Wall clock time and date at job start Tue Mar 31 2020 11:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.46848 * 110.99958 * 294.20187 * 5 4 3 7 7 C 1.53034 * 109.52086 * 174.16220 * 6 5 4 8 8 C 1.53116 * 109.27766 * 59.18490 * 7 6 5 9 9 C 1.53007 * 109.57210 * 182.40558 * 8 7 6 10 10 N 1.46500 * 109.46987 * 294.71375 * 9 8 7 11 11 C 1.34783 * 119.99663 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99898 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99654 * 179.97438 * 11 10 9 14 14 S 1.81001 * 109.46903 * 179.97438 * 13 11 10 15 15 C 1.76195 * 99.99959 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00324 * 359.97438 * 15 14 13 17 17 C 1.38805 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31633 * 119.99731 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00023 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47315 * 89.99957 * 19 17 15 21 21 H 1.48501 * 109.47223 * 209.99932 * 19 17 15 22 22 H 1.48501 * 109.47014 * 330.00408 * 19 17 15 23 23 C 1.53110 * 109.16138 * 302.34128 * 8 7 6 24 24 C 1.46852 * 110.99971 * 169.99744 * 5 4 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 31 31 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 32 32 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 33 33 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 34 34 H 1.09004 * 109.46425 * 294.18123 * 6 5 4 35 35 H 1.09002 * 109.45789 * 54.14490 * 6 5 4 36 36 H 1.08996 * 109.50601 * 299.24170 * 7 6 5 37 37 H 1.09006 * 109.50179 * 179.12409 * 7 6 5 38 38 H 1.08996 * 109.52466 * 62.24942 * 8 7 6 39 39 H 1.08992 * 109.47295 * 54.71378 * 9 8 7 40 40 H 1.09007 * 109.46806 * 174.71224 * 9 8 7 41 41 H 0.96994 * 120.00420 * 359.97438 * 10 9 8 42 42 H 1.09001 * 109.47188 * 299.99925 * 13 11 10 43 43 H 1.09001 * 109.47073 * 59.99731 * 13 11 10 44 44 H 0.97003 * 119.99391 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.50668 * 297.71376 * 23 8 7 46 46 H 1.08999 * 109.50680 * 177.60089 * 23 8 7 47 47 H 1.08999 * 109.46052 * 305.85601 * 24 5 4 48 48 H 1.09001 * 109.46352 * 65.82479 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7046 3.5117 -1.2499 7 6 4.1003 4.9870 -1.1555 8 6 5.6073 5.0911 -0.9051 9 6 6.0007 6.5616 -0.7498 10 7 5.7759 7.2635 -2.0159 11 6 6.0546 8.5784 -2.1161 12 8 6.4910 9.1805 -1.1580 13 6 5.8240 9.3003 -3.4187 14 16 6.2892 11.0398 -3.2349 15 6 5.9278 11.6262 -4.8566 16 1 5.5394 10.9480 -5.6020 17 6 6.1431 12.9596 -5.1766 18 7 5.8735 13.3975 -6.3883 19 14 6.8154 14.1325 -3.8876 20 1 8.2992 14.1362 -3.9474 21 1 6.3060 15.5023 -4.1510 22 1 6.3756 13.6915 -2.5395 23 6 5.9576 4.3297 0.3762 24 6 5.5081 2.8735 0.2375 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.9337 0.9286 0.8892 33 1 3.9330 0.9287 -0.8908 34 1 4.2335 3.0463 -2.0817 35 1 2.6299 3.4337 -1.4140 36 1 3.5614 5.4564 -0.3326 37 1 3.8509 5.4911 -2.0892 38 1 6.1472 4.6565 -1.7463 39 1 5.3945 7.0192 0.0319 40 1 7.0544 6.6291 -0.4789 41 1 5.4272 6.7819 -2.7822 42 1 6.4302 8.8423 -4.2002 43 1 4.7704 9.2330 -3.6897 44 1 6.0244 14.3292 -6.6119 45 1 5.4479 4.7887 1.2233 46 1 7.0351 4.3642 0.5370 47 1 5.7432 2.3319 1.1538 48 1 6.0285 2.4111 -0.6012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:38 Heat of formation + Delta-G solvation = -66.204692 kcal Electronic energy + Delta-G solvation = -23377.526067 eV Core-core repulsion = 19978.209588 eV Total energy + Delta-G solvation = -3399.316479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93473 -38.97059 -36.49206 -34.82929 -32.90701 -32.42741 -31.21517 -30.03867 -28.84907 -26.33866 -25.57453 -23.83806 -23.29159 -21.90853 -21.12561 -20.50868 -19.90838 -17.87176 -16.57027 -16.18875 -16.13593 -15.91229 -15.38379 -15.23383 -14.94887 -14.78383 -14.44549 -14.08437 -13.89019 -13.61276 -13.48970 -13.33361 -12.88313 -12.86776 -12.78056 -12.60402 -12.38689 -11.88916 -11.68419 -11.53827 -11.49775 -11.33301 -11.25598 -11.03671 -10.99818 -10.92311 -10.79581 -10.55925 -10.46203 -9.84504 -9.49112 -9.00346 -8.91840 -8.68491 -8.48654 -6.90512 -6.28115 -3.99606 2.79174 3.01387 3.32685 3.36262 3.46649 3.51775 3.68700 4.33733 4.34385 4.38744 4.43359 4.54432 4.60619 4.70964 4.75843 4.84513 4.91847 4.97647 5.02676 5.10999 5.16040 5.20451 5.22610 5.25956 5.31257 5.37391 5.42879 5.44573 5.50379 5.53668 5.57287 5.64931 5.72242 5.77252 5.80499 5.83559 5.85583 5.90929 5.93602 6.02774 6.12900 6.57212 6.72974 6.73886 7.64478 7.94992 8.42408 8.52848 9.18187 10.81093 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.001967 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.940370 B =14235.048556 C =14911.745558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.118 4.118 4 C 0.055 3.945 5 N -0.539 5.539 6 C 0.053 3.947 7 C -0.113 4.113 8 C -0.100 4.100 9 C 0.128 3.872 10 N -0.736 5.736 11 C 0.530 3.470 12 O -0.520 6.520 13 C -0.124 4.124 14 S -0.142 6.142 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.109 4.109 24 C 0.058 3.942 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.270 0.730 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 -28.753 12.669 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.073 4.073 5 N -0.264 5.264 6 C -0.074 4.074 7 C -0.151 4.151 8 C -0.119 4.119 9 C 0.003 3.997 10 N -0.391 5.391 11 C 0.315 3.685 12 O -0.395 6.395 13 C -0.275 4.275 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.147 4.147 24 C -0.070 4.070 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.232 0.768 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.588 -27.340 14.532 31.462 hybrid contribution 0.012 -0.743 -1.959 2.095 sum -5.576 -28.083 12.573 31.270 Atomic orbital electron populations 1.21760 0.95670 1.01575 1.01980 1.21493 0.96079 0.96739 1.01872 1.21646 0.94427 0.96611 1.02877 1.22121 0.95722 0.88765 1.00647 1.61940 1.13796 1.15332 1.35286 1.22150 1.00969 0.94510 0.89801 1.21670 0.95246 0.95497 1.02664 1.21447 0.96752 0.94754 0.98914 1.21314 1.01284 0.90477 0.86575 1.45981 1.68789 1.09812 1.14485 1.20268 0.76871 0.81389 0.89932 1.90698 1.43388 1.66182 1.39242 1.23280 1.05517 1.01419 0.97265 1.84788 1.86351 1.00607 1.19833 1.22325 1.50571 0.98787 0.95231 0.89406 1.24717 0.93923 0.97315 0.95369 1.69944 1.46523 1.16463 1.18788 0.86729 0.80417 0.80842 0.83832 1.19222 1.19944 1.15911 1.21553 1.01030 0.94395 0.97729 1.22061 0.87277 0.97112 1.00558 0.92819 0.92627 0.92721 0.92244 0.92032 0.91871 0.91033 0.90892 0.95062 0.95000 0.90376 0.90619 0.91246 0.90835 0.91447 0.91641 0.76800 0.88582 0.88505 0.91961 0.90546 0.91066 0.90679 0.94968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.70 5.14 -26.73 -0.14 -0.84 16 4 C 0.06 0.35 4.96 -3.82 -0.02 0.33 16 5 N -0.54 -4.05 4.66 -234.66 -1.09 -5.14 16 6 C 0.05 0.40 5.29 -3.83 -0.02 0.38 16 7 C -0.11 -0.90 5.23 -26.65 -0.14 -1.04 16 8 C -0.10 -0.81 2.29 -90.50 -0.21 -1.01 16 9 C 0.13 1.41 5.07 -4.04 -0.02 1.39 16 10 N -0.74 -9.33 5.31 -60.29 -0.32 -9.65 16 11 C 0.53 9.48 7.85 -10.98 -0.09 9.39 16 12 O -0.52 -11.40 15.86 5.56 0.09 -11.31 16 13 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 14 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 15 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 16 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 19 Si 0.86 21.92 27.74 -169.99 -4.71 17.21 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 23 C -0.11 -0.80 5.38 -26.66 -0.14 -0.95 16 24 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 25 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.44 7.99 -51.93 -0.41 0.02 16 33 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.56 6.21 -51.93 -0.32 0.24 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.53 7.28 -51.93 -0.38 0.15 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.40 3.95 7.69 -40.82 -0.31 3.63 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.10 1.75 8.14 -51.91 -0.42 1.32 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.47 8.01 -51.93 -0.42 0.06 16 48 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -33.35 389.59 -10.48 -43.82 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.94 Total: -1.84 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.15 Total: -7.44 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.64 Total: -40.68 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.35 -10.48 -43.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.380 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds