Wall clock time and date at job start Tue Mar 31 2020 11:02:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52996 * 109.47061 * 2 1
4 4 C 1.52999 * 109.47443 * 120.00183 * 2 1 3
5 5 C 1.52999 * 109.47214 * 64.99651 * 4 2 1
6 6 N 1.46903 * 109.47245 * 180.02562 * 5 4 2
7 7 C 1.46897 * 111.00077 * 180.02562 * 6 5 4
8 8 H 1.08997 * 109.49593 * 324.93418 * 7 6 5
9 9 C 1.53041 * 109.52180 * 204.85077 * 7 6 5
10 10 C 1.53039 * 109.53647 * 178.66614 * 9 7 6
11 11 C 1.52758 * 109.38439 * 61.24252 * 10 9 7
12 12 N 1.46927 * 109.00682 * 305.58958 * 11 10 9
13 13 C 1.34784 * 120.62995 * 233.58186 * 12 11 10
14 14 O 1.21279 * 119.99925 * 179.71847 * 13 12 11
15 15 C 1.50700 * 119.99961 * 359.72079 * 13 12 11
16 16 S 1.80996 * 109.47240 * 179.97438 * 15 13 12
17 17 C 1.76200 * 100.00090 * 179.97438 * 16 15 13
18 18 H 1.07999 * 120.00086 * 0.02562 * 17 16 15
19 19 C 1.38796 * 120.00048 * 179.97438 * 17 16 15
20 20 N 1.31626 * 119.99898 * 0.02562 * 19 17 16
21 21 Si 1.86804 * 119.99937 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.46830 * 60.00444 * 21 19 17
23 23 H 1.48499 * 109.46800 * 179.97438 * 21 19 17
24 24 H 1.48500 * 109.47147 * 300.00239 * 21 19 17
25 25 C 1.46923 * 118.73985 * 53.30967 * 12 11 10
26 26 H 1.08995 * 109.46856 * 299.99566 * 1 2 3
27 27 H 1.08998 * 109.47502 * 60.00527 * 1 2 3
28 28 H 1.09007 * 109.47081 * 180.02562 * 1 2 3
29 29 H 1.09006 * 109.47023 * 239.99730 * 2 1 3
30 30 H 1.09005 * 109.46863 * 180.02562 * 3 2 1
31 31 H 1.09006 * 109.46842 * 299.99946 * 3 2 1
32 32 H 1.08997 * 109.47274 * 59.99793 * 3 2 1
33 33 H 1.09002 * 109.46741 * 304.99881 * 4 2 1
34 34 H 1.08997 * 109.47600 * 185.00264 * 4 2 1
35 35 H 1.09002 * 109.47079 * 60.00436 * 5 4 2
36 36 H 1.08997 * 109.47433 * 299.99993 * 5 4 2
37 37 H 1.00899 * 111.00073 * 56.04548 * 6 5 4
38 38 H 1.09000 * 109.46215 * 298.68401 * 9 7 6
39 39 H 1.08998 * 109.46247 * 58.66183 * 9 7 6
40 40 H 1.08998 * 109.49687 * 181.31562 * 10 9 7
41 41 H 1.09003 * 109.49942 * 301.38469 * 10 9 7
42 42 H 1.09003 * 109.51509 * 185.70345 * 11 10 9
43 43 H 1.09007 * 109.43462 * 65.42304 * 11 10 9
44 44 H 1.09004 * 109.46932 * 300.00223 * 15 13 12
45 45 H 1.08997 * 109.47392 * 59.99562 * 15 13 12
46 46 H 0.97005 * 120.00078 * 180.02562 * 20 19 17
47 47 H 1.08998 * 109.59009 * 66.42846 * 25 12 11
48 48 H 1.09006 * 109.58796 * 186.85605 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 1.6353 -2.1955 1.1879
6 7 2.1245 -2.8879 2.3876
7 6 1.7541 -4.3092 2.3631
8 1 0.7763 -4.4222 1.8948
9 6 1.7005 -4.8485 3.7943
10 6 1.2822 -6.3205 3.7712
11 6 2.3150 -7.1288 2.9878
12 7 2.4839 -6.5281 1.6577
13 6 2.3482 -7.2756 0.5443
14 8 2.4851 -6.7669 -0.5480
15 6 2.0262 -8.7435 0.6570
16 16 1.9085 -9.4642 -0.9991
17 6 1.5360 -11.1347 -0.5801
18 1 1.4483 -11.4247 0.4565
19 6 1.3543 -12.0775 -1.5823
20 7 1.4606 -11.7239 -2.8457
21 14 0.9586 -13.8484 -1.1381
22 1 -0.3105 -13.8938 -0.3683
23 1 0.8127 -14.6494 -2.3800
24 1 2.0585 -14.4093 -0.3130
25 6 2.7978 -5.0959 1.5640
26 1 -0.3633 0.5137 0.8900
27 1 -0.3634 0.5137 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 1.8934 -0.5139 -0.8900
30 1 3.1300 1.4424 -0.0005
31 1 1.6766 1.9563 -0.8901
32 1 1.6766 1.9563 0.8899
33 1 1.6055 -0.2617 2.1369
34 1 3.1264 -0.6443 1.2951
35 1 2.0699 -2.6550 0.3002
36 1 0.5490 -2.2724 1.1421
37 1 1.7868 -2.4403 3.2265
38 1 2.6849 -4.7579 4.2536
39 1 0.9760 -4.2744 4.3719
40 1 1.2216 -6.6975 4.7921
41 1 0.3086 -6.4145 3.2901
42 1 1.9692 -8.1572 2.8832
43 1 3.2666 -7.1134 3.5193
44 1 2.8144 -9.2464 1.2174
45 1 1.0756 -8.8683 1.1755
46 1 1.3332 -12.3828 -3.5462
47 1 3.7895 -4.9112 1.9769
48 1 2.7704 -4.7833 0.5200
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207429192.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:02:14
Heat of formation + Delta-G solvation = -82.018882 kcal
Electronic energy + Delta-G solvation = -24022.802398 eV
Core-core repulsion = 20622.800164 eV
Total energy + Delta-G solvation = -3400.002234 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.25705 -39.13240 -37.88410 -35.89427 -34.59407 -33.40717 -31.98541 -30.52105
-28.23913 -28.01062 -27.66244 -26.24713 -24.12422 -22.72570 -22.02183 -20.80448
-20.33828 -19.49439 -18.22312 -17.21586 -16.88698 -16.74611 -16.58173 -16.20326
-16.11670 -15.68772 -15.49183 -15.08072 -14.66795 -14.57923 -14.40855 -14.26765
-14.06551 -13.82414 -13.53025 -13.44588 -13.17313 -13.07177 -12.86910 -12.71771
-12.63941 -12.53611 -12.19722 -12.02521 -11.96310 -11.73724 -11.64229 -11.56907
-11.48473 -11.28732 -11.13457 -10.90583 -10.27960 -9.79422 -9.42006 -8.69324
-8.34965 -6.14177 1.23686 1.43887 1.44632 1.53285 1.55072 2.05188
2.26810 2.98961 3.08374 3.23839 3.59502 3.84144 3.86527 3.93894
3.96806 4.01457 4.07420 4.18892 4.23488 4.26958 4.30598 4.41572
4.53047 4.57424 4.62413 4.68105 4.77010 4.79387 4.81626 4.85636
4.93801 4.97117 4.99072 5.04964 5.10376 5.12333 5.14683 5.32415
5.35963 5.40644 5.46453 5.48176 5.51073 5.98229 6.18899 6.27652
6.48077 7.05702 7.11006 8.74139
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.019113 B = 0.002508 C = 0.002297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1464.581900 B =11162.712547 C =12189.497934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.101 4.101
3 C -0.143 4.143
4 C -0.100 4.100
5 C 0.057 3.943
6 N -0.680 5.680
7 C 0.082 3.918
8 H 0.028 0.972
9 C -0.112 4.112
10 C -0.128 4.128
11 C 0.095 3.905
12 N -0.606 5.606
13 C 0.530 3.470
14 O -0.570 6.570
15 C -0.121 4.121
16 S -0.155 6.155
17 C -0.545 4.545
18 H 0.084 0.916
19 C 0.012 3.988
20 N -0.912 5.912
21 Si 1.000 3.000
22 H -0.261 1.261
23 H -0.279 1.279
24 H -0.261 1.261
25 C 0.126 3.874
26 H 0.062 0.938
27 H 0.055 0.945
28 H 0.045 0.955
29 H 0.057 0.943
30 H 0.055 0.945
31 H 0.055 0.945
32 H 0.061 0.939
33 H 0.074 0.926
34 H 0.067 0.933
35 H 0.048 0.952
36 H 0.030 0.970
37 H 0.356 0.644
38 H 0.086 0.914
39 H 0.084 0.916
40 H 0.110 0.890
41 H 0.055 0.945
42 H 0.089 0.911
43 H 0.092 0.908
44 H 0.109 0.891
45 H 0.108 0.892
46 H 0.271 0.729
47 H 0.082 0.918
48 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.768 21.199 18.703 28.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.120 4.120
3 C -0.200 4.200
4 C -0.138 4.138
5 C -0.072 4.072
6 N -0.313 5.313
7 C -0.029 4.029
8 H 0.046 0.954
9 C -0.150 4.150
10 C -0.167 4.167
11 C -0.026 4.026
12 N -0.341 5.341
13 C 0.318 3.682
14 O -0.448 6.448
15 C -0.272 4.272
16 S 0.072 5.928
17 C -0.693 4.693
18 H 0.102 0.898
19 C -0.193 4.193
20 N -0.548 5.548
21 Si 0.821 3.179
22 H -0.185 1.185
23 H -0.204 1.204
24 H -0.185 1.185
25 C 0.002 3.998
26 H 0.081 0.919
27 H 0.074 0.926
28 H 0.065 0.935
29 H 0.075 0.925
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.080 0.920
33 H 0.092 0.908
34 H 0.086 0.914
35 H 0.066 0.934
36 H 0.048 0.952
37 H 0.176 0.824
38 H 0.104 0.896
39 H 0.103 0.897
40 H 0.128 0.872
41 H 0.074 0.926
42 H 0.108 0.892
43 H 0.110 0.890
44 H 0.127 0.873
45 H 0.126 0.874
46 H 0.080 0.920
47 H 0.100 0.900
48 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 0.059 21.815 16.683 27.464
hybrid contribution -1.287 -1.579 0.722 2.161
sum -1.228 20.237 17.405 26.720
Atomic orbital electron populations
1.21890 0.95146 1.01367 1.02159 1.21111 0.96039 0.96866 0.97950
1.21795 1.01034 0.95041 1.02144 1.21519 1.01460 0.92720 0.98132
1.22066 0.97093 0.95025 0.92983 1.60249 1.64429 1.01107 1.05495
1.21709 0.95213 0.88515 0.97422 0.95407 1.21679 1.03674 0.95785
0.93825 1.21832 0.97964 0.95025 1.01840 1.22034 1.01225 0.98135
0.81238 1.48105 1.70120 1.09500 1.06339 1.20210 0.75787 0.88222
0.83965 1.90669 1.51706 1.73989 1.28477 1.23351 1.05831 0.94651
1.03348 1.85630 1.92903 1.08269 1.06017 1.23155 1.55895 0.94076
0.96162 0.89767 1.26166 0.94240 1.04701 0.94159 1.70187 1.47461
1.36775 1.00425 0.84984 0.79391 0.75609 0.77889 1.18547 1.20446
1.18522 1.21496 0.99090 0.78557 1.00610 0.91866 0.92610 0.93546
0.92461 0.92588 0.92555 0.91952 0.90768 0.91427 0.93357 0.95150
0.82403 0.89566 0.89712 0.87160 0.92615 0.89234 0.88957 0.87302
0.87424 0.91990 0.89979 0.92638
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.12 8.95 71.98 0.64 -1.48 16
2 C -0.10 -1.49 2.92 -10.79 -0.03 -1.53 16
3 C -0.14 -1.74 9.19 71.98 0.66 -1.08 16
4 C -0.10 -1.46 4.94 30.59 0.15 -1.31 16
5 C 0.06 1.07 5.24 86.30 0.45 1.52 16
6 N -0.68 -11.43 6.31 -491.17 -3.10 -14.53 16
7 C 0.08 1.63 2.64 44.99 0.12 1.75 16
8 H 0.03 0.67 7.80 -2.39 -0.02 0.66 16
9 C -0.11 -1.47 5.17 30.62 0.16 -1.32 16
10 C -0.13 -1.83 6.06 30.53 0.19 -1.64 16
11 C 0.10 1.85 6.31 86.22 0.54 2.39 16
12 N -0.61 -17.53 2.98 -819.72 -2.44 -19.97 16
13 C 0.53 21.24 7.72 87.66 0.68 21.92 16
14 O -0.57 -28.31 15.27 -3.03 -0.05 -28.36 16
15 C -0.12 -4.99 4.50 71.24 0.32 -4.67 16
16 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16
17 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16
18 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16
19 C 0.01 0.69 5.49 84.86 0.47 1.15 16
20 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16
21 Si 1.00 43.69 29.55 68.60 2.03 45.72 16
22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
25 C 0.13 3.34 5.90 86.36 0.51 3.85 16
26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.05 0.76 6.56 -2.38 -0.02 0.74 16
29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16
30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16
31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16
32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
33 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16
34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
35 H 0.05 1.16 7.56 -2.39 -0.02 1.14 16
36 H 0.03 0.58 6.48 -2.39 -0.02 0.57 16
37 H 0.36 4.32 8.34 -89.69 -0.75 3.57 16
38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16
39 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16
40 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16
41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
42 H 0.09 1.78 5.94 -2.39 -0.01 1.76 16
43 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16
44 H 0.11 4.05 7.95 -2.39 -0.02 4.03 16
45 H 0.11 4.01 7.68 -2.40 -0.02 3.99 16
46 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16
47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
48 H 0.06 1.87 6.48 -2.38 -0.02 1.85 16
Total: -1.00 -76.28 388.63 1.24 -75.04
By element:
Atomic # 1 Polarization: 19.53 SS G_CDS: 0.17 Total: 19.70 kcal
Atomic # 6 Polarization: -16.70 SS G_CDS: 5.50 Total: -11.19 kcal
Atomic # 7 Polarization: -85.64 SS G_CDS: -5.25 Total: -90.89 kcal
Atomic # 8 Polarization: -28.31 SS G_CDS: -0.05 Total: -28.36 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal
Total: -76.28 1.24 -75.04 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207429192.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.980 kcal
(2) G-P(sol) polarization free energy of solvation -76.279 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.259 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.039 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.019 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds