Wall clock time and date at job start Tue Mar 31 2020 11:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.53001 * 109.47192 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47058 * 184.56933 * 4 3 2 6 6 C 1.46903 * 111.00073 * 160.59410 * 5 4 3 7 7 C 1.50708 * 109.46980 * 288.30107 * 6 5 4 8 8 H 1.07993 * 119.99930 * 355.55465 * 7 6 5 9 9 C 1.37876 * 119.99485 * 175.55815 * 7 6 5 10 10 N 1.31517 * 119.99838 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00604 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46809 * 89.99482 * 11 9 7 13 13 H 1.48490 * 109.47304 * 210.00165 * 11 9 7 14 14 H 1.48502 * 109.46844 * 330.00097 * 11 9 7 15 15 C 1.46893 * 111.00237 * 284.54953 * 5 4 3 16 16 C 1.50700 * 109.47462 * 170.00229 * 15 5 4 17 17 C 1.41005 * 126.70443 * 94.99454 * 16 15 5 18 18 C 1.36837 * 103.88060 * 179.97438 * 17 16 15 19 19 C 1.47839 * 126.92382 * 180.02562 * 18 17 16 20 20 C 1.39571 * 120.13757 * 180.02562 * 19 18 17 21 21 C 1.37963 * 119.84999 * 180.02562 * 20 19 18 22 22 C 1.38363 * 120.14476 * 359.97234 * 21 20 19 23 23 C 1.38352 * 120.28807 * 0.02562 * 22 21 20 24 24 C 1.37963 * 120.14685 * 0.02562 * 23 22 21 25 25 O 1.34502 * 106.14628 * 0.26511 * 18 17 16 26 26 N 1.20900 * 111.45009 * 359.52749 * 25 18 17 27 27 H 1.08995 * 109.47238 * 300.00025 * 1 2 3 28 28 H 1.09002 * 109.46863 * 60.00283 * 1 2 3 29 29 H 1.08995 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47634 * 239.99922 * 2 1 3 31 31 H 1.09004 * 109.47340 * 119.99918 * 2 1 3 32 32 H 1.08995 * 109.47050 * 59.99860 * 3 2 1 33 33 H 1.09002 * 109.46986 * 299.99642 * 3 2 1 34 34 H 1.09001 * 109.47203 * 64.56989 * 4 3 2 35 35 H 1.09000 * 109.46706 * 304.57350 * 4 3 2 36 36 H 1.09006 * 109.47195 * 48.29484 * 6 5 4 37 37 H 1.09000 * 109.47556 * 168.29895 * 6 5 4 38 38 H 0.96992 * 120.00402 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.47608 * 49.99965 * 15 5 4 40 40 H 1.09001 * 109.47106 * 290.00008 * 15 5 4 41 41 H 1.07997 * 128.05999 * 359.95354 * 17 16 15 42 42 H 1.07997 * 120.07819 * 359.97438 * 20 19 18 43 43 H 1.07995 * 119.92942 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.85179 * 179.74551 * 22 21 20 45 45 H 1.08004 * 119.92638 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.06986 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8231 0.1110 6 6 5.4545 2.8518 0.5710 7 6 5.5117 2.4636 2.0261 8 1 4.5979 2.2898 2.5749 9 6 6.7306 2.3304 2.6566 10 7 6.7805 1.9921 3.9265 11 14 8.3111 2.6305 1.7072 12 1 8.6904 4.0620 1.8172 13 1 9.3949 1.7863 2.2708 14 1 8.1042 2.2817 0.2786 15 6 3.9109 3.5379 -1.1636 16 6 4.1888 5.0040 -0.9529 17 6 5.4169 5.6666 -1.1554 18 6 5.1457 6.9675 -0.8292 19 6 6.0877 8.1064 -0.8624 20 6 5.6572 9.3828 -0.4973 21 6 6.5412 10.4415 -0.5310 22 6 7.8521 10.2398 -0.9251 23 6 8.2851 8.9770 -1.2882 24 6 7.4110 7.9100 -1.2599 25 8 3.8507 7.0002 -0.4671 26 7 3.3412 5.9068 -0.5485 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 1.0011 -0.9272 35 1 3.9329 0.8595 0.8471 36 1 6.0453 2.1486 -0.0161 37 1 5.8574 3.8570 0.4470 38 1 7.6380 1.8981 4.3700 39 1 2.8941 3.4106 -1.5352 40 1 4.6163 3.1352 -1.8905 41 1 6.3534 5.2453 -1.4897 42 1 4.6341 9.5417 -0.1899 43 1 6.2093 11.4298 -0.2492 44 1 8.5390 11.0727 -0.9537 45 1 9.3096 8.8263 -1.5953 46 1 7.7505 6.9246 -1.5432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206844092.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:22 Heat of formation + Delta-G solvation = 78.854905 kcal Electronic energy + Delta-G solvation = -25583.449710 eV Core-core repulsion = 22054.979535 eV Total energy + Delta-G solvation = -3528.470174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.58156 -39.18625 -37.58477 -34.72918 -33.61670 -33.05463 -32.29184 -31.12874 -29.44894 -28.94728 -28.19309 -25.31490 -23.75663 -23.10611 -22.69075 -21.88438 -20.82138 -20.54922 -19.36475 -17.83927 -17.32960 -16.82992 -16.31693 -15.73031 -15.18728 -14.99137 -14.79780 -14.50690 -14.21912 -13.77036 -13.67418 -13.53919 -13.30682 -13.07180 -12.96194 -12.55944 -12.35283 -12.29187 -11.99508 -11.82498 -11.39457 -11.25331 -10.99634 -10.91413 -10.80974 -10.71921 -10.51505 -10.27688 -10.17770 -10.08477 -9.94933 -9.61245 -9.32017 -9.14741 -8.57853 -8.30908 -7.45166 -6.05690 -4.02320 0.62139 1.21757 2.07534 2.54564 3.16594 3.24805 3.31326 3.32262 3.69573 4.39523 4.41625 4.47482 4.71970 4.76215 4.81997 4.92139 5.18631 5.22985 5.25016 5.26140 5.29307 5.37065 5.41635 5.46264 5.57788 5.67958 5.71276 5.83608 5.84069 5.94717 6.00695 6.05595 6.11519 6.13391 6.22312 6.28455 6.30181 6.33653 6.35529 6.45485 6.65995 6.73128 6.73336 6.87632 6.94232 7.59034 7.84271 7.97855 8.55613 8.64835 9.05131 9.55918 11.07665 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.004106 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.128563 B = 6818.457111 C = 8828.700591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.063 3.937 5 N -0.521 5.521 6 C 0.158 3.842 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.868 3.132 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.127 3.873 16 C 0.046 3.954 17 C -0.202 4.202 18 C -0.005 4.005 19 C -0.011 4.011 20 C -0.097 4.097 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.093 4.093 25 O 0.105 5.895 26 N -0.345 5.345 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.021 0.979 35 H 0.092 0.908 36 H -0.009 1.009 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.168 0.832 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 10.602 -13.711 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.064 4.064 5 N -0.246 5.246 6 C 0.031 3.969 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.696 3.304 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.002 4.002 16 C -0.113 4.113 17 C -0.224 4.224 18 C -0.068 4.068 19 C -0.012 4.012 20 C -0.115 4.115 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.111 4.111 25 O 0.036 5.964 26 N -0.047 5.047 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.110 0.890 36 H 0.009 0.991 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.186 0.814 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.068 10.735 -12.869 17.038 hybrid contribution 2.334 -0.484 -1.075 2.615 sum -0.734 10.251 -13.944 17.322 Atomic orbital electron populations 1.21753 0.96318 1.00975 1.01635 1.21494 0.95354 0.97451 1.01872 1.21607 0.95751 0.95709 1.02059 1.22055 0.94211 0.89422 1.00760 1.61904 1.24194 1.14412 1.24107 1.20298 0.83527 0.96041 0.96984 1.21007 0.94520 1.45863 0.92921 0.90086 1.24881 0.98631 0.94965 0.94744 1.69887 1.25505 1.48456 1.09983 0.86957 0.84047 0.78678 0.80755 1.20090 1.21114 1.19204 1.20384 1.01424 0.85520 0.92899 1.23253 0.89917 0.97879 1.00248 1.22575 1.00271 0.92012 1.07524 1.22365 0.86146 0.95139 1.03117 1.17647 0.91493 0.90131 1.01959 1.21318 1.00478 0.91492 0.98235 1.21094 0.93573 0.98942 1.00078 1.21291 0.96044 0.97234 0.98577 1.21063 0.99669 0.92557 1.00273 1.21155 0.91635 0.99772 0.98586 1.84892 1.20763 1.26947 1.63820 1.73761 1.22156 0.91037 1.17726 0.92709 0.93161 0.93233 0.92588 0.91725 0.91095 0.93076 0.96073 0.88973 0.99093 0.95626 0.92693 0.89751 0.93538 0.81445 0.85006 0.85471 0.85770 0.85386 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.11 -1.80 5.25 -26.73 -0.14 -1.94 16 4 C 0.06 1.19 4.82 -3.83 -0.02 1.17 16 5 N -0.52 -11.01 4.38 -237.52 -1.04 -12.05 16 6 C 0.16 3.81 3.68 -4.97 -0.02 3.79 16 7 C -0.50 -14.44 8.84 -34.44 -0.30 -14.75 16 8 H 0.08 2.56 8.03 -52.49 -0.42 2.14 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 11 Si 0.87 21.34 27.56 -169.99 -4.68 16.65 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.23 6.42 56.52 0.36 -5.86 16 15 C 0.13 2.25 5.38 -4.98 -0.03 2.22 16 16 C 0.05 0.84 6.04 -82.20 -0.50 0.34 16 17 C -0.20 -3.35 9.15 -39.04 -0.36 -3.71 16 18 C 0.00 -0.07 7.16 -36.16 -0.26 -0.33 16 19 C -0.01 -0.15 5.87 -104.98 -0.62 -0.76 16 20 C -0.10 -1.12 9.74 -39.19 -0.38 -1.50 16 21 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 22 C -0.11 -1.02 10.04 -39.49 -0.40 -1.42 16 23 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16 24 C -0.09 -1.10 9.59 -39.19 -0.38 -1.48 16 25 O 0.10 1.82 11.04 15.94 0.18 1.99 16 26 N -0.34 -6.56 12.05 33.51 0.40 -6.16 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.76 6.92 -51.93 -0.36 0.40 16 34 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 35 H 0.09 1.96 7.10 -51.93 -0.37 1.59 16 36 H -0.01 -0.21 6.80 -51.93 -0.35 -0.56 16 37 H 0.03 0.63 5.51 -51.93 -0.29 0.34 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 39 H 0.08 1.36 6.69 -51.93 -0.35 1.02 16 40 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.17 2.43 7.47 -52.49 -0.39 2.04 16 42 H 0.13 1.39 7.96 -52.49 -0.42 0.97 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 46 H 0.13 1.41 7.16 -52.48 -0.38 1.03 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -32.41 377.67 -9.89 -42.30 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.14 Total: 1.25 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -4.07 Total: -22.76 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.14 Total: -45.13 kcal Atomic # 8 Polarization: 1.82 SS G_CDS: 0.18 Total: 1.99 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.68 Total: 16.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.41 -9.89 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206844092.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.154 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds