Wall clock time and date at job start Tue Mar 31 2020 11:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47119 * 2 1 4 4 C 1.47198 * 109.47354 * 239.99996 * 2 1 3 5 5 N 2.60797 * 109.47243 * 240.00082 * 2 1 3 6 6 C 1.50702 * 109.46962 * 119.99893 * 2 1 3 7 7 C 1.38237 * 119.99667 * 179.97438 * 6 2 1 8 8 C 1.38238 * 119.99946 * 179.97438 * 7 6 2 9 9 C 1.38241 * 119.99590 * 0.02740 * 8 7 6 10 10 C 1.50701 * 119.99576 * 179.97438 * 9 8 7 11 11 O 1.42903 * 109.46878 * 89.99956 * 10 9 8 12 12 C 1.42899 * 113.99629 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.64352 * 333.13961 * 12 11 10 14 14 C 1.55161 * 110.72079 * 209.99944 * 12 11 10 15 15 C 1.54910 * 101.58330 * 206.13473 * 14 12 11 16 16 N 1.47422 * 104.83286 * 37.01059 * 15 14 12 17 17 C 1.36933 * 125.64960 * 155.91423 * 16 15 14 18 18 H 1.08004 * 119.99899 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99927 * 359.97438 * 17 16 15 20 20 N 1.31621 * 120.00019 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47175 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47264 * 120.00109 * 21 19 17 24 24 H 1.48500 * 109.47297 * 240.00031 * 21 19 17 25 25 C 1.47029 * 108.70190 * 335.86875 * 16 15 14 26 26 C 1.38233 * 120.00269 * 0.24973 * 9 8 7 27 27 C 1.38230 * 120.00212 * 359.97438 * 6 2 1 28 28 H 1.08998 * 109.47321 * 299.99849 * 1 2 3 29 29 H 1.08997 * 109.46822 * 59.99994 * 1 2 3 30 30 H 1.08997 * 109.46925 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47319 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47008 * 300.00455 * 3 2 1 33 33 H 1.08998 * 109.46901 * 59.99894 * 3 2 1 34 34 H 1.07998 * 120.00143 * 359.97438 * 7 6 2 35 35 H 1.07991 * 120.00062 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47060 * 210.00086 * 10 9 8 37 37 H 1.09001 * 109.47380 * 330.00174 * 10 9 8 38 38 H 1.08999 * 111.00670 * 324.21514 * 14 12 11 39 39 H 1.09005 * 111.00378 * 88.02100 * 14 12 11 40 40 H 1.08996 * 110.36467 * 155.85093 * 15 14 12 41 41 H 1.09002 * 110.36841 * 278.05897 * 15 14 12 42 42 H 0.96998 * 119.99780 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.88068 * 241.64004 * 25 16 15 44 44 H 1.09002 * 109.87799 * 120.47399 * 25 16 15 45 45 H 1.08003 * 119.99927 * 179.72604 * 26 9 8 46 46 H 1.07999 * 120.00163 * 359.97438 * 27 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0323 -0.7104 1.2305 7 6 3.3914 -0.8371 1.4490 8 6 3.8523 -1.4883 2.5779 9 6 2.9539 -2.0132 3.4881 10 6 3.4562 -2.7236 4.7186 11 8 3.6156 -1.7812 5.7810 12 6 4.0899 -2.3551 7.0006 13 1 3.8063 -3.4055 7.0669 14 6 3.5556 -1.5640 8.2238 15 6 4.6468 -1.8561 9.2839 16 7 5.9126 -1.8708 8.5284 17 6 7.1557 -1.6286 9.0491 18 1 8.0253 -1.6637 8.4095 19 6 7.2981 -1.3381 10.3990 20 7 6.2384 -1.2959 11.1785 21 14 8.9940 -1.0084 11.1095 22 1 10.0112 -1.1162 10.0330 23 1 9.0306 0.3582 11.6895 24 1 9.2883 -2.0045 12.1708 25 6 5.6193 -2.1897 7.1234 26 6 1.5948 -1.8915 3.2667 27 6 1.1341 -1.2353 2.1407 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 4.0932 -0.4274 0.7376 35 1 4.9140 -1.5870 2.7488 36 1 2.7381 -3.4879 5.0155 37 1 4.4163 -3.1919 4.5013 38 1 3.4988 -0.4977 8.0051 39 1 2.5866 -1.9472 8.5439 40 1 4.6639 -1.0688 10.0375 41 1 4.4712 -2.8246 9.7522 42 1 6.3380 -1.0925 12.1217 43 1 6.1164 -3.1181 6.8425 44 1 5.9570 -1.3767 6.4806 45 1 0.8930 -2.3055 3.9757 46 1 0.0723 -1.1359 1.9702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223156603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:44 Heat of formation + Delta-G solvation = 12.020611 kcal Electronic energy + Delta-G solvation = -24948.519781 eV Core-core repulsion = 21417.151454 eV Total energy + Delta-G solvation = -3531.368327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.03685 -39.86552 -38.42143 -37.36858 -35.86048 -34.19818 -32.06539 -31.88368 -30.93632 -28.84916 -28.29387 -27.08022 -26.14251 -24.41688 -23.27296 -22.18608 -21.85951 -21.73032 -18.98965 -18.68098 -17.98877 -17.22839 -16.74798 -16.62300 -16.24431 -15.87915 -15.50125 -15.28872 -15.11816 -14.79339 -14.61085 -14.38778 -14.28404 -14.23900 -13.88288 -13.61496 -13.48263 -13.18521 -13.05168 -12.96987 -12.83426 -12.71643 -12.61707 -12.49435 -12.43035 -12.23918 -12.05344 -11.98420 -11.79506 -11.65783 -11.60766 -11.32251 -10.77130 -10.47696 -9.82046 -9.67471 -8.91618 -7.79168 -5.24286 0.20560 0.50017 1.46689 1.47903 1.58331 1.69380 1.70878 2.42554 2.51332 2.88919 3.15054 3.31652 3.55511 3.72750 3.78046 3.84612 3.95091 4.00382 4.05681 4.12289 4.15771 4.21740 4.41168 4.45477 4.58946 4.66218 4.72332 4.80046 4.82712 4.87764 4.91963 4.92813 5.00514 5.02730 5.05176 5.06877 5.15230 5.27450 5.34562 5.44266 5.48175 5.57695 5.61633 5.69747 5.78179 6.03045 6.27152 6.34848 6.49235 7.09057 7.75163 8.38640 9.23100 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.002208 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.337892 B =12677.263133 C =13071.149166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.083 3.917 3 C -0.141 4.141 4 C 0.240 3.760 5 N -0.485 5.485 6 C -0.083 4.083 7 C -0.119 4.119 8 C -0.113 4.113 9 C -0.096 4.096 10 C 0.093 3.907 11 O -0.380 6.380 12 C 0.093 3.907 13 H 0.087 0.913 14 C -0.124 4.124 15 C 0.153 3.847 16 N -0.626 5.626 17 C -0.241 4.241 18 H 0.078 0.922 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.983 3.017 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.113 3.887 26 C -0.103 4.103 27 C -0.105 4.105 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.077 0.923 41 H -0.003 1.003 42 H 0.249 0.751 43 H 0.026 0.974 44 H 0.024 0.976 45 H 0.142 0.858 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.034 2.344 -20.954 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.079 3.921 3 C -0.199 4.199 4 C -0.078 4.078 5 N -0.160 5.160 6 C -0.084 4.084 7 C -0.138 4.138 8 C -0.131 4.131 9 C -0.096 4.096 10 C 0.017 3.983 11 O -0.299 6.299 12 C 0.035 3.965 13 H 0.104 0.896 14 C -0.163 4.163 15 C 0.029 3.971 16 N -0.353 5.353 17 C -0.370 4.370 18 H 0.096 0.904 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.811 3.189 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.012 4.012 26 C -0.120 4.120 27 C -0.123 4.123 28 H 0.123 0.877 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.015 0.985 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.160 0.840 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.394 1.760 -22.245 27.110 hybrid contribution 1.444 -0.150 0.999 1.762 sum -13.950 1.610 -21.246 25.468 Atomic orbital electron populations 1.22091 0.88661 1.04236 1.05470 1.17324 0.98436 0.94293 0.82019 1.21994 1.01887 0.90988 1.05062 1.29551 0.91974 0.92364 0.93863 1.81240 1.10475 1.10794 1.13525 1.19619 0.93323 0.99719 0.95725 1.21097 0.95763 0.99375 0.97516 1.21168 0.99917 0.97574 0.94415 1.19789 0.94657 1.00192 0.94942 1.21545 1.00377 0.91088 0.85264 1.87988 1.86216 1.35567 1.20175 1.22973 0.91986 0.97380 0.84162 0.89554 1.22970 0.99024 1.00226 0.94074 1.21750 0.82816 0.98960 0.93619 1.44713 1.03666 1.82489 1.04434 1.19480 0.84740 1.39882 0.92890 0.90372 1.25665 1.01435 1.02411 0.96427 1.70034 1.28416 1.56550 1.04799 0.84946 0.78920 0.77028 0.78024 1.19295 1.21597 1.21651 1.21850 0.95725 0.97246 0.86428 1.21342 0.94378 0.98355 0.97970 1.21453 1.01302 0.96441 0.93070 0.87746 0.90150 0.90983 0.92202 0.89951 0.88649 0.85652 0.86172 0.90591 0.92626 0.91934 0.88779 0.90517 0.98493 0.94127 0.95645 0.95828 0.83995 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 7.09 71.98 0.51 -0.20 16 2 C 0.08 0.87 0.79 -54.73 -0.04 0.82 16 3 C -0.14 -1.11 8.24 71.98 0.59 -0.51 16 4 C 0.24 4.14 13.46 89.44 1.20 5.34 16 5 N -0.49 -11.51 18.54 20.00 0.37 -11.14 16 6 C -0.08 -1.19 4.74 -19.87 -0.09 -1.29 16 7 C -0.12 -2.20 8.81 22.27 0.20 -2.00 16 8 C -0.11 -2.46 9.70 22.27 0.22 -2.24 16 9 C -0.10 -2.10 5.51 -19.86 -0.11 -2.21 16 10 C 0.09 2.25 5.90 71.24 0.42 2.67 16 11 O -0.38 -12.09 10.05 -148.98 -1.50 -13.59 16 12 C 0.09 3.27 3.45 31.78 0.11 3.38 16 13 H 0.09 2.66 7.82 -2.39 -0.02 2.64 16 14 C -0.12 -4.76 6.81 31.99 0.22 -4.54 16 15 C 0.15 7.66 5.89 86.86 0.51 8.17 16 16 N -0.63 -33.40 3.39 -691.99 -2.35 -35.75 16 17 C -0.24 -13.89 10.27 84.03 0.86 -13.02 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 20 N -0.95 -56.80 10.09 21.65 0.22 -56.59 16 21 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 C 0.11 4.92 7.02 86.73 0.61 5.53 16 26 C -0.10 -1.75 9.70 22.27 0.22 -1.54 16 27 C -0.11 -1.37 8.98 22.27 0.20 -1.17 16 28 H 0.10 0.14 7.51 -2.39 -0.02 0.12 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.35 7.51 -2.39 -0.02 0.33 16 31 H 0.06 0.58 7.39 -2.39 -0.02 0.56 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.13 2.09 7.57 -2.91 -0.02 2.07 16 35 H 0.12 2.64 8.06 -2.92 -0.02 2.62 16 36 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 37 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 39 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 40 H 0.08 4.35 5.88 -2.39 -0.01 4.34 16 41 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.16 1.03 5.90 -2.91 -0.02 1.01 16 Total: -1.00 -72.79 377.80 5.82 -66.97 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.96 Total: 8.18 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 6.09 Total: -6.20 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -1.76 Total: -103.47 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.50 Total: -13.59 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -72.79 5.82 -66.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223156603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.989 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds