Wall clock time and date at job start Tue Mar 31 2020 11:00:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47162 * 2 1
4 4 C 1.52993 * 109.47131 * 239.99682 * 2 1 3
5 5 C 1.53000 * 109.47428 * 295.00369 * 4 2 1
6 6 N 1.46896 * 109.47678 * 180.02562 * 5 4 2
7 7 C 1.46902 * 111.00076 * 66.04072 * 6 5 4
8 8 C 1.46898 * 111.00450 * 189.99747 * 6 5 4
9 9 H 1.08996 * 110.88569 * 297.91884 * 8 6 5
10 10 C 1.55160 * 111.00210 * 61.83693 * 8 6 5
11 11 C 1.54324 * 102.93972 * 153.57840 * 10 8 6
12 12 N 1.47021 * 107.27373 * 337.80430 * 11 10 8
13 13 C 1.34776 * 125.65252 * 178.97637 * 12 11 10
14 14 O 1.21271 * 120.00333 * 179.97438 * 13 12 11
15 15 C 1.50703 * 119.99491 * 359.96206 * 13 12 11
16 16 S 1.81000 * 109.46931 * 180.02562 * 15 13 12
17 17 C 1.76200 * 100.00013 * 179.97438 * 16 15 13
18 18 H 1.07994 * 119.99919 * 359.97438 * 17 16 15
19 19 C 1.38799 * 119.99772 * 180.02562 * 17 16 15
20 20 N 1.31639 * 119.99849 * 179.97438 * 19 17 16
21 21 Si 1.86797 * 120.00351 * 359.97438 * 19 17 16
22 22 H 1.48497 * 109.47302 * 90.00152 * 21 19 17
23 23 H 1.48498 * 109.47230 * 210.00564 * 21 19 17
24 24 H 1.48506 * 109.46849 * 330.00074 * 21 19 17
25 25 C 1.47422 * 108.70131 * 358.94145 * 12 11 10
26 26 H 1.08996 * 109.47100 * 59.99932 * 1 2 3
27 27 H 1.08994 * 109.47095 * 180.02562 * 1 2 3
28 28 H 1.09008 * 109.46985 * 300.00143 * 1 2 3
29 29 H 1.09001 * 109.46853 * 119.99654 * 2 1 3
30 30 H 1.08998 * 109.47345 * 59.99976 * 3 2 1
31 31 H 1.08999 * 109.47193 * 180.02562 * 3 2 1
32 32 H 1.09010 * 109.47122 * 299.99796 * 3 2 1
33 33 H 1.09001 * 109.47157 * 54.99882 * 4 2 1
34 34 H 1.09000 * 109.47529 * 175.00035 * 4 2 1
35 35 H 1.09001 * 109.46554 * 299.99883 * 5 4 2
36 36 H 1.09000 * 109.47037 * 59.99365 * 5 4 2
37 37 H 1.08997 * 109.47288 * 54.72553 * 7 6 5
38 38 H 1.09003 * 109.47303 * 174.72780 * 7 6 5
39 39 H 1.09003 * 109.47459 * 294.72413 * 7 6 5
40 40 H 1.08995 * 110.71762 * 271.93991 * 10 8 6
41 41 H 1.08999 * 110.71962 * 35.21242 * 10 8 6
42 42 H 1.09003 * 109.88407 * 218.38762 * 11 10 8
43 43 H 1.08998 * 109.88232 * 97.22539 * 11 10 8
44 44 H 1.09006 * 109.47107 * 299.99779 * 15 13 12
45 45 H 1.08997 * 109.47214 * 59.99664 * 15 13 12
46 46 H 0.96998 * 119.99948 * 179.97438 * 20 19 17
47 47 H 1.08996 * 110.37113 * 265.28483 * 25 12 11
48 48 H 1.09007 * 110.46124 * 143.01264 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 1.6352 -2.1955 -1.1879
6 7 2.1254 -2.8882 -2.3869
7 6 3.5936 -2.9295 -2.4078
8 6 1.5593 -4.2404 -2.4822
9 1 1.8633 -4.8498 -1.6312
10 6 0.0135 -4.1887 -2.6063
11 6 -0.3173 -5.4982 -3.3527
12 7 0.8996 -5.9137 -4.0657
13 6 1.0278 -7.0228 -4.8205
14 8 2.0834 -7.2669 -5.3653
15 6 -0.1407 -7.9599 -4.9873
16 16 0.3430 -9.3444 -6.0480
17 6 -1.1659 -10.2540 -6.0708
18 1 -2.0232 -9.8917 -5.5231
19 6 -1.2523 -11.4368 -6.7919
20 7 -2.3795 -12.1167 -6.8086
21 14 0.2307 -12.0640 -7.7388
22 1 1.0400 -12.9481 -6.8622
23 1 -0.2275 -12.8292 -8.9261
24 1 1.0585 -10.9131 -8.1810
25 6 1.9561 -4.9156 -3.8188
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 1.8933 -0.5138 0.8900
30 1 1.6767 1.9563 0.8899
31 1 3.1300 1.4425 -0.0005
32 1 1.6767 1.9563 -0.8901
33 1 1.6054 -0.2618 -2.1369
34 1 3.1263 -0.6444 -1.2951
35 1 2.0698 -2.6549 -0.3001
36 1 0.5489 -2.2724 -1.1419
37 1 3.9578 -3.3753 -1.4822
38 1 3.9283 -3.5276 -3.2554
39 1 3.9844 -1.9162 -2.5015
40 1 -0.4522 -4.1782 -1.6209
41 1 -0.2977 -3.3226 -3.1903
42 1 -1.1236 -5.3252 -4.0655
43 1 -0.6098 -6.2682 -2.6388
44 1 -0.4445 -8.3391 -4.0115
45 1 -0.9731 -7.4249 -5.4444
46 1 -2.4400 -12.9431 -7.3128
47 1 1.9789 -4.1804 -4.6231
48 1 2.9264 -5.4033 -3.7240
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001188982565.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:02
Heat of formation + Delta-G solvation = -44.881835 kcal
Electronic energy + Delta-G solvation = -23897.628584 eV
Core-core repulsion = 20499.236733 eV
Total energy + Delta-G solvation = -3398.391851 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.13025 -38.56788 -37.05921 -35.43525 -32.43128 -31.40924 -30.19222 -29.34453
-27.85802 -27.48847 -26.14898 -25.57737 -23.02064 -22.56235 -20.43062 -20.27038
-19.38508 -17.73183 -17.02478 -16.67281 -15.82774 -15.49397 -15.32975 -15.00820
-14.80158 -14.69797 -14.33949 -14.06132 -13.78241 -13.63979 -13.37507 -13.01373
-12.87350 -12.82160 -12.61420 -12.56234 -12.37349 -12.15118 -11.92109 -11.70911
-11.49224 -11.30582 -11.25027 -11.15173 -11.02600 -10.99975 -10.88920 -10.76114
-10.58919 -9.85072 -9.52224 -8.99523 -8.72945 -8.56021 -8.48936 -6.91241
-6.28189 -3.99902 2.66390 2.95454 3.14611 3.33884 3.51234 3.52549
3.66969 4.12261 4.34095 4.40787 4.45534 4.46458 4.55944 4.71708
4.76575 4.86288 4.92094 5.06357 5.09594 5.10961 5.15458 5.19822
5.22946 5.24729 5.26527 5.30413 5.43507 5.47803 5.51451 5.57775
5.60700 5.63356 5.66630 5.67821 5.73380 5.77726 5.84622 5.89630
5.93979 6.01456 6.02892 6.32021 6.68451 6.73409 7.58775 7.94906
8.42309 8.44397 9.18013 10.80976
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.038902 B = 0.002172 C = 0.002075
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 719.589294 B =12888.670222 C =13491.314942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.097 4.097
3 C -0.147 4.147
4 C -0.111 4.111
5 C 0.053 3.947
6 N -0.531 5.531
7 C 0.018 3.982
8 C 0.067 3.933
9 H 0.058 0.942
10 C -0.122 4.122
11 C 0.102 3.898
12 N -0.624 5.624
13 C 0.548 3.452
14 O -0.518 6.518
15 C -0.117 4.117
16 S -0.143 6.143
17 C -0.521 4.521
18 H 0.088 0.912
19 C 0.096 3.904
20 N -0.880 5.880
21 Si 0.857 3.143
22 H -0.267 1.267
23 H -0.274 1.274
24 H -0.235 1.235
25 C 0.119 3.881
26 H 0.056 0.944
27 H 0.056 0.944
28 H 0.052 0.948
29 H 0.067 0.933
30 H 0.053 0.947
31 H 0.053 0.947
32 H 0.055 0.945
33 H 0.072 0.928
34 H 0.062 0.938
35 H 0.032 0.968
36 H 0.080 0.920
37 H 0.027 0.973
38 H 0.071 0.929
39 H 0.072 0.928
40 H 0.079 0.921
41 H 0.088 0.912
42 H 0.073 0.927
43 H 0.070 0.930
44 H 0.096 0.904
45 H 0.097 0.903
46 H 0.271 0.729
47 H 0.076 0.924
48 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.859 25.974 15.329 30.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.116 4.116
3 C -0.204 4.204
4 C -0.149 4.149
5 C -0.075 4.075
6 N -0.255 5.255
7 C -0.130 4.130
8 C -0.042 4.042
9 H 0.076 0.924
10 C -0.160 4.160
11 C -0.022 4.022
12 N -0.362 5.362
13 C 0.336 3.664
14 O -0.393 6.393
15 C -0.268 4.268
16 S 0.084 5.916
17 C -0.668 4.668
18 H 0.106 0.894
19 C -0.113 4.113
20 N -0.517 5.517
21 Si 0.681 3.319
22 H -0.192 1.192
23 H -0.199 1.199
24 H -0.159 1.159
25 C -0.004 4.004
26 H 0.075 0.925
27 H 0.075 0.925
28 H 0.071 0.929
29 H 0.085 0.915
30 H 0.072 0.928
31 H 0.072 0.928
32 H 0.074 0.926
33 H 0.090 0.910
34 H 0.080 0.920
35 H 0.050 0.950
36 H 0.098 0.902
37 H 0.045 0.955
38 H 0.090 0.910
39 H 0.090 0.910
40 H 0.098 0.902
41 H 0.107 0.893
42 H 0.092 0.908
43 H 0.089 0.911
44 H 0.114 0.886
45 H 0.115 0.885
46 H 0.080 0.920
47 H 0.094 0.906
48 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 8.170 25.626 13.982 30.314
hybrid contribution -0.609 -0.669 1.004 1.351
sum 7.561 24.957 14.986 30.077
Atomic orbital electron populations
1.21898 0.95121 1.01880 1.01774 1.21099 0.96069 0.96224 0.98207
1.21828 1.00866 0.95932 1.01787 1.21649 1.00949 0.94175 0.98111
1.22248 1.00841 0.94232 0.90183 1.61984 1.07925 1.16111 1.39492
1.22484 0.87134 1.02466 1.00896 1.22791 0.95144 0.89096 0.97152
0.92405 1.22705 0.94529 0.97808 1.00988 1.22024 0.88151 0.96151
0.95850 1.48377 1.13425 1.23469 1.50910 1.19979 0.89621 0.79626
0.77156 1.90701 1.29181 1.73023 1.46379 1.23251 0.98889 0.99542
1.05070 1.84788 1.21520 1.22650 1.62683 1.22308 0.97008 1.10275
1.37222 0.89376 1.24712 0.96190 0.95220 0.95187 1.69942 1.25241
1.15793 1.40709 0.86733 0.83340 0.81336 0.80445 1.19219 1.19928
1.15907 1.22079 0.91811 0.90591 0.95964 0.92498 0.92477 0.92908
0.91477 0.92773 0.92806 0.92589 0.90962 0.91956 0.94957 0.90171
0.95488 0.90988 0.90964 0.90239 0.89334 0.90828 0.91126 0.88599
0.88485 0.91953 0.90587 0.90697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.77 8.95 37.16 0.33 -0.44 16
2 C -0.10 -0.52 2.92 -90.62 -0.26 -0.78 16
3 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16
4 C -0.11 -0.67 4.60 -26.73 -0.12 -0.79 16
5 C 0.05 0.36 4.59 -3.83 -0.02 0.34 16
6 N -0.53 -4.38 4.66 -232.30 -1.08 -5.46 16
7 C 0.02 0.14 9.13 60.07 0.55 0.69 16
8 C 0.07 0.63 2.71 -65.56 -0.18 0.45 16
9 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
10 C -0.12 -1.00 5.33 -24.89 -0.13 -1.13 16
11 C 0.10 1.08 6.49 -3.06 -0.02 1.06 16
12 N -0.62 -8.96 3.33 -170.52 -0.57 -9.53 16
13 C 0.55 10.38 7.87 -10.98 -0.09 10.29 16
14 O -0.52 -11.72 16.12 5.56 0.09 -11.64 16
15 C -0.12 -2.35 5.35 36.01 0.19 -2.16 16
16 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16
17 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16
18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16
19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16
20 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16
21 Si 0.86 21.96 27.74 -169.99 -4.71 17.25 16
22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16
23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16
25 C 0.12 1.45 5.34 -2.53 -0.01 1.44 16
26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
27 H 0.06 0.29 6.57 -51.93 -0.34 -0.05 16
28 H 0.05 0.26 8.14 -51.92 -0.42 -0.17 16
29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16
32 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16
33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
34 H 0.06 0.38 6.67 -51.93 -0.35 0.03 16
35 H 0.03 0.23 8.07 -51.93 -0.42 -0.19 16
36 H 0.08 0.52 5.17 -51.93 -0.27 0.25 16
37 H 0.03 0.20 8.07 -51.93 -0.42 -0.22 16
38 H 0.07 0.59 6.73 -51.93 -0.35 0.24 16
39 H 0.07 0.48 6.73 -51.93 -0.35 0.13 16
40 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16
41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
44 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16
45 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16
46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16
47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
48 H 0.07 0.99 7.69 -51.92 -0.40 0.59 16
LS Contribution 387.22 15.07 5.84 5.84
Total: -1.00 -33.30 387.22 -9.66 -42.97
By element:
Atomic # 1 Polarization: 4.45 SS G_CDS: -8.80 Total: -4.35 kcal
Atomic # 6 Polarization: -4.31 SS G_CDS: 0.79 Total: -3.51 kcal
Atomic # 7 Polarization: -40.00 SS G_CDS: -0.87 Total: -40.87 kcal
Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal
Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -33.30 -9.66 -42.97 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188982565.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.916 kcal
(2) G-P(sol) polarization free energy of solvation -33.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.882 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds