45 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.07 0.99 7.69 -51.92 -0.40 0.59 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -33.30 387.22 -9.66 -42.97 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -8.80 Total: -4.35 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 0.79 Total: -3.51 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.87 Total: -40.87 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.30 -9.66 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188982565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.916 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds