Wall clock time and date at job start Tue Mar 31 2020 11:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 C 1.52993 * 109.47131 * 239.99682 * 2 1 3 5 5 C 1.53000 * 109.47428 * 295.00369 * 4 2 1 6 6 N 1.46896 * 109.47678 * 180.02562 * 5 4 2 7 7 C 1.46902 * 111.00076 * 66.04072 * 6 5 4 8 8 C 1.46898 * 111.00450 * 189.99747 * 6 5 4 9 9 H 1.08996 * 110.88569 * 297.91884 * 8 6 5 10 10 C 1.55160 * 111.00210 * 61.83693 * 8 6 5 11 11 C 1.54324 * 102.93972 * 153.57840 * 10 8 6 12 12 N 1.47021 * 107.27373 * 337.80430 * 11 10 8 13 13 C 1.34776 * 125.65252 * 178.97637 * 12 11 10 14 14 O 1.21271 * 120.00333 * 179.97438 * 13 12 11 15 15 C 1.50703 * 119.99491 * 359.96206 * 13 12 11 16 16 S 1.81000 * 109.46931 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99919 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99772 * 180.02562 * 17 16 15 20 20 N 1.31639 * 119.99849 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00351 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47302 * 90.00152 * 21 19 17 23 23 H 1.48498 * 109.47230 * 210.00564 * 21 19 17 24 24 H 1.48506 * 109.46849 * 330.00074 * 21 19 17 25 25 C 1.47422 * 108.70131 * 358.94145 * 12 11 10 26 26 H 1.08996 * 109.47100 * 59.99932 * 1 2 3 27 27 H 1.08994 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46985 * 300.00143 * 1 2 3 29 29 H 1.09001 * 109.46853 * 119.99654 * 2 1 3 30 30 H 1.08998 * 109.47345 * 59.99976 * 3 2 1 31 31 H 1.08999 * 109.47193 * 180.02562 * 3 2 1 32 32 H 1.09010 * 109.47122 * 299.99796 * 3 2 1 33 33 H 1.09001 * 109.47157 * 54.99882 * 4 2 1 34 34 H 1.09000 * 109.47529 * 175.00035 * 4 2 1 35 35 H 1.09001 * 109.46554 * 299.99883 * 5 4 2 36 36 H 1.09000 * 109.47037 * 59.99365 * 5 4 2 37 37 H 1.08997 * 109.47288 * 54.72553 * 7 6 5 38 38 H 1.09003 * 109.47303 * 174.72780 * 7 6 5 39 39 H 1.09003 * 109.47459 * 294.72413 * 7 6 5 40 40 H 1.08995 * 110.71762 * 271.93991 * 10 8 6 41 41 H 1.08999 * 110.71962 * 35.21242 * 10 8 6 42 42 H 1.09003 * 109.88407 * 218.38762 * 11 10 8 43 43 H 1.08998 * 109.88232 * 97.22539 * 11 10 8 44 44 H 1.09006 * 109.47107 * 299.99779 * 15 13 12 45 45 H 1.08997 * 109.47214 * 59.99664 * 15 13 12 46 46 H 0.96998 * 119.99948 * 179.97438 * 20 19 17 47 47 H 1.08996 * 110.37113 * 265.28483 * 25 12 11 48 48 H 1.09007 * 110.46124 * 143.01264 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6352 -2.1955 -1.1879 6 7 2.1254 -2.8882 -2.3869 7 6 3.5936 -2.9295 -2.4078 8 6 1.5593 -4.2404 -2.4822 9 1 1.8633 -4.8498 -1.6312 10 6 0.0135 -4.1887 -2.6063 11 6 -0.3173 -5.4982 -3.3527 12 7 0.8996 -5.9137 -4.0657 13 6 1.0278 -7.0228 -4.8205 14 8 2.0834 -7.2669 -5.3653 15 6 -0.1407 -7.9599 -4.9873 16 16 0.3430 -9.3444 -6.0480 17 6 -1.1659 -10.2540 -6.0708 18 1 -2.0232 -9.8917 -5.5231 19 6 -1.2523 -11.4368 -6.7919 20 7 -2.3795 -12.1167 -6.8086 21 14 0.2307 -12.0640 -7.7388 22 1 1.0400 -12.9481 -6.8622 23 1 -0.2275 -12.8292 -8.9261 24 1 1.0585 -10.9131 -8.1810 25 6 1.9561 -4.9156 -3.8188 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6054 -0.2618 -2.1369 34 1 3.1263 -0.6444 -1.2951 35 1 2.0698 -2.6549 -0.3001 36 1 0.5489 -2.2724 -1.1419 37 1 3.9578 -3.3753 -1.4822 38 1 3.9283 -3.5276 -3.2554 39 1 3.9844 -1.9162 -2.5015 40 1 -0.4522 -4.1782 -1.6209 41 1 -0.2977 -3.3226 -3.1903 42 1 -1.1236 -5.3252 -4.0655 43 1 -0.6098 -6.2682 -2.6388 44 1 -0.4445 -8.3391 -4.0115 45 1 -0.9731 -7.4249 -5.4444 46 1 -2.4400 -12.9431 -7.3128 47 1 1.9789 -4.1804 -4.6231 48 1 2.9264 -5.4033 -3.7240 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188982565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:01 Heat of formation + Delta-G solvation = -65.956894 kcal Electronic energy + Delta-G solvation = -23898.542467 eV Core-core repulsion = 20499.236733 eV Total energy + Delta-G solvation = -3399.305734 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23442 -39.55113 -37.88112 -36.17705 -34.68053 -32.55044 -31.08176 -30.35734 -28.70672 -27.93849 -27.84996 -26.85056 -24.00000 -23.18988 -21.14570 -20.80155 -20.69568 -19.62182 -18.21277 -17.82390 -17.14089 -16.71369 -16.53464 -16.09038 -15.76527 -15.63480 -15.53183 -15.14181 -14.90856 -14.60111 -14.34864 -14.23947 -13.87973 -13.83262 -13.50611 -13.36617 -13.32646 -13.04614 -13.02183 -12.97096 -12.68728 -12.67566 -12.21121 -12.11357 -11.95946 -11.88513 -11.84793 -11.47533 -11.41281 -11.25124 -11.17898 -11.05213 -10.55780 -9.77139 -9.36120 -9.02437 -8.52308 -6.23849 0.93990 1.30615 1.43791 1.47176 1.51870 1.98054 2.24378 2.65839 2.85730 2.88528 3.27985 3.62285 3.74991 3.96721 3.98823 4.05018 4.14097 4.14777 4.25669 4.30377 4.38167 4.39391 4.43964 4.56466 4.63693 4.64541 4.74404 4.78553 4.82701 4.85542 4.88795 4.94425 5.02737 5.03229 5.10042 5.15209 5.20368 5.22360 5.26893 5.39302 5.51802 5.58225 5.70113 6.04566 6.08482 6.10541 6.31683 6.92659 7.00780 8.59938 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.038902 B = 0.002172 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.589294 B =12888.670222 C =13491.314942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.105 4.105 5 C 0.054 3.946 6 N -0.536 5.536 7 C 0.018 3.982 8 C 0.077 3.923 9 H 0.058 0.942 10 C -0.109 4.109 11 C 0.091 3.909 12 N -0.616 5.616 13 C 0.548 3.452 14 O -0.565 6.565 15 C -0.101 4.101 16 S -0.176 6.176 17 C -0.528 4.528 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.238 1.238 25 C 0.117 3.883 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.277 0.723 47 H 0.074 0.926 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 27.598 16.529 32.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.073 4.073 6 N -0.260 5.260 7 C -0.130 4.130 8 C -0.032 4.032 9 H 0.076 0.924 10 C -0.147 4.147 11 C -0.031 4.031 12 N -0.350 5.350 13 C 0.336 3.664 14 O -0.443 6.443 15 C -0.252 4.252 16 S 0.050 5.950 17 C -0.676 4.676 18 H 0.082 0.918 19 C -0.159 4.159 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.182 1.182 24 H -0.162 1.162 25 C -0.006 4.006 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.269 27.295 15.220 32.327 hybrid contribution -0.691 -1.012 0.745 1.434 sum 7.578 26.283 15.965 31.672 Atomic orbital electron populations 1.21896 0.94895 1.02042 1.01802 1.21078 0.96226 0.96274 0.97791 1.21825 1.00916 0.95772 1.01890 1.21585 1.00819 0.93716 0.98166 1.22285 1.01239 0.94317 0.89426 1.61999 1.08174 1.15341 1.40501 1.22492 0.86974 1.02950 1.00573 1.22654 0.95977 0.89500 0.95067 0.92420 1.22695 0.93518 0.96435 1.02089 1.22381 0.86748 0.97790 0.96223 1.48333 1.15478 1.22075 1.49157 1.19679 0.88433 0.80615 0.77714 1.90680 1.30459 1.74459 1.48750 1.23194 0.99888 0.97665 1.04447 1.84729 1.20213 1.25132 1.64880 1.22431 0.97578 1.10856 1.36727 0.91825 1.25544 0.98756 0.95492 0.96091 1.70013 1.26986 1.16520 1.41755 0.85881 0.80096 0.80754 0.79734 1.18670 1.18180 1.16229 1.22194 0.90680 0.89910 0.97819 0.92750 0.92225 0.92643 0.91400 0.92411 0.92757 0.92766 0.91645 0.92089 0.94864 0.89406 0.95251 0.92003 0.89957 0.87598 0.88743 0.89969 0.90063 0.87044 0.87030 0.91327 0.90770 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.95 71.98 0.64 -0.58 16 2 C -0.09 -0.82 2.92 -10.80 -0.03 -0.85 16 3 C -0.15 -1.22 9.19 71.98 0.66 -0.56 16 4 C -0.10 -1.05 4.60 30.59 0.14 -0.91 16 5 C 0.05 0.60 4.59 86.30 0.40 0.99 16 6 N -0.54 -7.70 4.66 -888.88 -4.14 -11.85 16 7 C 0.02 0.25 9.13 127.69 1.17 1.42 16 8 C 0.08 1.26 2.71 46.31 0.13 1.39 16 9 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 10 C -0.11 -1.43 5.33 31.78 0.17 -1.26 16 11 C 0.09 1.69 6.49 86.73 0.56 2.25 16 12 N -0.62 -16.82 3.33 -811.80 -2.70 -19.52 16 13 C 0.55 20.43 7.87 87.66 0.69 21.12 16 14 O -0.56 -25.74 16.12 -3.00 -0.05 -25.79 16 15 C -0.10 -3.99 5.35 71.24 0.38 -3.61 16 16 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 17 C -0.53 -31.02 10.04 67.95 0.68 -30.34 16 18 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 19 C 0.05 2.76 5.50 84.86 0.47 3.23 16 20 N -0.91 -55.78 13.97 21.65 0.30 -55.48 16 21 Si 0.91 45.36 27.74 68.60 1.90 47.27 16 22 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.89 6.74 99.48 0.67 -11.21 16 25 C 0.12 2.73 5.34 86.86 0.46 3.20 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.46 6.57 -2.39 -0.02 0.44 16 28 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.63 6.67 -2.39 -0.02 0.62 16 35 H 0.03 0.38 8.07 -2.39 -0.02 0.36 16 36 H 0.09 0.84 5.17 -2.39 -0.01 0.83 16 37 H 0.03 0.39 8.07 -2.39 -0.02 0.37 16 38 H 0.06 0.98 6.73 -2.39 -0.02 0.97 16 39 H 0.08 0.97 6.73 -2.39 -0.02 0.96 16 40 H 0.11 0.91 7.88 -2.39 -0.02 0.89 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 45 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 46 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 47 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.06 1.60 7.69 -2.38 -0.02 1.58 16 Total: -1.00 -72.11 387.22 1.65 -70.46 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.87 Total: 9.56 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 6.52 Total: -4.51 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -6.54 Total: -86.84 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.27 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -72.11 1.65 -70.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188982565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.505 kcal (2) G-P(sol) polarization free energy of solvation -72.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds