Wall clock time and date at job start Tue Mar 31 2020 11:00:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47162 * 2 1
4 4 C 1.52993 * 109.47131 * 239.99682 * 2 1 3
5 5 C 1.53000 * 109.47428 * 295.00369 * 4 2 1
6 6 N 1.46896 * 109.47678 * 180.02562 * 5 4 2
7 7 C 1.46902 * 111.00076 * 66.04072 * 6 5 4
8 8 C 1.46898 * 111.00450 * 189.99747 * 6 5 4
9 9 H 1.08996 * 110.88569 * 297.91884 * 8 6 5
10 10 C 1.55160 * 111.00210 * 61.83693 * 8 6 5
11 11 C 1.54324 * 102.93972 * 153.57840 * 10 8 6
12 12 N 1.47021 * 107.27373 * 337.80430 * 11 10 8
13 13 C 1.34776 * 125.65252 * 178.97637 * 12 11 10
14 14 O 1.21271 * 120.00333 * 179.97438 * 13 12 11
15 15 C 1.50703 * 119.99491 * 359.96206 * 13 12 11
16 16 S 1.81000 * 109.46931 * 180.02562 * 15 13 12
17 17 C 1.76200 * 100.00013 * 179.97438 * 16 15 13
18 18 H 1.07994 * 119.99919 * 359.97438 * 17 16 15
19 19 C 1.38799 * 119.99772 * 180.02562 * 17 16 15
20 20 N 1.31639 * 119.99849 * 179.97438 * 19 17 16
21 21 Si 1.86797 * 120.00351 * 359.97438 * 19 17 16
22 22 H 1.48497 * 109.47302 * 90.00152 * 21 19 17
23 23 H 1.48498 * 109.47230 * 210.00564 * 21 19 17
24 24 H 1.48506 * 109.46849 * 330.00074 * 21 19 17
25 25 C 1.47422 * 108.70131 * 358.94145 * 12 11 10
26 26 H 1.08996 * 109.47100 * 59.99932 * 1 2 3
27 27 H 1.08994 * 109.47095 * 180.02562 * 1 2 3
28 28 H 1.09008 * 109.46985 * 300.00143 * 1 2 3
29 29 H 1.09001 * 109.46853 * 119.99654 * 2 1 3
30 30 H 1.08998 * 109.47345 * 59.99976 * 3 2 1
31 31 H 1.08999 * 109.47193 * 180.02562 * 3 2 1
32 32 H 1.09010 * 109.47122 * 299.99796 * 3 2 1
33 33 H 1.09001 * 109.47157 * 54.99882 * 4 2 1
34 34 H 1.09000 * 109.47529 * 175.00035 * 4 2 1
35 35 H 1.09001 * 109.46554 * 299.99883 * 5 4 2
36 36 H 1.09000 * 109.47037 * 59.99365 * 5 4 2
37 37 H 1.08997 * 109.47288 * 54.72553 * 7 6 5
38 38 H 1.09003 * 109.47303 * 174.72780 * 7 6 5
39 39 H 1.09003 * 109.47459 * 294.72413 * 7 6 5
40 40 H 1.08995 * 110.71762 * 271.93991 * 10 8 6
41 41 H 1.08999 * 110.71962 * 35.21242 * 10 8 6
42 42 H 1.09003 * 109.88407 * 218.38762 * 11 10 8
43 43 H 1.08998 * 109.88232 * 97.22539 * 11 10 8
44 44 H 1.09006 * 109.47107 * 299.99779 * 15 13 12
45 45 H 1.08997 * 109.47214 * 59.99664 * 15 13 12
46 46 H 0.96998 * 119.99948 * 179.97438 * 20 19 17
47 47 H 1.08996 * 110.37113 * 265.28483 * 25 12 11
48 48 H 1.09007 * 110.46124 * 143.01264 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 1.6352 -2.1955 -1.1879
6 7 2.1254 -2.8882 -2.3869
7 6 3.5936 -2.9295 -2.4078
8 6 1.5593 -4.2404 -2.4822
9 1 1.8633 -4.8498 -1.6312
10 6 0.0135 -4.1887 -2.6063
11 6 -0.3173 -5.4982 -3.3527
12 7 0.8996 -5.9137 -4.0657
13 6 1.0278 -7.0228 -4.8205
14 8 2.0834 -7.2669 -5.3653
15 6 -0.1407 -7.9599 -4.9873
16 16 0.3430 -9.3444 -6.0480
17 6 -1.1659 -10.2540 -6.0708
18 1 -2.0232 -9.8917 -5.5231
19 6 -1.2523 -11.4368 -6.7919
20 7 -2.3795 -12.1167 -6.8086
21 14 0.2307 -12.0640 -7.7388
22 1 1.0400 -12.9481 -6.8622
23 1 -0.2275 -12.8292 -8.9261
24 1 1.0585 -10.9131 -8.1810
25 6 1.9561 -4.9156 -3.8188
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 1.8933 -0.5138 0.8900
30 1 1.6767 1.9563 0.8899
31 1 3.1300 1.4425 -0.0005
32 1 1.6767 1.9563 -0.8901
33 1 1.6054 -0.2618 -2.1369
34 1 3.1263 -0.6444 -1.2951
35 1 2.0698 -2.6549 -0.3001
36 1 0.5489 -2.2724 -1.1419
37 1 3.9578 -3.3753 -1.4822
38 1 3.9283 -3.5276 -3.2554
39 1 3.9844 -1.9162 -2.5015
40 1 -0.4522 -4.1782 -1.6209
41 1 -0.2977 -3.3226 -3.1903
42 1 -1.1236 -5.3252 -4.0655
43 1 -0.6098 -6.2682 -2.6388
44 1 -0.4445 -8.3391 -4.0115
45 1 -0.9731 -7.4249 -5.4444
46 1 -2.4400 -12.9431 -7.3128
47 1 1.9789 -4.1804 -4.6231
48 1 2.9264 -5.4033 -3.7240
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001188982565.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:01
Heat of formation + Delta-G solvation = -65.956894 kcal
Electronic energy + Delta-G solvation = -23898.542467 eV
Core-core repulsion = 20499.236733 eV
Total energy + Delta-G solvation = -3399.305734 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.23442 -39.55113 -37.88112 -36.17705 -34.68053 -32.55044 -31.08176 -30.35734
-28.70672 -27.93849 -27.84996 -26.85056 -24.00000 -23.18988 -21.14570 -20.80155
-20.69568 -19.62182 -18.21277 -17.82390 -17.14089 -16.71369 -16.53464 -16.09038
-15.76527 -15.63480 -15.53183 -15.14181 -14.90856 -14.60111 -14.34864 -14.23947
-13.87973 -13.83262 -13.50611 -13.36617 -13.32646 -13.04614 -13.02183 -12.97096
-12.68728 -12.67566 -12.21121 -12.11357 -11.95946 -11.88513 -11.84793 -11.47533
-11.41281 -11.25124 -11.17898 -11.05213 -10.55780 -9.77139 -9.36120 -9.02437
-8.52308 -6.23849 0.93990 1.30615 1.43791 1.47176 1.51870 1.98054
2.24378 2.65839 2.85730 2.88528 3.27985 3.62285 3.74991 3.96721
3.98823 4.05018 4.14097 4.14777 4.25669 4.30377 4.38167 4.39391
4.43964 4.56466 4.63693 4.64541 4.74404 4.78553 4.82701 4.85542
4.88795 4.94425 5.02737 5.03229 5.10042 5.15209 5.20368 5.22360
5.26893 5.39302 5.51802 5.58225 5.70113 6.04566 6.08482 6.10541
6.31683 6.92659 7.00780 8.59938
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.038902 B = 0.002172 C = 0.002075
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 719.589294 B =12888.670222 C =13491.314942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.095 4.095
3 C -0.147 4.147
4 C -0.105 4.105
5 C 0.054 3.946
6 N -0.536 5.536
7 C 0.018 3.982
8 C 0.077 3.923
9 H 0.058 0.942
10 C -0.109 4.109
11 C 0.091 3.909
12 N -0.616 5.616
13 C 0.548 3.452
14 O -0.565 6.565
15 C -0.101 4.101
16 S -0.176 6.176
17 C -0.528 4.528
18 H 0.064 0.936
19 C 0.047 3.953
20 N -0.915 5.915
21 Si 0.913 3.087
22 H -0.262 1.262
23 H -0.258 1.258
24 H -0.238 1.238
25 C 0.117 3.883
26 H 0.053 0.947
27 H 0.059 0.941
28 H 0.054 0.946
29 H 0.068 0.932
30 H 0.057 0.943
31 H 0.053 0.947
32 H 0.053 0.947
33 H 0.065 0.935
34 H 0.060 0.940
35 H 0.033 0.967
36 H 0.088 0.912
37 H 0.029 0.971
38 H 0.061 0.939
39 H 0.082 0.918
40 H 0.106 0.894
41 H 0.094 0.906
42 H 0.082 0.918
43 H 0.081 0.919
44 H 0.111 0.889
45 H 0.112 0.888
46 H 0.277 0.723
47 H 0.074 0.926
48 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.988 27.598 16.529 32.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.114 4.114
3 C -0.204 4.204
4 C -0.143 4.143
5 C -0.073 4.073
6 N -0.260 5.260
7 C -0.130 4.130
8 C -0.032 4.032
9 H 0.076 0.924
10 C -0.147 4.147
11 C -0.031 4.031
12 N -0.350 5.350
13 C 0.336 3.664
14 O -0.443 6.443
15 C -0.252 4.252
16 S 0.050 5.950
17 C -0.676 4.676
18 H 0.082 0.918
19 C -0.159 4.159
20 N -0.553 5.553
21 Si 0.735 3.265
22 H -0.187 1.187
23 H -0.182 1.182
24 H -0.162 1.162
25 C -0.006 4.006
26 H 0.072 0.928
27 H 0.078 0.922
28 H 0.074 0.926
29 H 0.086 0.914
30 H 0.076 0.924
31 H 0.072 0.928
32 H 0.072 0.928
33 H 0.084 0.916
34 H 0.079 0.921
35 H 0.051 0.949
36 H 0.106 0.894
37 H 0.047 0.953
38 H 0.080 0.920
39 H 0.100 0.900
40 H 0.124 0.876
41 H 0.113 0.887
42 H 0.100 0.900
43 H 0.099 0.901
44 H 0.130 0.870
45 H 0.130 0.870
46 H 0.087 0.913
47 H 0.092 0.908
48 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 8.269 27.295 15.220 32.327
hybrid contribution -0.691 -1.012 0.745 1.434
sum 7.578 26.283 15.965 31.672
Atomic orbital electron populations
1.21896 0.94895 1.02042 1.01802 1.21078 0.96226 0.96274 0.97791
1.21825 1.00916 0.95772 1.01890 1.21585 1.00819 0.93716 0.98166
1.22285 1.01239 0.94317 0.89426 1.61999 1.08174 1.15341 1.40501
1.22492 0.86974 1.02950 1.00573 1.22654 0.95977 0.89500 0.95067
0.92420 1.22695 0.93518 0.96435 1.02089 1.22381 0.86748 0.97790
0.96223 1.48333 1.15478 1.22075 1.49157 1.19679 0.88433 0.80615
0.77714 1.90680 1.30459 1.74459 1.48750 1.23194 0.99888 0.97665
1.04447 1.84729 1.20213 1.25132 1.64880 1.22431 0.97578 1.10856
1.36727 0.91825 1.25544 0.98756 0.95492 0.96091 1.70013 1.26986
1.16520 1.41755 0.85881 0.80096 0.80754 0.79734 1.18670 1.18180
1.16229 1.22194 0.90680 0.89910 0.97819 0.92750 0.92225 0.92643
0.91400 0.92411 0.92757 0.92766 0.91645 0.92089 0.94864 0.89406
0.95251 0.92003 0.89957 0.87598 0.88743 0.89969 0.90063 0.87044
0.87030 0.91327 0.90770 0.92126
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.23 8.95 71.98 0.64 -0.58 16
2 C -0.09 -0.82 2.92 -10.80 -0.03 -0.85 16
3 C -0.15 -1.22 9.19 71.98 0.66 -0.56 16
4 C -0.10 -1.05 4.60 30.59 0.14 -0.91 16
5 C 0.05 0.60 4.59 86.30 0.40 0.99 16
6 N -0.54 -7.70 4.66 -888.88 -4.14 -11.85 16
7 C 0.02 0.25 9.13 127.69 1.17 1.42 16
8 C 0.08 1.26 2.71 46.31 0.13 1.39 16
9 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
10 C -0.11 -1.43 5.33 31.78 0.17 -1.26 16
11 C 0.09 1.69 6.49 86.73 0.56 2.25 16
12 N -0.62 -16.82 3.33 -811.80 -2.70 -19.52 16
13 C 0.55 20.43 7.87 87.66 0.69 21.12 16
14 O -0.56 -25.74 16.12 -3.00 -0.05 -25.79 16
15 C -0.10 -3.99 5.35 71.24 0.38 -3.61 16
16 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16
17 C -0.53 -31.02 10.04 67.95 0.68 -30.34 16
18 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16
19 C 0.05 2.76 5.50 84.86 0.47 3.23 16
20 N -0.91 -55.78 13.97 21.65 0.30 -55.48 16
21 Si 0.91 45.36 27.74 68.60 1.90 47.27 16
22 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16
23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16
24 H -0.24 -11.89 6.74 99.48 0.67 -11.21 16
25 C 0.12 2.73 5.34 86.86 0.46 3.20 16
26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
27 H 0.06 0.46 6.57 -2.39 -0.02 0.44 16
28 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16
29 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16
30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16
31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16
32 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16
33 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16
34 H 0.06 0.63 6.67 -2.39 -0.02 0.62 16
35 H 0.03 0.38 8.07 -2.39 -0.02 0.36 16
36 H 0.09 0.84 5.17 -2.39 -0.01 0.83 16
37 H 0.03 0.39 8.07 -2.39 -0.02 0.37 16
38 H 0.06 0.98 6.73 -2.39 -0.02 0.97 16
39 H 0.08 0.97 6.73 -2.39 -0.02 0.96 16
40 H 0.11 0.91 7.88 -2.39 -0.02 0.89 16
41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16
42 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16
43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
44 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16
45 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16
46 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16
47 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
48 H 0.06 1.60 7.69 -2.38 -0.02 1.58 16
Total: -1.00 -72.11 387.22 1.65 -70.46
By element:
Atomic # 1 Polarization: 8.70 SS G_CDS: 0.87 Total: 9.56 kcal
Atomic # 6 Polarization: -11.03 SS G_CDS: 6.52 Total: -4.51 kcal
Atomic # 7 Polarization: -80.30 SS G_CDS: -6.54 Total: -86.84 kcal
Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal
Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.27 kcal
Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal
Total: -72.11 1.65 -70.46 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188982565.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.505 kcal
(2) G-P(sol) polarization free energy of solvation -72.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.957 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds