Wall clock time and date at job start Tue Mar 31 2020 12:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 H 1.09003 * 109.47320 * 305.00212 * 3 2 1 5 5 C 1.52996 * 109.47252 * 65.00417 * 3 2 1 6 6 C 1.53001 * 109.46810 * 185.00256 * 3 2 1 7 7 N 1.46904 * 109.46957 * 175.00284 * 6 3 2 8 8 C 1.46900 * 110.99869 * 179.97438 * 7 6 3 9 9 H 1.08993 * 109.49803 * 325.06156 * 8 7 6 10 10 C 1.53045 * 109.49545 * 204.99651 * 8 7 6 11 11 C 1.53039 * 109.53694 * 178.65022 * 10 8 7 12 12 C 1.53196 * 109.33748 * 61.35198 * 11 10 8 13 13 N 1.46931 * 108.77131 * 305.41286 * 12 11 10 14 14 C 1.34775 * 120.60689 * 233.57988 * 13 12 11 15 15 O 1.21283 * 120.00376 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99836 * 359.97438 * 14 13 12 17 17 S 1.80998 * 109.47083 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99898 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00017 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00314 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99758 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47090 * 89.99692 * 22 20 18 24 24 H 1.48500 * 109.47084 * 209.99636 * 22 20 18 25 25 H 1.48497 * 109.47110 * 329.99549 * 22 20 18 26 26 C 1.46928 * 118.76737 * 53.55408 * 13 12 11 27 27 H 1.08999 * 109.47130 * 59.99793 * 1 2 3 28 28 H 1.09000 * 109.47644 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46786 * 299.99779 * 1 2 3 30 30 H 1.09002 * 109.46786 * 240.00221 * 2 1 3 31 31 H 1.08999 * 109.46937 * 120.00725 * 2 1 3 32 32 H 1.09003 * 109.47126 * 59.99675 * 5 3 2 33 33 H 1.08998 * 109.47637 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.46861 * 300.00274 * 5 3 2 35 35 H 1.08995 * 109.47570 * 55.00043 * 6 3 2 36 36 H 1.09001 * 109.47212 * 294.99543 * 6 3 2 37 37 H 1.00902 * 111.00132 * 56.04035 * 7 6 3 38 38 H 1.09001 * 109.45732 * 58.63327 * 10 8 7 39 39 H 1.08995 * 109.46248 * 298.67037 * 10 8 7 40 40 H 1.09002 * 109.49756 * 181.31922 * 11 10 8 41 41 H 1.09000 * 109.49883 * 301.38665 * 11 10 8 42 42 H 1.08996 * 109.58760 * 65.17188 * 12 11 10 43 43 H 1.09001 * 109.58519 * 185.59185 * 12 11 10 44 44 H 1.09005 * 109.47141 * 300.00250 * 16 14 13 45 45 H 1.09005 * 109.46868 * 60.00194 * 16 14 13 46 46 H 0.97001 * 120.00501 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.58597 * 186.62384 * 26 13 12 48 48 H 1.09001 * 109.69741 * 66.27202 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4442 -0.1258 7 7 4.0447 2.8274 -0.2461 8 6 5.5080 2.8682 -0.3685 9 1 5.9458 2.0721 0.2336 10 6 6.0241 4.2228 0.1226 11 6 7.5511 4.2539 0.0270 12 6 7.9716 4.0777 -1.4356 13 7 7.3585 2.8494 -1.9591 14 6 8.1159 1.8986 -2.5411 15 8 7.5984 0.8886 -2.9691 16 6 9.6060 2.0904 -2.6601 17 16 10.3357 0.6520 -3.4815 18 6 12.0315 1.1303 -3.4866 19 1 12.3270 2.0765 -3.0580 20 6 12.9876 0.2915 -4.0424 21 7 12.6274 -0.8616 -4.5653 22 14 14.7853 0.7989 -4.0484 23 1 15.4407 0.3139 -2.8072 24 1 15.4628 0.2067 -5.2298 25 1 14.8816 2.2793 -4.1131 26 6 5.9046 2.6767 -1.8358 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0701 1.5874 2.1492 33 1 1.9991 3.1540 1.3076 34 1 0.5491 2.1252 1.3970 35 1 3.8571 0.8799 -1.0113 36 1 4.0030 0.9835 0.7596 37 1 3.7314 3.3879 0.5323 38 1 5.7220 4.3723 1.1592 39 1 5.6053 5.0168 -0.4957 40 1 7.9195 5.2101 0.3988 41 1 7.9697 3.4450 0.6258 42 1 7.6311 4.9330 -2.0192 43 1 9.0571 3.9998 -1.4969 44 1 9.8113 2.9861 -3.2463 45 1 10.0388 2.1997 -1.6657 46 1 13.2955 -1.4480 -4.9534 47 1 5.6268 1.6743 -2.1616 48 1 5.3932 3.4161 -2.4521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207409028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:30 Heat of formation + Delta-G solvation = -59.050668 kcal Electronic energy + Delta-G solvation = -24117.677961 eV Core-core repulsion = 20718.671704 eV Total energy + Delta-G solvation = -3399.006257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.01465 -38.22644 -36.97546 -34.66226 -32.43030 -32.31489 -30.91931 -29.59181 -28.23687 -26.34326 -25.55840 -25.04799 -23.40682 -21.99921 -20.94689 -20.06280 -18.99356 -17.67683 -16.76634 -16.27451 -15.66773 -15.59339 -15.18111 -14.98642 -14.79943 -14.66899 -14.09520 -14.07940 -13.74216 -13.49206 -13.40784 -13.19303 -12.88455 -12.69457 -12.51325 -12.29591 -12.14356 -11.95769 -11.81732 -11.46309 -11.23087 -11.17715 -11.06044 -11.01504 -10.90421 -10.86655 -10.76212 -10.72060 -10.48064 -9.79514 -9.32891 -9.06184 -8.77824 -8.40836 -8.21233 -6.49262 -6.20958 -3.91474 2.93050 3.08332 3.22451 3.25979 3.30420 3.58194 3.91089 4.20773 4.47429 4.59733 4.60525 4.66603 4.69690 4.81489 4.97327 5.02005 5.04677 5.14049 5.19345 5.22974 5.23285 5.31998 5.35409 5.43295 5.44321 5.57988 5.62053 5.66827 5.68745 5.71146 5.73087 5.77173 5.78747 5.80968 5.84195 5.90488 6.01508 6.08328 6.10613 6.12777 6.15801 6.58250 6.88058 7.14341 7.59340 7.61308 8.35711 8.59678 9.24175 10.86466 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.021669 B = 0.002488 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.834152 B =11250.369364 C =12252.042127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.090 4.090 4 H 0.080 0.920 5 C -0.150 4.150 6 C 0.060 3.940 7 N -0.683 5.683 8 C 0.074 3.926 9 H 0.049 0.951 10 C -0.119 4.119 11 C -0.133 4.133 12 C 0.107 3.893 13 N -0.620 5.620 14 C 0.535 3.465 15 O -0.518 6.518 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.127 3.873 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.341 0.659 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.089 0.911 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.055 10.842 12.988 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.109 4.109 4 H 0.098 0.902 5 C -0.208 4.208 6 C -0.069 4.069 7 N -0.316 5.316 8 C -0.037 4.037 9 H 0.067 0.933 10 C -0.157 4.157 11 C -0.172 4.172 12 C -0.017 4.017 13 N -0.356 5.356 14 C 0.323 3.677 15 O -0.392 6.392 16 C -0.300 4.300 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.160 0.840 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.868 9.194 11.568 25.570 hybrid contribution 2.061 1.326 1.496 2.871 sum -18.806 10.520 13.063 25.200 Atomic orbital electron populations 1.21802 0.95804 1.01520 1.01811 1.21549 0.95958 0.96161 1.02239 1.21176 0.94726 0.96290 0.98730 0.90178 1.21908 1.01507 1.00278 0.97074 1.22114 0.94545 0.89453 1.00766 1.60400 1.09945 1.11714 1.49496 1.21863 0.87420 0.97293 0.97129 0.93347 1.21693 0.95870 0.97135 1.01003 1.21908 0.95598 1.02696 0.97005 1.21728 0.99278 0.86948 0.93714 1.48086 1.07294 1.19675 1.60590 1.20334 0.88715 0.82157 0.76525 1.90687 1.73993 1.27662 1.46839 1.23552 0.93851 1.07356 1.05274 1.85411 1.03850 1.19273 1.74976 1.22857 0.92187 1.07793 1.45435 0.90955 1.24996 0.99510 0.94552 0.94562 1.70019 1.34491 1.09358 1.36407 0.86170 0.82727 0.78761 0.77853 1.20289 1.20750 1.19689 1.21400 0.79762 1.03586 0.94955 0.92704 0.92875 0.92652 0.91666 0.92121 0.93050 0.92636 0.92342 0.90560 0.95207 0.83987 0.91996 0.90812 0.90395 0.91337 0.91387 0.89145 0.89261 0.89330 0.92193 0.89256 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.06 16 3 C -0.09 -0.69 2.60 -90.62 -0.24 -0.93 16 4 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -0.97 8.72 37.16 0.32 -0.65 16 6 C 0.06 0.56 4.94 -3.82 -0.02 0.54 16 7 N -0.68 -6.22 6.31 -106.60 -0.67 -6.89 16 8 C 0.07 0.77 2.64 -67.59 -0.18 0.59 16 9 H 0.05 0.59 7.80 -51.93 -0.41 0.19 16 10 C -0.12 -1.00 5.17 -26.69 -0.14 -1.14 16 11 C -0.13 -1.19 6.08 -26.61 -0.16 -1.35 16 12 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 13 N -0.62 -9.15 2.97 -172.76 -0.51 -9.66 16 14 C 0.53 10.48 7.72 -10.98 -0.08 10.39 16 15 O -0.52 -12.15 15.27 5.56 0.08 -12.07 16 16 C -0.15 -3.09 4.50 36.01 0.16 -2.93 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.13 1.68 5.90 -3.71 -0.02 1.66 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.33 6.57 -51.93 -0.34 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.34 6.68 -51.93 -0.35 -0.01 16 34 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 35 H 0.08 0.84 7.57 -51.93 -0.39 0.45 16 36 H 0.03 0.29 8.06 -51.93 -0.42 -0.13 16 37 H 0.34 2.59 6.58 -39.29 -0.26 2.33 16 38 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 44 H 0.09 1.71 7.94 -51.91 -0.41 1.29 16 45 H 0.09 1.69 7.69 -51.91 -0.40 1.29 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.09 1.40 6.49 -51.93 -0.34 1.07 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -33.25 385.55 -10.33 -43.58 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.58 Total: -0.39 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 0.04 Total: -7.34 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.45 Total: -42.11 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.25 -10.33 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207409028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.470 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds