Wall clock time and date at job start Tue Mar 31 2020 11:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.46848 * 110.99958 * 294.20187 * 5 4 3 7 7 C 1.53034 * 109.52086 * 174.16220 * 6 5 4 8 8 C 1.53116 * 109.27766 * 59.18490 * 7 6 5 9 9 C 1.53007 * 109.57210 * 182.40558 * 8 7 6 10 10 N 1.46500 * 109.46987 * 294.71375 * 9 8 7 11 11 C 1.34783 * 119.99663 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99898 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99654 * 179.97438 * 11 10 9 14 14 S 1.81001 * 109.46903 * 179.97438 * 13 11 10 15 15 C 1.76195 * 99.99959 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00324 * 359.97438 * 15 14 13 17 17 C 1.38805 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31633 * 119.99731 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00023 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47315 * 89.99957 * 19 17 15 21 21 H 1.48501 * 109.47223 * 209.99932 * 19 17 15 22 22 H 1.48501 * 109.47014 * 330.00408 * 19 17 15 23 23 C 1.53110 * 109.16138 * 302.34128 * 8 7 6 24 24 C 1.46852 * 110.99971 * 169.99744 * 5 4 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 31 31 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 32 32 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 33 33 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 34 34 H 1.09004 * 109.46425 * 294.18123 * 6 5 4 35 35 H 1.09002 * 109.45789 * 54.14490 * 6 5 4 36 36 H 1.08996 * 109.50601 * 299.24170 * 7 6 5 37 37 H 1.09006 * 109.50179 * 179.12409 * 7 6 5 38 38 H 1.08996 * 109.52466 * 62.24942 * 8 7 6 39 39 H 1.08992 * 109.47295 * 54.71378 * 9 8 7 40 40 H 1.09007 * 109.46806 * 174.71224 * 9 8 7 41 41 H 0.96994 * 120.00420 * 359.97438 * 10 9 8 42 42 H 1.09001 * 109.47188 * 299.99925 * 13 11 10 43 43 H 1.09001 * 109.47073 * 59.99731 * 13 11 10 44 44 H 0.97003 * 119.99391 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.50668 * 297.71376 * 23 8 7 46 46 H 1.08999 * 109.50680 * 177.60089 * 23 8 7 47 47 H 1.08999 * 109.46052 * 305.85601 * 24 5 4 48 48 H 1.09001 * 109.46352 * 65.82479 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7046 3.5117 -1.2499 7 6 4.1003 4.9870 -1.1555 8 6 5.6073 5.0911 -0.9051 9 6 6.0007 6.5616 -0.7498 10 7 5.7759 7.2635 -2.0159 11 6 6.0546 8.5784 -2.1161 12 8 6.4910 9.1805 -1.1580 13 6 5.8240 9.3003 -3.4187 14 16 6.2892 11.0398 -3.2349 15 6 5.9278 11.6262 -4.8566 16 1 5.5394 10.9480 -5.6020 17 6 6.1431 12.9596 -5.1766 18 7 5.8735 13.3975 -6.3883 19 14 6.8154 14.1325 -3.8876 20 1 8.2992 14.1362 -3.9474 21 1 6.3060 15.5023 -4.1510 22 1 6.3756 13.6915 -2.5395 23 6 5.9576 4.3297 0.3762 24 6 5.5081 2.8735 0.2375 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.9337 0.9286 0.8892 33 1 3.9330 0.9287 -0.8908 34 1 4.2335 3.0463 -2.0817 35 1 2.6299 3.4337 -1.4140 36 1 3.5614 5.4564 -0.3326 37 1 3.8509 5.4911 -2.0892 38 1 6.1472 4.6565 -1.7463 39 1 5.3945 7.0192 0.0319 40 1 7.0544 6.6291 -0.4789 41 1 5.4272 6.7819 -2.7822 42 1 6.4302 8.8423 -4.2002 43 1 4.7704 9.2330 -3.6897 44 1 6.0244 14.3292 -6.6119 45 1 5.4479 4.7887 1.2233 46 1 7.0351 4.3642 0.5370 47 1 5.7432 2.3319 1.1538 48 1 6.0285 2.4111 -0.6012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222425708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:37 Heat of formation + Delta-G solvation = -87.984746 kcal Electronic energy + Delta-G solvation = -23378.470521 eV Core-core repulsion = 19978.209588 eV Total energy + Delta-G solvation = -3400.260933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89711 -40.00203 -37.21656 -35.63361 -34.67147 -33.78630 -31.81581 -31.25328 -29.65052 -27.88608 -27.08573 -24.45948 -23.90374 -22.53187 -21.82455 -21.56835 -20.65562 -19.85984 -17.89791 -17.34296 -17.05890 -16.90265 -16.63400 -16.50513 -15.80968 -15.70775 -15.38422 -15.30248 -14.96523 -14.76162 -14.46727 -14.28500 -14.11971 -13.80314 -13.56428 -13.35087 -13.28962 -13.09534 -13.00471 -12.91741 -12.65508 -12.18543 -12.13570 -11.98709 -11.88120 -11.81941 -11.63119 -11.46929 -11.39449 -11.17026 -11.06694 -10.95543 -10.53477 -10.12023 -9.23271 -8.99612 -8.51549 -6.22324 0.99396 1.31497 1.47225 1.56473 1.57413 2.23414 2.27904 2.72436 2.86709 2.93906 3.66552 3.75941 3.81810 3.89226 4.03398 4.09825 4.22722 4.26091 4.30973 4.36434 4.39568 4.46854 4.46940 4.57591 4.60602 4.69354 4.72891 4.77594 4.86209 4.88177 4.92552 4.98494 5.00693 5.05883 5.11615 5.20903 5.24882 5.29797 5.38459 5.40873 5.48398 5.51740 5.70770 6.11395 6.18695 6.20259 6.47255 6.93715 7.20070 8.60763 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.001967 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.940370 B =14235.048556 C =14911.745558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.057 3.943 5 N -0.550 5.550 6 C 0.056 3.944 7 C -0.111 4.111 8 C -0.088 4.088 9 C 0.129 3.871 10 N -0.710 5.710 11 C 0.534 3.466 12 O -0.565 6.565 13 C -0.111 4.111 14 S -0.177 6.177 15 C -0.529 4.529 16 H 0.063 0.937 17 C 0.046 3.954 18 N -0.916 5.916 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.259 1.259 22 H -0.237 1.237 23 C -0.106 4.106 24 C 0.059 3.941 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.415 0.585 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.277 0.723 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 -30.444 13.397 33.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.151 4.151 4 C -0.071 4.071 5 N -0.275 5.275 6 C -0.071 4.071 7 C -0.149 4.149 8 C -0.107 4.107 9 C 0.005 3.995 10 N -0.364 5.364 11 C 0.319 3.681 12 O -0.443 6.443 13 C -0.262 4.262 14 S 0.050 5.950 15 C -0.677 4.677 16 H 0.081 0.919 17 C -0.160 4.160 18 N -0.554 5.554 19 Si 0.736 3.264 20 H -0.187 1.187 21 H -0.183 1.183 22 H -0.161 1.161 23 C -0.145 4.145 24 C -0.068 4.068 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.252 0.748 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.510 -29.086 15.239 33.295 hybrid contribution -0.075 -0.393 -2.195 2.231 sum -5.584 -29.479 13.044 32.717 Atomic orbital electron populations 1.21768 0.95646 1.01887 1.01767 1.21470 0.96080 0.96167 1.02184 1.21589 0.94278 0.97030 1.02166 1.22128 0.95783 0.88222 1.00919 1.61952 1.14197 1.16022 1.35361 1.22107 1.01132 0.93972 0.89935 1.21647 0.94863 0.96017 1.02373 1.21365 0.96949 0.92540 0.99805 1.21427 1.00871 0.91977 0.85199 1.45763 1.66742 1.08058 1.15847 1.19963 0.76816 0.82731 0.88570 1.90688 1.45882 1.67478 1.40291 1.23276 1.06762 0.97176 0.99018 1.84723 1.86814 1.05900 1.17608 1.22467 1.50073 0.98776 0.96389 0.91915 1.25564 0.94228 0.98956 0.97226 1.70019 1.47650 1.17311 1.20451 0.85865 0.79943 0.79363 0.81186 1.18696 1.18299 1.16135 1.21536 1.01505 0.94581 0.96854 1.22059 0.86999 0.96680 1.01089 0.92262 0.92842 0.92948 0.91970 0.91645 0.92279 0.91988 0.90423 0.94910 0.94687 0.90243 0.91875 0.90780 0.89775 0.92513 0.92127 0.74791 0.86839 0.86809 0.91373 0.91403 0.90242 0.89914 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.08 5.93 30.59 0.18 -0.89 16 3 C -0.11 -1.21 5.14 30.59 0.16 -1.06 16 4 C 0.06 0.63 4.96 86.30 0.43 1.06 16 5 N -0.55 -7.30 4.66 -896.34 -4.17 -11.48 16 6 C 0.06 0.73 5.29 86.32 0.46 1.18 16 7 C -0.11 -1.56 5.23 30.64 0.16 -1.40 16 8 C -0.09 -1.23 2.29 -10.72 -0.02 -1.25 16 9 C 0.13 2.64 5.07 86.38 0.44 3.08 16 10 N -0.71 -16.50 5.31 -463.04 -2.46 -18.96 16 11 C 0.53 18.33 7.85 87.66 0.69 19.02 16 12 O -0.56 -24.39 15.86 -3.02 -0.05 -24.43 16 13 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 14 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 15 C -0.53 -30.92 10.04 67.96 0.68 -30.24 16 16 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 17 C 0.05 2.69 5.50 84.86 0.47 3.16 16 18 N -0.92 -55.87 13.97 21.65 0.30 -55.57 16 19 Si 0.91 45.21 27.74 68.60 1.90 47.11 16 20 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 23 C -0.11 -1.37 5.38 30.64 0.16 -1.20 16 24 C 0.06 0.70 5.46 86.32 0.47 1.18 16 25 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.79 7.99 -2.39 -0.02 0.77 16 33 H 0.03 0.36 8.12 -2.39 -0.02 0.34 16 34 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.08 1.01 6.21 -2.39 -0.01 1.00 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 0.96 7.28 -2.38 -0.02 0.94 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.41 7.01 7.69 -92.71 -0.71 6.29 16 42 H 0.11 3.88 8.14 -2.39 -0.02 3.87 16 43 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 44 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.08 0.86 8.01 -2.39 -0.02 0.85 16 48 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -71.62 389.59 0.06 -71.56 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.16 Total: 13.57 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.42 Total: -11.77 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -6.33 Total: -86.00 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -71.62 0.06 -71.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.423 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds