Wall clock time and date at job start Tue Mar 31 2020 11:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47309 * 2 1 4 4 C 1.52993 * 109.47191 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46906 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99723 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47082 * 35.00215 * 6 5 4 8 8 C 1.52997 * 109.47252 * 275.00122 * 6 5 4 9 9 C 1.53002 * 109.46817 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47233 * 60.00194 * 9 8 6 11 11 C 1.52997 * 109.47060 * 299.99657 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 14 14 N 1.46496 * 109.47487 * 179.97438 * 12 11 10 15 15 C 1.34778 * 120.00072 * 275.00191 * 14 12 11 16 16 O 1.21273 * 120.00144 * 359.97438 * 15 14 12 17 17 C 1.50703 * 119.99935 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47206 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99964 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00386 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99794 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00228 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47009 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47449 * 119.99676 * 23 21 19 26 26 H 1.48504 * 109.47160 * 239.99974 * 23 21 19 27 27 H 1.08997 * 109.46757 * 60.00208 * 1 2 3 28 28 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46786 * 299.99712 * 1 2 3 30 30 H 1.09004 * 109.47337 * 240.00167 * 2 1 3 31 31 H 1.09001 * 109.47413 * 120.00104 * 2 1 3 32 32 H 1.09004 * 109.46785 * 59.99829 * 3 2 1 33 33 H 1.09001 * 109.46968 * 300.00376 * 3 2 1 34 34 H 1.08994 * 109.47424 * 60.00384 * 4 3 2 35 35 H 1.09001 * 109.47410 * 300.00030 * 4 3 2 36 36 H 1.00902 * 111.00094 * 303.95401 * 5 4 3 37 37 H 1.08993 * 109.47194 * 59.99761 * 8 6 5 38 38 H 1.09002 * 109.46695 * 299.99775 * 8 6 5 39 39 H 1.08992 * 109.47063 * 299.99823 * 9 8 6 40 40 H 1.09004 * 109.46733 * 179.97438 * 9 8 6 41 41 H 1.09002 * 109.47398 * 59.99826 * 10 9 8 42 42 H 1.09001 * 109.47194 * 180.02562 * 10 9 8 43 43 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 44 44 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 45 45 H 0.97007 * 119.99693 * 95.00333 * 14 12 11 46 46 H 1.08999 * 109.47030 * 300.00189 * 17 15 14 47 47 H 1.09005 * 109.47169 * 59.99938 * 17 15 14 48 48 H 0.97003 * 119.99907 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 5.5282 2.8667 0.0000 7 1 5.9138 2.0351 -0.5899 8 6 6.0414 2.7539 1.4369 9 6 7.5709 2.7953 1.4369 10 6 8.0453 4.1164 0.8281 11 6 7.5321 4.2292 -0.6088 12 6 6.0027 4.1877 -0.6089 13 1 5.6167 5.0191 -0.0190 14 7 5.5112 4.2963 -1.9847 15 6 5.3496 5.5096 -2.5488 16 8 5.6106 6.5116 -1.9173 17 6 4.8446 5.6213 -3.9643 18 16 4.7370 7.3668 -4.4306 19 6 4.1392 7.2065 -6.0803 20 1 3.9562 6.2266 -6.4956 21 6 3.9027 8.3398 -6.8459 22 7 4.1253 9.5343 -6.3397 23 14 3.2683 8.1700 -8.5947 24 1 3.1018 6.7315 -8.9233 25 1 1.9591 8.8605 -8.7157 26 1 4.2401 8.7829 -9.5355 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9289 -0.8908 35 1 3.9338 0.9285 0.8891 36 1 3.6838 3.3443 -0.7809 37 1 5.7030 1.8131 1.8708 38 1 5.6558 3.5855 2.0267 39 1 7.9568 1.9641 0.8470 40 1 7.9365 2.7155 2.4607 41 1 7.6593 4.9477 1.4180 42 1 9.1349 4.1457 0.8276 43 1 7.8704 5.1700 -1.0428 44 1 7.9181 3.3978 -1.1988 45 1 5.3021 3.4949 -2.4897 46 1 5.5317 5.1076 -4.6368 47 1 3.8574 5.1644 -4.0350 48 1 3.9596 10.3264 -6.8746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224923716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:56 Heat of formation + Delta-G solvation = -74.585954 kcal Electronic energy + Delta-G solvation = -24163.992912 eV Core-core repulsion = 20764.312994 eV Total energy + Delta-G solvation = -3399.679918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.10665 -38.23266 -36.48103 -34.24514 -33.79488 -32.43373 -30.45931 -30.15693 -28.38753 -27.03914 -25.48087 -23.47288 -22.55161 -21.61011 -21.29526 -20.34165 -19.89796 -17.87312 -16.73774 -16.32048 -16.02804 -15.46170 -15.20899 -14.81196 -14.79318 -14.60110 -14.25680 -14.05042 -13.98617 -13.49307 -13.31615 -13.10545 -12.84239 -12.73868 -12.51871 -12.33780 -11.92238 -11.89961 -11.43348 -11.35698 -11.32809 -11.21308 -11.07612 -11.02416 -10.88510 -10.82938 -10.76257 -10.72509 -10.30808 -9.80681 -9.37360 -9.08301 -8.89672 -8.64645 -8.23538 -6.50210 -6.22313 -3.92677 3.01097 3.08294 3.21032 3.27557 3.31973 3.68427 3.79542 4.19751 4.41552 4.61911 4.66335 4.77291 4.79897 4.88020 4.97290 5.03887 5.07892 5.12957 5.13244 5.16956 5.26879 5.33553 5.35350 5.37435 5.52703 5.55811 5.59742 5.62817 5.69462 5.72829 5.81934 5.86252 5.88681 5.91060 5.97921 6.00635 6.03629 6.07928 6.12243 6.18717 6.26653 6.64055 6.84294 7.17253 7.59219 7.67116 8.34779 8.60633 9.23202 10.85130 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.003154 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.508091 B = 8875.475197 C =11108.967810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.059 3.941 5 N -0.688 5.688 6 C 0.085 3.915 7 H 0.046 0.954 8 C -0.103 4.103 9 C -0.120 4.120 10 C -0.117 4.117 11 C -0.128 4.128 12 C 0.146 3.854 13 H 0.097 0.903 14 N -0.739 5.739 15 C 0.534 3.466 16 O -0.512 6.512 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.347 0.653 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.393 0.607 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -20.637 14.876 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.070 4.070 5 N -0.321 5.321 6 C -0.026 4.026 7 H 0.064 0.936 8 C -0.142 4.142 9 C -0.158 4.158 10 C -0.155 4.155 11 C -0.168 4.168 12 C 0.041 3.959 13 H 0.115 0.885 14 N -0.393 5.393 15 C 0.320 3.680 16 O -0.385 6.385 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.226 0.774 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.818 -18.673 16.574 25.033 hybrid contribution -0.612 -1.951 -3.113 3.724 sum 1.206 -20.624 13.461 24.657 Atomic orbital electron populations 1.21767 0.95709 1.01503 1.02053 1.21475 0.96056 0.96680 1.01822 1.21610 0.94529 0.96733 1.02952 1.22024 0.95267 0.89405 1.00270 1.60450 1.07128 1.13509 1.50981 1.21765 0.87736 0.96140 0.96924 0.93573 1.21491 0.94687 1.02566 0.95435 1.21576 0.95536 0.97852 1.00882 1.21508 1.00468 0.97760 0.95806 1.21918 0.94866 1.02870 0.97115 1.21079 0.93875 0.98094 0.82885 0.88541 1.46143 1.69720 1.08521 1.14933 1.20287 0.76729 0.82681 0.88276 1.90704 1.48591 1.35721 1.63533 1.23542 1.03552 1.08496 0.94895 1.85407 1.86392 0.95736 1.15662 1.22904 1.51052 0.95544 0.98851 0.90932 1.24992 0.95116 0.94475 0.99015 1.70028 1.45653 0.97560 1.37007 0.86121 0.78527 0.78328 0.82539 1.19643 1.20544 1.20571 0.92621 0.92875 0.92649 0.92210 0.92092 0.91005 0.91935 0.95471 0.91145 0.83285 0.91890 0.90863 0.92186 0.91709 0.91466 0.91743 0.90740 0.92045 0.77360 0.89356 0.89329 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.12 -0.97 5.47 -26.73 -0.15 -1.12 16 4 C 0.06 0.49 5.48 -3.82 -0.02 0.47 16 5 N -0.69 -6.81 6.31 -106.72 -0.67 -7.49 16 6 C 0.08 0.80 2.05 -67.71 -0.14 0.67 16 7 H 0.05 0.42 7.80 -51.93 -0.41 0.01 16 8 C -0.10 -0.89 5.43 -26.73 -0.15 -1.04 16 9 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 10 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 11 C -0.13 -1.45 5.49 -26.73 -0.15 -1.60 16 12 C 0.15 1.74 2.02 -67.93 -0.14 1.60 16 13 H 0.10 1.42 7.58 -51.93 -0.39 1.02 16 14 N -0.74 -9.64 4.14 -53.81 -0.22 -9.87 16 15 C 0.53 9.75 7.81 -10.98 -0.09 9.66 16 16 O -0.51 -11.43 15.52 5.56 0.09 -11.34 16 17 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 23 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.22 8.06 -51.93 -0.42 -0.20 16 35 H 0.07 0.56 7.43 -51.93 -0.39 0.18 16 36 H 0.35 3.78 7.56 -39.29 -0.30 3.49 16 37 H 0.06 0.50 7.45 -51.93 -0.39 0.12 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.39 4.12 8.60 -40.82 -0.35 3.77 16 46 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 47 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -32.55 394.10 -10.83 -43.38 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.95 Total: 3.39 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.51 Total: -11.17 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.16 Total: -42.77 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.55 -10.83 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224923716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.205 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds