Wall clock time and date at job start Tue Mar 31 2020 11:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47119 * 2 1 4 4 C 1.47198 * 109.47354 * 239.99996 * 2 1 3 5 5 N 2.60797 * 109.47243 * 240.00082 * 2 1 3 6 6 C 1.50702 * 109.46962 * 119.99893 * 2 1 3 7 7 C 1.38237 * 119.99667 * 179.97438 * 6 2 1 8 8 C 1.38238 * 119.99946 * 179.97438 * 7 6 2 9 9 C 1.38241 * 119.99590 * 0.02740 * 8 7 6 10 10 C 1.50701 * 119.99576 * 179.97438 * 9 8 7 11 11 O 1.42903 * 109.46878 * 89.99956 * 10 9 8 12 12 C 1.42899 * 113.99629 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.64352 * 333.13961 * 12 11 10 14 14 C 1.55161 * 110.72079 * 209.99944 * 12 11 10 15 15 C 1.54910 * 101.58330 * 206.13473 * 14 12 11 16 16 N 1.47422 * 104.83286 * 37.01059 * 15 14 12 17 17 C 1.36933 * 125.64960 * 155.91423 * 16 15 14 18 18 H 1.08004 * 119.99899 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99927 * 359.97438 * 17 16 15 20 20 N 1.31621 * 120.00019 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47175 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47264 * 120.00109 * 21 19 17 24 24 H 1.48500 * 109.47297 * 240.00031 * 21 19 17 25 25 C 1.47029 * 108.70190 * 335.86875 * 16 15 14 26 26 C 1.38233 * 120.00269 * 0.24973 * 9 8 7 27 27 C 1.38230 * 120.00212 * 359.97438 * 6 2 1 28 28 H 1.08998 * 109.47321 * 299.99849 * 1 2 3 29 29 H 1.08997 * 109.46822 * 59.99994 * 1 2 3 30 30 H 1.08997 * 109.46925 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47319 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47008 * 300.00455 * 3 2 1 33 33 H 1.08998 * 109.46901 * 59.99894 * 3 2 1 34 34 H 1.07998 * 120.00143 * 359.97438 * 7 6 2 35 35 H 1.07991 * 120.00062 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47060 * 210.00086 * 10 9 8 37 37 H 1.09001 * 109.47380 * 330.00174 * 10 9 8 38 38 H 1.08999 * 111.00670 * 324.21514 * 14 12 11 39 39 H 1.09005 * 111.00378 * 88.02100 * 14 12 11 40 40 H 1.08996 * 110.36467 * 155.85093 * 15 14 12 41 41 H 1.09002 * 110.36841 * 278.05897 * 15 14 12 42 42 H 0.96998 * 119.99780 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.88068 * 241.64004 * 25 16 15 44 44 H 1.09002 * 109.87799 * 120.47399 * 25 16 15 45 45 H 1.08003 * 119.99927 * 179.72604 * 26 9 8 46 46 H 1.07999 * 120.00163 * 359.97438 * 27 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0323 -0.7104 1.2305 7 6 3.3914 -0.8371 1.4490 8 6 3.8523 -1.4883 2.5779 9 6 2.9539 -2.0132 3.4881 10 6 3.4562 -2.7236 4.7186 11 8 3.6156 -1.7812 5.7810 12 6 4.0899 -2.3551 7.0006 13 1 3.8063 -3.4055 7.0669 14 6 3.5556 -1.5640 8.2238 15 6 4.6468 -1.8561 9.2839 16 7 5.9126 -1.8708 8.5284 17 6 7.1557 -1.6286 9.0491 18 1 8.0253 -1.6637 8.4095 19 6 7.2981 -1.3381 10.3990 20 7 6.2384 -1.2959 11.1785 21 14 8.9940 -1.0084 11.1095 22 1 10.0112 -1.1162 10.0330 23 1 9.0306 0.3582 11.6895 24 1 9.2883 -2.0045 12.1708 25 6 5.6193 -2.1897 7.1234 26 6 1.5948 -1.8915 3.2667 27 6 1.1341 -1.2353 2.1407 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 4.0932 -0.4274 0.7376 35 1 4.9140 -1.5870 2.7488 36 1 2.7381 -3.4879 5.0155 37 1 4.4163 -3.1919 4.5013 38 1 3.4988 -0.4977 8.0051 39 1 2.5866 -1.9472 8.5439 40 1 4.6639 -1.0688 10.0375 41 1 4.4712 -2.8246 9.7522 42 1 6.3380 -1.0925 12.1217 43 1 6.1164 -3.1181 6.8425 44 1 5.9570 -1.3767 6.4806 45 1 0.8930 -2.3055 3.9757 46 1 0.0723 -1.1359 1.9702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223156603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:45 Heat of formation + Delta-G solvation = 29.616157 kcal Electronic energy + Delta-G solvation = -24947.756781 eV Core-core repulsion = 21417.151454 eV Total energy + Delta-G solvation = -3530.605327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.34379 -38.50368 -37.49517 -35.94035 -35.05521 -32.29277 -31.34221 -30.94216 -29.14595 -27.91713 -27.17562 -26.04342 -24.32453 -23.72822 -22.57108 -21.19907 -20.21876 -20.11425 -18.04120 -16.99942 -16.80896 -16.29438 -15.78767 -15.33041 -14.74332 -14.73254 -14.47583 -14.31174 -14.01327 -13.83988 -13.66966 -13.50631 -13.28794 -13.00154 -12.70182 -12.51253 -12.45212 -12.39069 -12.07556 -11.85279 -11.78757 -11.68385 -11.41724 -11.16324 -11.07391 -10.98078 -10.88653 -10.79044 -10.27232 -10.08605 -9.78287 -9.55542 -9.14062 -9.08382 -8.90666 -8.65810 -6.83876 -5.65658 -3.07430 0.96400 1.22497 2.40824 2.42822 3.26381 3.40077 3.45419 3.48075 3.63642 4.10144 4.19098 4.31791 4.45679 4.50466 4.71664 4.78920 4.88668 5.08446 5.16809 5.18589 5.23825 5.28439 5.32214 5.35175 5.43074 5.47117 5.51354 5.56767 5.60427 5.71035 5.73390 5.75112 5.85475 5.88528 6.19235 6.26006 6.33970 6.47247 6.53424 6.59230 6.64745 6.72505 6.74949 7.19432 7.48936 7.61613 7.63059 7.85097 8.35502 9.21626 9.82350 10.46684 11.38581 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.002208 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.337892 B =12677.263133 C =13071.149166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 C -0.140 4.140 4 C 0.218 3.782 5 N -0.431 5.431 6 C -0.086 4.086 7 C -0.110 4.110 8 C -0.094 4.094 9 C -0.074 4.074 10 C 0.098 3.902 11 O -0.370 6.370 12 C 0.075 3.925 13 H 0.064 0.936 14 C -0.138 4.138 15 C 0.152 3.848 16 N -0.602 5.602 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.118 3.882 26 C -0.097 4.097 27 C -0.112 4.112 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.013 0.987 42 H 0.252 0.748 43 H 0.020 0.980 44 H 0.034 0.966 45 H 0.127 0.873 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 2.013 -19.891 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.076 3.924 3 C -0.198 4.198 4 C -0.100 4.100 5 N -0.105 5.105 6 C -0.087 4.087 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.074 4.074 10 C 0.021 3.979 11 O -0.289 6.289 12 C 0.017 3.983 13 H 0.082 0.918 14 C -0.177 4.177 15 C 0.027 3.973 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.008 4.008 26 C -0.115 4.115 27 C -0.129 4.129 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.031 0.969 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.052 0.948 45 H 0.145 0.855 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.603 1.435 -21.146 25.185 hybrid contribution 0.910 -0.065 0.752 1.182 sum -12.693 1.370 -20.394 24.061 Atomic orbital electron populations 1.22003 0.90950 1.03528 1.03849 1.17095 0.96775 0.94264 0.84285 1.21942 1.02303 0.91829 1.03747 1.28992 0.93449 0.93560 0.94045 1.81220 1.08617 1.09026 1.11668 1.19390 0.93831 1.00338 0.95113 1.20952 0.94683 0.99352 0.97794 1.21090 1.00023 0.96575 0.93511 1.19773 0.93604 0.98846 0.95199 1.21333 0.99659 0.91073 0.85827 1.88009 1.86628 1.34179 1.20080 1.23277 0.94869 0.96466 0.83675 0.91839 1.23165 0.99305 1.00255 0.94968 1.21954 0.81481 1.01084 0.92762 1.44399 1.03720 1.82353 1.02475 1.19135 0.83552 1.39814 0.92359 0.90404 1.24801 0.97679 1.02267 0.96054 1.69791 1.26605 1.55929 1.04888 0.85978 0.83014 0.77555 0.78841 1.20526 1.21691 1.21753 1.21680 0.92677 0.97622 0.88855 1.21085 0.94977 0.98375 0.97068 1.21093 0.99710 0.97974 0.94163 0.89747 0.91259 0.91222 0.91353 0.91310 0.89895 0.86083 0.85474 0.92642 0.92493 0.91134 0.92039 0.87193 0.96859 0.93737 0.96231 0.94830 0.85507 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 7.09 37.16 0.26 -0.36 16 2 C 0.08 0.51 0.79 -158.45 -0.12 0.39 16 3 C -0.14 -0.72 8.24 37.16 0.31 -0.41 16 4 C 0.22 2.02 13.46 -20.76 -0.28 1.74 16 5 N -0.43 -5.20 18.54 42.15 0.78 -4.42 16 6 C -0.09 -0.71 4.74 -104.62 -0.50 -1.21 16 7 C -0.11 -1.06 8.81 -39.58 -0.35 -1.40 16 8 C -0.09 -1.04 9.70 -39.58 -0.38 -1.42 16 9 C -0.07 -0.86 5.51 -104.62 -0.58 -1.44 16 10 C 0.10 1.25 5.90 36.01 0.21 1.47 16 11 O -0.37 -6.16 10.05 -35.23 -0.35 -6.52 16 12 C 0.07 1.37 3.45 -24.89 -0.09 1.28 16 13 H 0.06 1.06 7.82 -51.93 -0.41 0.65 16 14 C -0.14 -2.72 6.81 -24.58 -0.17 -2.88 16 15 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 16 N -0.60 -15.81 3.39 -170.07 -0.58 -16.38 16 17 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 18 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 20 N -0.92 -27.01 10.09 55.49 0.56 -26.45 16 21 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.12 2.56 7.02 -3.06 -0.02 2.54 16 26 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 27 C -0.11 -0.90 8.98 -39.58 -0.36 -1.26 16 28 H 0.08 0.25 7.51 -51.93 -0.39 -0.14 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.30 7.51 -51.93 -0.39 -0.09 16 31 H 0.07 0.38 7.39 -51.93 -0.38 0.00 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.12 1.02 7.57 -52.49 -0.40 0.62 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 37 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.11 3.02 5.88 -51.93 -0.31 2.71 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 45 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 46 H 0.13 0.72 5.90 -52.49 -0.31 0.41 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -32.82 377.80 -8.82 -41.63 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.19 Total: -3.28 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.71 Total: -7.43 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.76 Total: -47.25 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.35 Total: -6.52 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.82 -8.82 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223156603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.250 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds