Wall clock time and date at job start Tue Mar 31 2020 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 H 1.09003 * 109.47320 * 305.00212 * 3 2 1 5 5 C 1.52996 * 109.47252 * 65.00417 * 3 2 1 6 6 C 1.53001 * 109.46810 * 185.00256 * 3 2 1 7 7 N 1.46904 * 109.46957 * 175.00284 * 6 3 2 8 8 C 1.46900 * 110.99869 * 179.97438 * 7 6 3 9 9 H 1.08993 * 109.49803 * 325.06156 * 8 7 6 10 10 C 1.53045 * 109.49545 * 204.99651 * 8 7 6 11 11 C 1.53039 * 109.53694 * 178.65022 * 10 8 7 12 12 C 1.53196 * 109.33748 * 61.35198 * 11 10 8 13 13 N 1.46931 * 108.77131 * 305.41286 * 12 11 10 14 14 C 1.34775 * 120.60689 * 233.57988 * 13 12 11 15 15 O 1.21283 * 120.00376 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99836 * 359.97438 * 14 13 12 17 17 S 1.80998 * 109.47083 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99898 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00017 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00314 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99758 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47090 * 89.99692 * 22 20 18 24 24 H 1.48500 * 109.47084 * 209.99636 * 22 20 18 25 25 H 1.48497 * 109.47110 * 329.99549 * 22 20 18 26 26 C 1.46928 * 118.76737 * 53.55408 * 13 12 11 27 27 H 1.08999 * 109.47130 * 59.99793 * 1 2 3 28 28 H 1.09000 * 109.47644 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46786 * 299.99779 * 1 2 3 30 30 H 1.09002 * 109.46786 * 240.00221 * 2 1 3 31 31 H 1.08999 * 109.46937 * 120.00725 * 2 1 3 32 32 H 1.09003 * 109.47126 * 59.99675 * 5 3 2 33 33 H 1.08998 * 109.47637 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.46861 * 300.00274 * 5 3 2 35 35 H 1.08995 * 109.47570 * 55.00043 * 6 3 2 36 36 H 1.09001 * 109.47212 * 294.99543 * 6 3 2 37 37 H 1.00902 * 111.00132 * 56.04035 * 7 6 3 38 38 H 1.09001 * 109.45732 * 58.63327 * 10 8 7 39 39 H 1.08995 * 109.46248 * 298.67037 * 10 8 7 40 40 H 1.09002 * 109.49756 * 181.31922 * 11 10 8 41 41 H 1.09000 * 109.49883 * 301.38665 * 11 10 8 42 42 H 1.08996 * 109.58760 * 65.17188 * 12 11 10 43 43 H 1.09001 * 109.58519 * 185.59185 * 12 11 10 44 44 H 1.09005 * 109.47141 * 300.00250 * 16 14 13 45 45 H 1.09005 * 109.46868 * 60.00194 * 16 14 13 46 46 H 0.97001 * 120.00501 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.58597 * 186.62384 * 26 13 12 48 48 H 1.09001 * 109.69741 * 66.27202 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4442 -0.1258 7 7 4.0447 2.8274 -0.2461 8 6 5.5080 2.8682 -0.3685 9 1 5.9458 2.0721 0.2336 10 6 6.0241 4.2228 0.1226 11 6 7.5511 4.2539 0.0270 12 6 7.9716 4.0777 -1.4356 13 7 7.3585 2.8494 -1.9591 14 6 8.1159 1.8986 -2.5411 15 8 7.5984 0.8886 -2.9691 16 6 9.6060 2.0904 -2.6601 17 16 10.3357 0.6520 -3.4815 18 6 12.0315 1.1303 -3.4866 19 1 12.3270 2.0765 -3.0580 20 6 12.9876 0.2915 -4.0424 21 7 12.6274 -0.8616 -4.5653 22 14 14.7853 0.7989 -4.0484 23 1 15.4407 0.3139 -2.8072 24 1 15.4628 0.2067 -5.2298 25 1 14.8816 2.2793 -4.1131 26 6 5.9046 2.6767 -1.8358 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0701 1.5874 2.1492 33 1 1.9991 3.1540 1.3076 34 1 0.5491 2.1252 1.3970 35 1 3.8571 0.8799 -1.0113 36 1 4.0030 0.9835 0.7596 37 1 3.7314 3.3879 0.5323 38 1 5.7220 4.3723 1.1592 39 1 5.6053 5.0168 -0.4957 40 1 7.9195 5.2101 0.3988 41 1 7.9697 3.4450 0.6258 42 1 7.6311 4.9330 -2.0192 43 1 9.0571 3.9998 -1.4969 44 1 9.8113 2.9861 -3.2463 45 1 10.0388 2.1997 -1.6657 46 1 13.2955 -1.4480 -4.9534 47 1 5.6268 1.6743 -2.1616 48 1 5.3932 3.4161 -2.4521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207409028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:29 Heat of formation + Delta-G solvation = -80.393756 kcal Electronic energy + Delta-G solvation = -24118.603467 eV Core-core repulsion = 20718.671704 eV Total energy + Delta-G solvation = -3399.931763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25557 -39.24437 -37.93838 -35.59367 -34.59449 -33.30011 -31.94266 -30.71492 -29.15882 -27.71607 -27.04497 -26.18578 -24.16331 -22.79838 -21.98800 -20.79960 -20.31007 -19.49586 -18.23069 -17.24338 -16.89441 -16.82294 -16.63411 -16.22282 -15.88656 -15.68364 -15.54497 -15.06333 -14.71776 -14.57103 -14.34680 -14.28685 -14.08196 -13.87703 -13.52028 -13.45785 -13.16997 -12.91695 -12.89511 -12.76908 -12.63974 -12.59374 -12.16616 -12.04252 -11.96197 -11.72479 -11.67144 -11.51560 -11.39494 -11.24834 -11.15040 -10.90416 -10.27575 -9.79954 -9.43074 -8.69305 -8.35263 -6.14288 1.23824 1.42338 1.44732 1.53662 1.56036 2.05359 2.26502 2.98792 3.09118 3.23899 3.59480 3.83000 3.86214 3.94094 3.95960 4.01622 4.07008 4.17308 4.23647 4.28497 4.39438 4.41614 4.52878 4.58596 4.60763 4.65822 4.72260 4.77171 4.80523 4.85061 4.94559 4.97977 5.05060 5.10061 5.13463 5.14860 5.18988 5.21626 5.34004 5.40860 5.48083 5.51805 5.54317 5.98582 6.19023 6.27863 6.47232 7.05593 7.11270 8.74105 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.021669 B = 0.002488 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.834152 B =11250.369364 C =12252.042127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.084 4.084 4 H 0.074 0.926 5 C -0.146 4.146 6 C 0.063 3.937 7 N -0.678 5.678 8 C 0.082 3.918 9 H 0.028 0.972 10 C -0.112 4.112 11 C -0.127 4.127 12 C 0.095 3.905 13 N -0.606 5.606 14 C 0.530 3.470 15 O -0.570 6.570 16 C -0.121 4.121 17 S -0.156 6.156 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.256 1.256 26 C 0.126 3.874 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.026 0.974 37 H 0.355 0.645 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.055 0.945 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.007 14.185 14.902 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.102 4.102 4 H 0.093 0.907 5 C -0.203 4.203 6 C -0.066 4.066 7 N -0.312 5.312 8 C -0.029 4.029 9 H 0.046 0.954 10 C -0.150 4.150 11 C -0.166 4.166 12 C -0.026 4.026 13 N -0.340 5.340 14 C 0.318 3.682 15 O -0.448 6.448 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.180 1.180 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.176 0.824 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.851 12.600 13.525 27.866 hybrid contribution 1.920 0.343 0.929 2.160 sum -18.931 12.944 14.454 27.108 Atomic orbital electron populations 1.21781 0.94734 1.01867 1.02259 1.21557 0.96892 0.96040 1.01585 1.21105 0.93188 0.96441 0.99505 0.90713 1.21874 1.02101 1.00437 0.95912 1.22050 0.95861 0.89394 0.99328 1.60309 1.09007 1.11632 1.50217 1.21714 0.88220 0.98446 0.94532 0.95396 1.21683 0.95397 0.95457 1.02470 1.21901 0.95916 1.03908 0.94879 1.22126 0.99223 0.85604 0.95677 1.48101 1.07692 1.19617 1.58636 1.20210 0.88549 0.82506 0.76930 1.90670 1.74608 1.30027 1.49544 1.23353 0.94289 1.04097 1.05432 1.85633 1.05632 1.24772 1.76810 1.23186 0.92095 1.08316 1.45584 0.89774 1.26168 1.05038 0.94331 0.93758 1.70192 1.36358 1.10835 1.37477 0.84927 0.75678 0.79088 0.78125 1.19259 1.20337 1.18016 1.21485 0.78788 1.02063 0.97377 0.92718 0.92644 0.91680 0.93031 0.92151 0.93031 0.91826 0.91476 0.93154 0.95601 0.82392 0.89786 0.89550 0.87207 0.92592 0.88932 0.89221 0.87319 0.87417 0.91996 0.92619 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.15 16 2 C -0.12 -1.86 5.40 30.59 0.17 -1.69 16 3 C -0.08 -1.24 2.60 -10.80 -0.03 -1.27 16 4 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 5 C -0.15 -1.61 8.72 71.98 0.63 -0.99 16 6 C 0.06 1.19 4.94 86.30 0.43 1.62 16 7 N -0.68 -11.50 6.31 -491.16 -3.10 -14.60 16 8 C 0.08 1.62 2.64 44.99 0.12 1.74 16 9 H 0.03 0.68 7.80 -2.39 -0.02 0.66 16 10 C -0.11 -1.49 5.17 30.62 0.16 -1.33 16 11 C -0.13 -1.82 6.08 30.67 0.19 -1.64 16 12 C 0.10 1.85 6.34 86.36 0.55 2.40 16 13 N -0.61 -17.50 2.97 -818.88 -2.43 -19.93 16 14 C 0.53 21.22 7.72 87.66 0.68 21.89 16 15 O -0.57 -28.29 15.27 -3.04 -0.05 -28.34 16 16 C -0.12 -4.98 4.50 71.24 0.32 -4.66 16 17 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 18 C -0.54 -31.34 9.50 67.95 0.65 -30.69 16 19 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 22 Si 1.00 43.74 29.55 68.60 2.03 45.76 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 C 0.13 3.35 5.90 86.36 0.51 3.86 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.68 6.57 -2.39 -0.02 0.66 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.60 6.68 -2.39 -0.02 0.59 16 34 H 0.07 0.65 6.57 -2.38 -0.02 0.63 16 35 H 0.05 1.21 7.57 -2.39 -0.02 1.19 16 36 H 0.03 0.51 8.06 -2.39 -0.02 0.49 16 37 H 0.35 4.47 6.58 -89.69 -0.59 3.88 16 38 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 1.78 5.93 -2.39 -0.01 1.76 16 44 H 0.11 4.04 7.94 -2.39 -0.02 4.02 16 45 H 0.11 4.01 7.69 -2.39 -0.02 3.99 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.06 1.87 6.49 -2.39 -0.02 1.86 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -76.20 385.55 1.42 -74.78 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.33 Total: 19.53 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 5.52 Total: -10.78 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -5.25 Total: -90.92 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -76.20 1.42 -74.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207409028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.616 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds