Wall clock time and date at job start Tue Mar 31 2020 11:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.53001 * 109.47192 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47058 * 184.56933 * 4 3 2 6 6 C 1.46903 * 111.00073 * 160.59410 * 5 4 3 7 7 C 1.50708 * 109.46980 * 288.30107 * 6 5 4 8 8 H 1.07993 * 119.99930 * 355.55465 * 7 6 5 9 9 C 1.37876 * 119.99485 * 175.55815 * 7 6 5 10 10 N 1.31517 * 119.99838 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00604 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46809 * 89.99482 * 11 9 7 13 13 H 1.48490 * 109.47304 * 210.00165 * 11 9 7 14 14 H 1.48502 * 109.46844 * 330.00097 * 11 9 7 15 15 C 1.46893 * 111.00237 * 284.54953 * 5 4 3 16 16 C 1.50700 * 109.47462 * 170.00229 * 15 5 4 17 17 C 1.41005 * 126.70443 * 94.99454 * 16 15 5 18 18 C 1.36837 * 103.88060 * 179.97438 * 17 16 15 19 19 C 1.47839 * 126.92382 * 180.02562 * 18 17 16 20 20 C 1.39571 * 120.13757 * 180.02562 * 19 18 17 21 21 C 1.37963 * 119.84999 * 180.02562 * 20 19 18 22 22 C 1.38363 * 120.14476 * 359.97234 * 21 20 19 23 23 C 1.38352 * 120.28807 * 0.02562 * 22 21 20 24 24 C 1.37963 * 120.14685 * 0.02562 * 23 22 21 25 25 O 1.34502 * 106.14628 * 0.26511 * 18 17 16 26 26 N 1.20900 * 111.45009 * 359.52749 * 25 18 17 27 27 H 1.08995 * 109.47238 * 300.00025 * 1 2 3 28 28 H 1.09002 * 109.46863 * 60.00283 * 1 2 3 29 29 H 1.08995 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47634 * 239.99922 * 2 1 3 31 31 H 1.09004 * 109.47340 * 119.99918 * 2 1 3 32 32 H 1.08995 * 109.47050 * 59.99860 * 3 2 1 33 33 H 1.09002 * 109.46986 * 299.99642 * 3 2 1 34 34 H 1.09001 * 109.47203 * 64.56989 * 4 3 2 35 35 H 1.09000 * 109.46706 * 304.57350 * 4 3 2 36 36 H 1.09006 * 109.47195 * 48.29484 * 6 5 4 37 37 H 1.09000 * 109.47556 * 168.29895 * 6 5 4 38 38 H 0.96992 * 120.00402 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.47608 * 49.99965 * 15 5 4 40 40 H 1.09001 * 109.47106 * 290.00008 * 15 5 4 41 41 H 1.07997 * 128.05999 * 359.95354 * 17 16 15 42 42 H 1.07997 * 120.07819 * 359.97438 * 20 19 18 43 43 H 1.07995 * 119.92942 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.85179 * 179.74551 * 22 21 20 45 45 H 1.08004 * 119.92638 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.06986 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8231 0.1110 6 6 5.4545 2.8518 0.5710 7 6 5.5117 2.4636 2.0261 8 1 4.5979 2.2898 2.5749 9 6 6.7306 2.3304 2.6566 10 7 6.7805 1.9921 3.9265 11 14 8.3111 2.6305 1.7072 12 1 8.6904 4.0620 1.8172 13 1 9.3949 1.7863 2.2708 14 1 8.1042 2.2817 0.2786 15 6 3.9109 3.5379 -1.1636 16 6 4.1888 5.0040 -0.9529 17 6 5.4169 5.6666 -1.1554 18 6 5.1457 6.9675 -0.8292 19 6 6.0877 8.1064 -0.8624 20 6 5.6572 9.3828 -0.4973 21 6 6.5412 10.4415 -0.5310 22 6 7.8521 10.2398 -0.9251 23 6 8.2851 8.9770 -1.2882 24 6 7.4110 7.9100 -1.2599 25 8 3.8507 7.0002 -0.4671 26 7 3.3412 5.9068 -0.5485 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 1.0011 -0.9272 35 1 3.9329 0.8595 0.8471 36 1 6.0453 2.1486 -0.0161 37 1 5.8574 3.8570 0.4470 38 1 7.6380 1.8981 4.3700 39 1 2.8941 3.4106 -1.5352 40 1 4.6163 3.1352 -1.8905 41 1 6.3534 5.2453 -1.4897 42 1 4.6341 9.5417 -0.1899 43 1 6.2093 11.4298 -0.2492 44 1 8.5390 11.0727 -0.9537 45 1 9.3096 8.8263 -1.5953 46 1 7.7505 6.9246 -1.5432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206844092.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:21 Heat of formation + Delta-G solvation = 60.374897 kcal Electronic energy + Delta-G solvation = -25584.251063 eV Core-core repulsion = 22054.979535 eV Total energy + Delta-G solvation = -3529.271528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.89927 -39.99402 -39.15057 -35.97833 -35.15310 -34.42117 -33.97231 -31.92288 -30.67838 -30.40884 -29.72232 -26.87793 -24.86002 -24.29177 -24.10900 -22.88786 -22.30468 -21.83323 -20.69068 -19.13244 -18.88531 -18.61126 -17.27439 -16.94610 -16.57760 -16.31094 -16.08952 -15.86244 -15.61471 -15.19541 -14.88988 -14.56170 -14.43856 -14.32212 -14.08102 -13.94165 -13.89745 -13.66322 -13.41604 -13.10688 -12.79821 -12.44472 -12.32921 -12.19356 -12.09756 -11.96578 -11.94435 -11.87696 -11.62794 -11.50273 -11.39514 -11.23235 -11.04872 -10.78701 -9.93374 -9.33154 -9.07971 -8.29707 -6.32853 -0.36419 0.43464 0.90680 1.29939 1.30679 1.33388 1.42819 2.00225 2.31989 2.86718 3.03362 3.10443 3.19840 3.41082 3.89346 4.00162 4.02994 4.03589 4.15233 4.17763 4.20447 4.28327 4.32468 4.44349 4.47732 4.51527 4.57431 4.67031 4.73393 4.77453 4.87858 4.89417 4.90845 5.00190 5.01871 5.07683 5.09394 5.17391 5.29288 5.44738 5.47103 5.48318 5.50739 5.52985 5.54283 5.95023 5.98003 6.32838 6.58878 6.72962 7.25640 7.30049 8.87455 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.004106 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.128563 B = 6818.457111 C = 8828.700591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.103 4.103 4 C 0.066 3.934 5 N -0.545 5.545 6 C 0.172 3.828 7 C -0.513 4.513 8 H 0.029 0.971 9 C 0.007 3.993 10 N -0.949 5.949 11 Si 0.941 3.059 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.242 1.242 15 C 0.130 3.870 16 C 0.030 3.970 17 C -0.220 4.220 18 C 0.006 3.994 19 C -0.045 4.045 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.104 4.104 23 C -0.121 4.121 24 C -0.103 4.103 25 O 0.096 5.904 26 N -0.375 5.375 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.055 0.945 36 H -0.003 1.003 37 H 0.028 0.972 38 H 0.266 0.734 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.187 0.813 42 H 0.132 0.868 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 12.090 -16.413 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.061 4.061 5 N -0.270 5.270 6 C 0.045 3.955 7 C -0.551 4.551 8 H 0.048 0.952 9 C -0.190 4.190 10 N -0.590 5.590 11 Si 0.764 3.236 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.165 1.165 15 C 0.001 3.999 16 C -0.128 4.128 17 C -0.241 4.241 18 C -0.057 4.057 19 C -0.046 4.046 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.122 4.122 23 C -0.139 4.139 24 C -0.122 4.122 25 O 0.029 5.971 26 N -0.079 5.079 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.015 0.985 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.204 0.796 42 H 0.150 0.850 43 H 0.172 0.828 44 H 0.175 0.825 45 H 0.172 0.828 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.261 12.231 -15.592 19.857 hybrid contribution 1.732 -0.822 -0.177 1.925 sum 0.470 11.410 -15.769 19.470 Atomic orbital electron populations 1.21726 0.94652 1.02163 1.01808 1.21472 0.96783 0.95562 1.02022 1.21521 0.93703 0.97422 1.01504 1.22032 0.95936 0.88030 1.00150 1.61764 1.22327 1.16007 1.26867 1.19991 0.85689 0.95754 0.94037 1.21214 0.92869 1.45806 0.95253 0.95224 1.25865 1.02902 0.94500 0.95727 1.70061 1.26732 1.50036 1.12169 0.85794 0.78485 0.78979 0.80321 1.19046 1.20596 1.16520 1.20455 1.02993 0.84891 0.91528 1.23514 0.90725 0.98137 1.00437 1.22813 1.00485 0.92184 1.08656 1.22901 0.85604 0.96066 1.01114 1.17820 0.91904 0.90040 1.04846 1.21499 1.01172 0.91618 0.98364 1.21452 0.93593 0.99475 0.99254 1.21756 0.96218 0.97937 0.96301 1.21435 1.00559 0.92281 0.99594 1.21370 0.91279 1.00910 0.98625 1.84837 1.21741 1.26488 1.64037 1.73736 1.23271 0.91698 1.19203 0.93535 0.92016 0.91554 0.90875 0.93146 0.93802 0.91342 0.93776 0.92647 0.98487 0.95453 0.92492 0.88281 0.91244 0.79580 0.85004 0.82781 0.82487 0.82786 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.91 71.98 0.71 -2.53 16 2 C -0.12 -3.19 5.93 30.60 0.18 -3.00 16 3 C -0.10 -3.31 5.25 30.60 0.16 -3.15 16 4 C 0.07 2.50 4.82 86.30 0.42 2.92 16 5 N -0.54 -23.24 4.38 -905.36 -3.96 -27.20 16 6 C 0.17 8.36 3.68 85.56 0.32 8.67 16 7 C -0.51 -30.57 8.84 25.60 0.23 -30.35 16 8 H 0.03 2.01 8.03 -2.91 -0.02 1.98 16 9 C 0.01 0.42 5.47 84.65 0.46 0.88 16 10 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 11 Si 0.94 43.85 27.56 68.60 1.89 45.74 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.24 -10.20 6.42 99.48 0.64 -9.56 16 15 C 0.13 4.47 5.38 85.56 0.46 4.93 16 16 C 0.03 1.10 6.04 43.47 0.26 1.36 16 17 C -0.22 -7.16 9.15 22.62 0.21 -6.95 16 18 C 0.01 0.20 7.16 24.48 0.18 0.38 16 19 C -0.04 -1.17 5.87 -20.10 -0.12 -1.28 16 20 C -0.11 -2.38 9.74 22.53 0.22 -2.16 16 21 C -0.12 -1.94 10.03 22.23 0.22 -1.72 16 22 C -0.10 -1.48 10.04 22.33 0.22 -1.26 16 23 C -0.12 -1.99 10.03 22.23 0.22 -1.76 16 24 C -0.10 -2.26 9.59 22.52 0.22 -2.04 16 25 O 0.10 3.41 11.04 67.21 0.74 4.16 16 26 N -0.38 -14.57 12.05 -48.84 -0.59 -15.16 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.95 6.92 -2.39 -0.02 1.93 16 34 H 0.04 1.46 8.00 -2.39 -0.02 1.44 16 35 H 0.05 2.49 7.10 -2.39 -0.02 2.47 16 36 H 0.00 -0.12 6.80 -2.38 -0.02 -0.13 16 37 H 0.03 1.33 5.51 -2.39 -0.01 1.31 16 38 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 39 H 0.10 3.08 6.69 -2.39 -0.02 3.06 16 40 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 41 H 0.19 5.10 7.47 -2.91 -0.02 5.08 16 42 H 0.13 2.76 7.96 -2.91 -0.02 2.73 16 43 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 46 H 0.13 2.66 7.16 -2.91 -0.02 2.64 16 Total: -1.00 -74.20 377.67 3.84 -70.36 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.89 Total: 19.46 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 4.57 Total: -37.06 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.25 Total: -102.66 kcal Atomic # 8 Polarization: 3.41 SS G_CDS: 0.74 Total: 4.16 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.89 Total: 45.74 kcal Total: -74.20 3.84 -70.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206844092.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.734 kcal (2) G-P(sol) polarization free energy of solvation -74.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds