Wall clock time and date at job start Tue Mar 31 2020 11:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47309 * 2 1 4 4 C 1.52993 * 109.47191 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46906 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99723 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47082 * 35.00215 * 6 5 4 8 8 C 1.52997 * 109.47252 * 275.00122 * 6 5 4 9 9 C 1.53002 * 109.46817 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47233 * 60.00194 * 9 8 6 11 11 C 1.52997 * 109.47060 * 299.99657 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 14 14 N 1.46496 * 109.47487 * 179.97438 * 12 11 10 15 15 C 1.34778 * 120.00072 * 275.00191 * 14 12 11 16 16 O 1.21273 * 120.00144 * 359.97438 * 15 14 12 17 17 C 1.50703 * 119.99935 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47206 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99964 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00386 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99794 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00228 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47009 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47449 * 119.99676 * 23 21 19 26 26 H 1.48504 * 109.47160 * 239.99974 * 23 21 19 27 27 H 1.08997 * 109.46757 * 60.00208 * 1 2 3 28 28 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46786 * 299.99712 * 1 2 3 30 30 H 1.09004 * 109.47337 * 240.00167 * 2 1 3 31 31 H 1.09001 * 109.47413 * 120.00104 * 2 1 3 32 32 H 1.09004 * 109.46785 * 59.99829 * 3 2 1 33 33 H 1.09001 * 109.46968 * 300.00376 * 3 2 1 34 34 H 1.08994 * 109.47424 * 60.00384 * 4 3 2 35 35 H 1.09001 * 109.47410 * 300.00030 * 4 3 2 36 36 H 1.00902 * 111.00094 * 303.95401 * 5 4 3 37 37 H 1.08993 * 109.47194 * 59.99761 * 8 6 5 38 38 H 1.09002 * 109.46695 * 299.99775 * 8 6 5 39 39 H 1.08992 * 109.47063 * 299.99823 * 9 8 6 40 40 H 1.09004 * 109.46733 * 179.97438 * 9 8 6 41 41 H 1.09002 * 109.47398 * 59.99826 * 10 9 8 42 42 H 1.09001 * 109.47194 * 180.02562 * 10 9 8 43 43 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 44 44 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 45 45 H 0.97007 * 119.99693 * 95.00333 * 14 12 11 46 46 H 1.08999 * 109.47030 * 300.00189 * 17 15 14 47 47 H 1.09005 * 109.47169 * 59.99938 * 17 15 14 48 48 H 0.97003 * 119.99907 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 5.5282 2.8667 0.0000 7 1 5.9138 2.0351 -0.5899 8 6 6.0414 2.7539 1.4369 9 6 7.5709 2.7953 1.4369 10 6 8.0453 4.1164 0.8281 11 6 7.5321 4.2292 -0.6088 12 6 6.0027 4.1877 -0.6089 13 1 5.6167 5.0191 -0.0190 14 7 5.5112 4.2963 -1.9847 15 6 5.3496 5.5096 -2.5488 16 8 5.6106 6.5116 -1.9173 17 6 4.8446 5.6213 -3.9643 18 16 4.7370 7.3668 -4.4306 19 6 4.1392 7.2065 -6.0803 20 1 3.9562 6.2266 -6.4956 21 6 3.9027 8.3398 -6.8459 22 7 4.1253 9.5343 -6.3397 23 14 3.2683 8.1700 -8.5947 24 1 3.1018 6.7315 -8.9233 25 1 1.9591 8.8605 -8.7157 26 1 4.2401 8.7829 -9.5355 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9289 -0.8908 35 1 3.9338 0.9285 0.8891 36 1 3.6838 3.3443 -0.7809 37 1 5.7030 1.8131 1.8708 38 1 5.6558 3.5855 2.0267 39 1 7.9568 1.9641 0.8470 40 1 7.9365 2.7155 2.4607 41 1 7.6593 4.9477 1.4180 42 1 9.1349 4.1457 0.8276 43 1 7.8704 5.1700 -1.0428 44 1 7.9181 3.3978 -1.1988 45 1 5.3021 3.4949 -2.4897 46 1 5.5317 5.1076 -4.6368 47 1 3.8574 5.1644 -4.0350 48 1 3.9596 10.3264 -6.8746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224923716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:55 Heat of formation + Delta-G solvation = -95.703895 kcal Electronic energy + Delta-G solvation = -24164.908655 eV Core-core repulsion = 20764.312994 eV Total energy + Delta-G solvation = -3400.595660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24377 -39.42045 -37.17360 -35.28170 -34.66208 -34.58674 -31.71181 -30.92379 -29.53956 -27.89631 -27.59948 -24.20775 -23.43527 -22.39320 -21.93360 -21.59122 -20.85023 -19.79413 -17.94693 -17.66970 -16.89224 -16.79840 -16.50734 -16.25634 -15.91872 -15.77214 -15.34715 -15.06052 -14.71590 -14.65855 -14.55672 -14.13515 -13.92986 -13.84136 -13.49209 -13.36152 -13.16768 -12.95549 -12.90944 -12.64153 -12.59301 -12.24839 -12.08273 -11.93240 -11.91548 -11.73243 -11.57707 -11.50681 -11.43880 -11.17818 -11.16153 -10.85973 -10.27769 -10.11453 -9.38812 -8.67211 -8.35511 -6.13432 1.25955 1.40772 1.46207 1.57320 1.59935 2.21804 2.27195 2.98756 3.03721 3.30644 3.56203 3.88394 3.94874 4.00194 4.05974 4.11935 4.18517 4.26472 4.27706 4.29670 4.39807 4.47293 4.48460 4.49425 4.52629 4.67288 4.75152 4.84726 4.92688 4.95078 5.00699 5.01807 5.10831 5.18054 5.19376 5.27002 5.28295 5.34378 5.40487 5.41273 5.45959 5.48624 5.55207 6.11926 6.19216 6.34644 6.45041 7.05955 7.22264 8.73930 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.003154 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.508091 B = 8875.475197 C =11108.967810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.117 4.117 4 C 0.063 3.937 5 N -0.700 5.700 6 C 0.094 3.906 7 H 0.064 0.936 8 C -0.101 4.101 9 C -0.113 4.113 10 C -0.115 4.115 11 C -0.125 4.125 12 C 0.148 3.852 13 H 0.065 0.935 14 N -0.712 5.712 15 C 0.538 3.462 16 O -0.560 6.560 17 C -0.130 4.130 18 S -0.150 6.150 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.339 0.661 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.411 0.589 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -24.047 14.471 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.155 4.155 4 C -0.066 4.066 5 N -0.332 5.332 6 C -0.016 4.016 7 H 0.082 0.918 8 C -0.139 4.139 9 C -0.151 4.151 10 C -0.154 4.154 11 C -0.164 4.164 12 C 0.043 3.957 13 H 0.083 0.917 14 N -0.366 5.366 15 C 0.324 3.676 16 O -0.437 6.437 17 C -0.281 4.281 18 S 0.078 5.922 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.158 0.842 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.247 0.753 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.864 -22.152 16.187 27.499 hybrid contribution -0.611 -0.962 -2.881 3.098 sum 1.253 -23.114 13.305 26.699 Atomic orbital electron populations 1.21781 0.95800 1.01948 1.01663 1.21449 0.95968 0.95830 1.02402 1.21571 0.94619 0.97381 1.01951 1.22047 0.95132 0.88410 1.01011 1.60493 1.07299 1.14633 1.50759 1.21727 0.87648 0.94628 0.97600 0.91838 1.21488 0.95345 1.02669 0.94418 1.21541 0.94715 0.96987 1.01852 1.21504 1.01102 0.98540 0.94211 1.21871 0.94107 1.01726 0.98712 1.21154 0.94425 0.98685 0.81436 0.91717 1.45855 1.67890 1.07418 1.15424 1.20025 0.76510 0.83537 0.87559 1.90697 1.50982 1.37684 1.64376 1.23377 1.05401 1.03040 0.96284 1.85597 1.86800 1.03145 1.16695 1.23230 1.50988 0.96196 0.98918 0.89962 1.26130 0.95087 0.93921 1.04048 1.70191 1.46931 0.98593 1.39067 0.84903 0.77837 0.79074 0.76112 1.18017 1.19916 1.19944 0.93234 0.92018 0.92863 0.91761 0.91304 0.92065 0.92912 0.94581 0.90336 0.84161 0.90410 0.92404 0.90772 0.90260 0.92779 0.90614 0.94091 0.90342 0.75286 0.87390 0.87270 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.42 5.93 30.60 0.18 -1.24 16 3 C -0.12 -1.73 5.47 30.59 0.17 -1.56 16 4 C 0.06 0.89 5.48 86.30 0.47 1.36 16 5 N -0.70 -12.77 6.31 -491.56 -3.10 -15.87 16 6 C 0.09 1.59 2.05 44.92 0.09 1.68 16 7 H 0.06 0.90 7.80 -2.39 -0.02 0.89 16 8 C -0.10 -1.51 5.43 30.59 0.17 -1.35 16 9 C -0.11 -1.45 5.92 30.60 0.18 -1.27 16 10 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 11 C -0.12 -2.74 5.49 30.59 0.17 -2.57 16 12 C 0.15 3.45 2.02 44.99 0.09 3.54 16 13 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 14 N -0.71 -17.91 4.14 -442.54 -1.83 -19.74 16 15 C 0.54 19.78 7.81 87.66 0.68 20.46 16 16 O -0.56 -26.10 15.52 -3.01 -0.05 -26.14 16 17 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 18 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 19 C -0.55 -31.20 9.50 67.95 0.65 -30.55 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 23 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.04 0.46 8.06 -2.39 -0.02 0.44 16 35 H 0.08 1.01 7.43 -2.39 -0.02 0.99 16 36 H 0.34 7.02 7.56 -89.69 -0.68 6.34 16 37 H 0.08 0.99 7.45 -2.39 -0.02 0.97 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.41 7.62 8.60 -92.70 -0.80 6.83 16 46 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 47 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 48 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -73.56 394.10 0.27 -73.29 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.55 Total: 26.18 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.65 Total: -18.00 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -4.65 Total: -91.53 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -73.56 0.27 -73.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224923716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.412 kcal (2) G-P(sol) polarization free energy of solvation -73.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds